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Items: 1 to 50 of 468

1.

The SUPERFAMILY 2.0 database: a significant proteome update and a new webserver.

Pandurangan AP, Stahlhacke J, Oates ME, Smithers B, Gough J.

Nucleic Acids Res. 2018 Nov 16. doi: 10.1093/nar/gky1130. [Epub ahead of print]

PMID:
30445555
2.

InterPro in 2019: improving coverage, classification and access to protein sequence annotations.

Mitchell AL, Attwood TK, Babbitt PC, Blum M, Bork P, Bridge A, Brown SD, Chang HY, El-Gebali S, Fraser MI, Gough J, Haft DR, Huang H, Letunic I, Lopez R, Luciani A, Madeira F, Marchler-Bauer A, Mi H, Natale DA, Necci M, Nuka G, Orengo C, Pandurangan AP, Paysan-Lafosse T, Pesseat S, Potter SC, Qureshi MA, Rawlings ND, Redaschi N, Richardson LJ, Rivoire C, Salazar GA, Sangrador-Vegas A, Sigrist CJA, Sillitoe I, Sutton GG, Thanki N, Thomas PD, Tosatto SCE, Yong SY, Finn RD.

Nucleic Acids Res. 2018 Nov 6. doi: 10.1093/nar/gky1100. [Epub ahead of print]

PMID:
30398656
3.

Bioactive Silk-Based Nerve Guidance Conduits for Augmenting Peripheral Nerve Repair.

Magaz A, Faroni A, Gough JE, Reid AJ, Li X, Blaker JJ.

Adv Healthc Mater. 2018 Dec;7(23):e1800308. doi: 10.1002/adhm.201800308. Epub 2018 Sep 10. Review.

PMID:
30260575
4.

Oxide-mediated recovery of field-effect mobility in plasma-treated MoS2.

Jadwiszczak J, O'Callaghan C, Zhou Y, Fox DS, Weitz E, Keane D, Cullen CP, O'Reilly I, Downing C, Shmeliov A, Maguire P, Gough JJ, McGuinness C, Ferreira MS, Bradley AL, Boland JJ, Duesberg GS, Nicolosi V, Zhang H.

Sci Adv. 2018 Mar 2;4(3):eaao5031. doi: 10.1126/sciadv.aao5031. eCollection 2018 Mar.

5.

Attitudes Toward e-Mental Health Services in a Community Sample of Adults: Online Survey.

March S, Day J, Ritchie G, Rowe A, Gough J, Hall T, Yuen CYJ, Donovan CL, Ireland M.

J Med Internet Res. 2018 Feb 19;20(2):e59. doi: 10.2196/jmir.9109.

6.

'One-pot' sequential enzymatic modification of synthetic glycolipids in vesicle membranes.

Craven FL, Silva J, Segarra-Maset MD, Huang K, Both P, Gough JE, Flitsch SL, Webb SJ.

Chem Commun (Camb). 2018 Feb 1;54(11):1347-1350. doi: 10.1039/c7cc09148f.

PMID:
29350727
7.

Axon mimicking hydrophilic hollow polycaprolactone microfibres for diffusion magnetic resonance imaging.

Zhou FL, Li Z, Gough JE, Hubbard Cristinacce PL, Parker GJM.

Mater Des. 2018 Jan 5;137:394-403. doi: 10.1016/j.matdes.2017.10.047.

8.

Hollow Polycaprolactone Microspheres with/without a Single Surface Hole by Co-Electrospraying.

Zhou FL, Chirazi A, Gough JE, Hubbard Cristinacce PL, Parker GJM.

Langmuir. 2017 Nov 21;33(46):13262-13271. doi: 10.1021/acs.langmuir.7b01985. Epub 2017 Nov 8.

9.

Poly(vinylphosphonic acid-co-acrylic acid) hydrogels: The effect of copolymer composition on osteoblast adhesion and proliferation.

Dey RE, Wimpenny I, Gough JE, Watts DC, Budd PM.

J Biomed Mater Res A. 2018 Jan;106(1):255-264. doi: 10.1002/jbm.a.36234. Epub 2017 Oct 24.

10.

The unique calcium chelation property of poly(vinyl phosphonic acid-co-acrylic acid) and effects on osteogenesis in vitro.

Wang QG, Wimpenny I, Dey RE, Zhong X, Youle PJ, Downes S, Watts DC, Budd PM, Hoyland JA, Gough JE.

J Biomed Mater Res A. 2018 Jan;106(1):168-179. doi: 10.1002/jbm.a.36223. Epub 2017 Sep 26.

11.

Use of lecithin to control fiber morphology in electrospun poly (ɛ-caprolactone) scaffolds for improved tissue engineering applications.

Coverdale BDM, Gough JE, Sampson WW, Hoyland JA.

J Biomed Mater Res A. 2017 Oct;105(10):2865-2874. doi: 10.1002/jbm.a.36139. Epub 2017 Jul 18.

12.

(Chitosan-g-glycidyl methacrylate)-xanthan hydrogel implant in Wistar rats for spinal cord regeneration.

Elizalde-Peña EA, Quintero-Ortega IA, Zárate-Triviño DG, Nuño-Licona A, Gough J, Sanchez IC, Medina DI, Luna-Barcenas G.

Mater Sci Eng C Mater Biol Appl. 2017 Sep 1;78:892-900. doi: 10.1016/j.msec.2017.03.005. Epub 2017 Mar 6.

PMID:
28576065
13.

Matching phenotypes to whole genomes: Lessons learned from four iterations of the personal genome project community challenges.

Cai B, Li B, Kiga N, Thusberg J, Bergquist T, Chen YC, Niknafs N, Carter H, Tokheim C, Beleva-Guthrie V, Douville C, Bhattacharya R, Yeo HTG, Fan J, Sengupta S, Kim D, Cline M, Turner T, Diekhans M, Zaucha J, Pal LR, Cao C, Yu CH, Yin Y, Carraro M, Giollo M, Ferrari C, Leonardi E, Tosatto SCE, Bobe J, Ball M, Hoskins RA, Repo S, Church G, Brenner SE, Moult J, Gough J, Stanke M, Karchin R, Mooney SD.

Hum Mutat. 2017 Sep;38(9):1266-1276. doi: 10.1002/humu.23265. Epub 2017 Jun 19.

14.

Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI.

Carraro M, Minervini G, Giollo M, Bromberg Y, Capriotti E, Casadio R, Dunbrack R, Elefanti L, Fariselli P, Ferrari C, Gough J, Katsonis P, Leonardi E, Lichtarge O, Menin C, Martelli PL, Niroula A, Pal LR, Repo S, Scaini MC, Vihinen M, Wei Q, Xu Q, Yang Y, Yin Y, Zaucha J, Zhao H, Zhou Y, Brenner SE, Moult J, Tosatto SCE.

Hum Mutat. 2017 Sep;38(9):1042-1050. doi: 10.1002/humu.23235. Epub 2017 May 16.

15.

The risk of unintentional out-of-network encounters with hospital-based physicians at in-network hospitals.

Brown LH, Weston RA, Gough JE.

Am J Emerg Med. 2017 Sep;35(9):1228-1233. doi: 10.1016/j.ajem.2017.03.033. Epub 2017 Mar 18.

PMID:
28343816
16.

Pillars Article: Molecular Cloning of cDNA Encoding a Murine Haematopoietic Growth Regulator, Granulocyte-Macrophage Colony Stimulating Factor. Nature. 1984. 309: 763-767.

Gough NM, Gough J, Metcalf D, Kelso A, Grail D, Nicola NA, Burgess AW, Dunn AR.

J Immunol. 2017 Apr 1;198(7):2522-2526. No abstract available.

17.

An atlas of human long non-coding RNAs with accurate 5' ends.

Hon CC, Ramilowski JA, Harshbarger J, Bertin N, Rackham OJ, Gough J, Denisenko E, Schmeier S, Poulsen TM, Severin J, Lizio M, Kawaji H, Kasukawa T, Itoh M, Burroughs AM, Noma S, Djebali S, Alam T, Medvedeva YA, Testa AC, Lipovich L, Yip CW, Abugessaisa I, Mendez M, Hasegawa A, Tang D, Lassmann T, Heutink P, Babina M, Wells CA, Kojima S, Nakamura Y, Suzuki H, Daub CO, de Hoon MJ, Arner E, Hayashizaki Y, Carninci P, Forrest AR.

Nature. 2017 Mar 9;543(7644):199-204. doi: 10.1038/nature21374. Epub 2017 Mar 1.

PMID:
28241135
18.

Ag colloids and arrays for plasmonic non-radiative energy transfer from quantum dots to a quantum well.

Murphy GP, Gough JJ, Higgins LJ, Karanikolas VD, Wilson KM, Garcia Coindreau JA, Zubialevich VZ, Parbrook PJ, Bradley AL.

Nanotechnology. 2017 Mar 17;28(11):115401. doi: 10.1088/1361-6528/aa5b67. Epub 2017 Jan 31.

PMID:
28140370
19.

Antimicrobial peptide coatings for hydroxyapatite: electrostatic and covalent attachment of antimicrobial peptides to surfaces.

Townsend L, Williams RL, Anuforom O, Berwick MR, Halstead F, Hughes E, Stamboulis A, Oppenheim B, Gough J, Grover L, Scott RA, Webber M, Peacock AF, Belli A, Logan A, de Cogan F.

J R Soc Interface. 2017 Jan;14(126). pii: 20160657. doi: 10.1098/rsif.2016.0657.

20.

A Subset of Ubiquitin-Conjugating Enzymes Is Essential for Plant Immunity.

Zhou B, Mural RV, Chen X, Oates ME, Connor RA, Martin GB, Gough J, Zeng L.

Plant Physiol. 2017 Feb;173(2):1371-1390. doi: 10.1104/pp.16.01190. Epub 2016 Dec 1.

21.

InterPro in 2017-beyond protein family and domain annotations.

Finn RD, Attwood TK, Babbitt PC, Bateman A, Bork P, Bridge AJ, Chang HY, Dosztányi Z, El-Gebali S, Fraser M, Gough J, Haft D, Holliday GL, Huang H, Huang X, Letunic I, Lopez R, Lu S, Marchler-Bauer A, Mi H, Mistry J, Natale DA, Necci M, Nuka G, Orengo CA, Park Y, Pesseat S, Piovesan D, Potter SC, Rawlings ND, Redaschi N, Richardson L, Rivoire C, Sangrador-Vegas A, Sigrist C, Sillitoe I, Smithers B, Squizzato S, Sutton G, Thanki N, Thomas PD, Tosatto SC, Wu CH, Xenarios I, Yeh LS, Young SY, Mitchell AL.

Nucleic Acids Res. 2017 Jan 4;45(D1):D190-D199. doi: 10.1093/nar/gkw1107. Epub 2016 Nov 29.

22.

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.

Lizio M, Harshbarger J, Abugessaisa I, Noguchi S, Kondo A, Severin J, Mungall C, Arenillas D, Mathelier A, Medvedeva YA, Lennartsson A, Drabløs F, Ramilowski JA, Rackham O, Gough J, Andersson R, Sandelin A, Ienasescu H, Ono H, Bono H, Hayashizaki Y, Carninci P, Forrest AR, Kasukawa T, Kawaji H.

Nucleic Acids Res. 2017 Jan 4;45(D1):D737-D743. doi: 10.1093/nar/gkw995. Epub 2016 Oct 27.

23.

Computational methods for direct cell conversion.

Kamaraj US, Gough J, Polo JM, Petretto E, Rackham OJ.

Cell Cycle. 2016 Dec 16;15(24):3343-3354. doi: 10.1080/15384101.2016.1238119. Epub 2016 Oct 13. Review.

24.

Influence of plasmonic array geometry on energy transfer from a quantum well to a quantum dot layer.

Higgins LJ, Marocico CA, Karanikolas VD, Bell AP, Gough JJ, Murphy GP, Parbrook PJ, Bradley AL.

Nanoscale. 2016 Oct 27;8(42):18170-18179.

PMID:
27740658
25.

Self-assembling peptide hydrogel for intervertebral disc tissue engineering.

Wan S, Borland S, Richardson SM, Merry CLR, Saiani A, Gough JE.

Acta Biomater. 2016 Dec;46:29-40. doi: 10.1016/j.actbio.2016.09.033. Epub 2016 Sep 24.

26.

In vitro evaluation of poly (lactic-co-glycolic acid)/polyisoprene fibers for soft tissue engineering.

Marques DR, Dos Santos LAL, O'Brien MA, Cartmell SH, Gough JE.

J Biomed Mater Res B Appl Biomater. 2017 Nov;105(8):2581-2591. doi: 10.1002/jbm.b.33796. Epub 2016 Oct 6.

PMID:
27712036
27.

Differential Cell Composition and Cytokine Expression Within Lymph Node Granulomas from BCG-Vaccinated and Non-vaccinated Cattle Experimentally Infected with Mycobacterium bovis.

Salguero FJ, Gibson S, Garcia-Jimenez W, Gough J, Strickland TS, Vordermeier HM, Villarreal-Ramos B.

Transbound Emerg Dis. 2017 Dec;64(6):1734-1749. doi: 10.1111/tbed.12561. Epub 2016 Sep 11.

PMID:
27615603
28.

An expanded evaluation of protein function prediction methods shows an improvement in accuracy.

Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SM, Martelli PL, Profiti G, Casadio R, Cao R, Zhong Z, Cheng J, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Törönen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Bkc D, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang H, Paccanaro A, Gillis J, Sedeño-Cortés AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong Q, Ning W, Zhou Y, Tian W, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SC, Del Pozo A, Fernández JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehman HU, Re M, Mesiti M, Valentini G, Bargsten JW, van Dijk AD, Gemovic B, Glisic S, Perovic V, Veljkovic V, Veljkovic N, Almeida-E-Silva DC, Vencio RZ, Sharan M, Vogel J, Kansakar L, Zhang S, Vucetic S, Wang Z, Sternberg MJ, Wass MN, Huntley RP, Martin MJ, O'Donovan C, Robinson PN, Moreau Y, Tramontano A, Babbitt PC, Brenner SE, Linial M, Orengo CA, Rost B, Greene CS, Mooney SD, Friedberg I, Radivojac P.

Genome Biol. 2016 Sep 7;17(1):184. doi: 10.1186/s13059-016-1037-6.

29.

Electroconvulsive therapy and/or plasmapheresis in autoimmune encephalitis?

Gough JL, Coebergh J, Chandra B, Nilforooshan R.

World J Clin Cases. 2016 Aug 16;4(8):223-8. doi: 10.12998/wjcc.v4.i8.223.

30.

Molecular Principles of Gene Fusion Mediated Rewiring of Protein Interaction Networks in Cancer.

Latysheva NS, Oates ME, Maddox L, Flock T, Gough J, Buljan M, Weatheritt RJ, Babu MM.

Mol Cell. 2016 Aug 18;63(4):579-592. doi: 10.1016/j.molcel.2016.07.008.

31.

Did Viruses Evolve As a Distinct Supergroup from Common Ancestors of Cells?

Harish A, Abroi A, Gough J, Kurland C.

Genome Biol Evol. 2016 Aug 27;8(8):2474-81. doi: 10.1093/gbe/evw175.

32.

Osteogenic differentiation of human mesenchymal stem cells promotes mineralization within a biodegradable peptide hydrogel.

Castillo Diaz LA, Elsawy M, Saiani A, Gough JE, Miller AF.

J Tissue Eng. 2016 Jul 12;7:2041731416649789. doi: 10.1177/2041731416649789. eCollection 2016 Jan-Dec.

33.

Uncooled CMOS terahertz imager using a metamaterial absorber and pn diode.

Escorcia I, Grant J, Gough J, Cumming DR.

Opt Lett. 2016 Jul 15;41(14):3261-4. doi: 10.1364/OL.41.003261.

PMID:
27420510
34.

Evolution of the Calcium-Based Intracellular Signaling System.

Marchadier E, Oates ME, Fang H, Donoghue PC, Hetherington AM, Gough J.

Genome Biol Evol. 2016 Jul 14;8(7):2118-32. doi: 10.1093/gbe/evw139.

35.

Three reasons protein disorder analysis makes more sense in the light of collagen.

Smithers B, Oates ME, Tompa P, Gough J.

Protein Sci. 2016 May;25(5):1030-6. doi: 10.1002/pro.2913. Epub 2016 Apr 19.

36.

Hologenome analysis of two marine sponges with different microbiomes.

Ryu T, Seridi L, Moitinho-Silva L, Oates M, Liew YJ, Mavromatis C, Wang X, Haywood A, Lafi FF, Kupresanin M, Sougrat R, Alzahrani MA, Giles E, Ghosheh Y, Schunter C, Baumgarten S, Berumen ML, Gao X, Aranda M, Foret S, Gough J, Voolstra CR, Hentschel U, Ravasi T.

BMC Genomics. 2016 Feb 29;17:158. doi: 10.1186/s12864-016-2501-0.

37.

A predictive computational framework for direct reprogramming between human cell types.

Rackham OJ, Firas J, Fang H, Oates ME, Holmes ML, Knaupp AS; FANTOM Consortium, Suzuki H, Nefzger CM, Daub CO, Shin JW, Petretto E, Forrest AR, Hayashizaki Y, Polo JM, Gough J.

Nat Genet. 2016 Mar;48(3):331-5. doi: 10.1038/ng.3487. Epub 2016 Jan 18.

PMID:
26780608
38.

Defining a Central Monitoring Capability: Sharing the Experience of TransCelerate BioPharma's Approach, Part 2.

Gough J, Wilson B, Zerola M, Wallis P, Mork L, Knepper D, Achenbach H.

Ther Innov Regul Sci. 2016 Jan;50(1):8-14. doi: 10.1177/2168479015618696.

PMID:
30236019
39.

A modular self-assembly approach to functionalised β-sheet peptide hydrogel biomaterials.

King PJ, Giovanna Lizio M, Booth A, Collins RF, Gough JE, Miller AF, Webb SJ.

Soft Matter. 2016 Feb 14;12(6):1915-23. doi: 10.1039/c5sm02039e. Epub 2016 Jan 6.

PMID:
26702608
40.

Primary hyperparathyroidism during pregnancy: management by minimally invasive surgery based on ultrasound localization.

Stringer KM, Gough J, Gough IR.

ANZ J Surg. 2017 Oct;87(10):E134-E137. doi: 10.1111/ans.13378. Epub 2015 Dec 3.

PMID:
26631158
41.

A versatile approach towards multivalent saccharide displays on magnetic nanoparticles and phospholipid vesicles.

Coxon TP, Fallows TW, Gough JE, Webb SJ.

Org Biomol Chem. 2015 Nov 21;13(43):10751-61. doi: 10.1039/c5ob01591j.

PMID:
26360423
42.

The genome of Aiptasia, a sea anemone model for coral symbiosis.

Baumgarten S, Simakov O, Esherick LY, Liew YJ, Lehnert EM, Michell CT, Li Y, Hambleton EA, Guse A, Oates ME, Gough J, Weis VM, Aranda M, Pringle JR, Voolstra CR.

Proc Natl Acad Sci U S A. 2015 Sep 22;112(38):11893-8. doi: 10.1073/pnas.1513318112. Epub 2015 Aug 31.

43.

A novel culture system for modulating single cell geometry in 3D.

Yuan X, Zhou M, Gough J, Glidle A, Yin H.

Acta Biomater. 2015 Sep;24:228-40. doi: 10.1016/j.actbio.2015.06.008. Epub 2015 Jun 15.

44.

Function-selective domain architecture plasticity potentials in eukaryotic genome evolution.

Linkeviciute V, Rackham OJ, Gough J, Oates ME, Fang H.

Biochimie. 2015 Dec;119:269-77. doi: 10.1016/j.biochi.2015.05.003. Epub 2015 May 15.

45.

Splice junctions are constrained by protein disorder.

Smithers B, Oates ME, Gough J.

Nucleic Acids Res. 2015 May 26;43(10):4814-22. doi: 10.1093/nar/gkv407. Epub 2015 Apr 30.

46.

DGEclust: differential expression analysis of clustered count data.

Vavoulis DV, Francescatto M, Heutink P, Gough J.

Genome Biol. 2015 Feb 20;16:39. doi: 10.1186/s13059-015-0604-6.

47.

Release of proteins and enzymes from vesicular compartments by alternating magnetic fields.

Booth A, Pintre IC, Lin Y, Gough JE, Webb SJ.

Phys Chem Chem Phys. 2015 Jun 28;17(24):15579-88. doi: 10.1039/c4cp05872k. Epub 2015 Mar 18.

PMID:
25785572
48.

Restoration of chondrocytic phenotype on a two-dimensional micropatterned surface.

Zhou M, Yuan X, Yin H, Gough JE.

Biointerphases. 2015 Mar 26;10(1):011003. doi: 10.1116/1.4913565.

PMID:
25720765
49.

Feedback network models for quantum transport.

Gough J.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Dec;90(6):062109. Epub 2014 Dec 3.

PMID:
25615046
50.

An integrative approach to predicting the functional effects of non-coding and coding sequence variation.

Shihab HA, Rogers MF, Gough J, Mort M, Cooper DN, Day IN, Gaunt TR, Campbell C.

Bioinformatics. 2015 May 15;31(10):1536-43. doi: 10.1093/bioinformatics/btv009. Epub 2015 Jan 11.

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