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Items: 12

1.

Probing the active fraction of soil microbiomes using BONCAT-FACS.

Couradeau E, Sasse J, Goudeau D, Nath N, Hazen TC, Bowen BP, Chakraborty R, Malmstrom RR, Northen TR.

Nat Commun. 2019 Jun 24;10(1):2770. doi: 10.1038/s41467-019-10542-0.

2.

Optimizing de novo genome assembly from PCR-amplified metagenomes.

Roux S, Trubl G, Goudeau D, Nath N, Couradeau E, Ahlgren NA, Zhan Y, Marsan D, Chen F, Fuhrman JA, Northen TR, Sullivan MB, Rich VI, Malmstrom RR, Eloe-Fadrosh EA.

PeerJ. 2019 May 9;7:e6902. doi: 10.7717/peerj.6902. eCollection 2019.

3.

Hidden diversity of soil giant viruses.

Schulz F, Alteio L, Goudeau D, Ryan EM, Yu FB, Malmstrom RR, Blanchard J, Woyke T.

Nat Commun. 2018 Nov 19;9(1):4881. doi: 10.1038/s41467-018-07335-2.

4.

Autoantibody levels in myositis patients correlate with clinical response during B cell depletion with rituximab.

Aggarwal R, Oddis CV, Goudeau D, Koontz D, Qi Z, Reed AM, Ascherman DP, Levesque MC.

Rheumatology (Oxford). 2016 Sep;55(9):1710. doi: 10.1093/rheumatology/kew275. Epub 2016 Jul 6. No abstract available.

5.

Visualizing in situ translational activity for identifying and sorting slow-growing archaeal-bacterial consortia.

Hatzenpichler R, Connon SA, Goudeau D, Malmstrom RR, Woyke T, Orphan VJ.

Proc Natl Acad Sci U S A. 2016 Jul 12;113(28):E4069-78. doi: 10.1073/pnas.1603757113. Epub 2016 Jun 28.

6.

Autoantibody levels in myositis patients correlate with clinical response during B cell depletion with rituximab.

Aggarwal R, Oddis CV, Goudeau D, Koontz D, Qi Z, Reed AM, Ascherman DP, Levesque MC.

Rheumatology (Oxford). 2016 Jun;55(6):991-9. doi: 10.1093/rheumatology/kev444. Epub 2016 Feb 16. Erratum in: Rheumatology (Oxford). 2016 Sep;55(9):1710.

7.

Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs.

Eloe-Fadrosh EA, Paez-Espino D, Jarett J, Dunfield PF, Hedlund BP, Dekas AE, Grasby SE, Brady AL, Dong H, Briggs BR, Li WJ, Goudeau D, Malmstrom R, Pati A, Pett-Ridge J, Rubin EM, Woyke T, Kyrpides NC, Ivanova NN.

Nat Commun. 2016 Jan 27;7:10476. doi: 10.1038/ncomms10476.

8.

Anti-signal recognition particle autoantibody ELISA validation and clinical associations.

Aggarwal R, Oddis CV, Goudeau D, Fertig N, Metes I, Stephens C, Qi Z, Koontz D, Levesque MC.

Rheumatology (Oxford). 2015 Jul;54(7):1194-9. doi: 10.1093/rheumatology/keu436. Epub 2014 Dec 17.

9.

Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics.

Rinke C, Lee J, Nath N, Goudeau D, Thompson B, Poulton N, Dmitrieff E, Malmstrom R, Stepanauskas R, Woyke T.

Nat Protoc. 2014 May;9(5):1038-48. doi: 10.1038/nprot.2014.067. Epub 2014 Apr 10.

PMID:
24722403
10.

Anti-transcription intermediary factor 1-gamma autoantibody ELISA development and validation.

Aggarwal R, Oddis CV, Goudeau D, Fertig N, Metes I, Stephens C, Qi Z, Koontz D, Levesque MC.

Rheumatology (Oxford). 2014 Mar;53(3):433-7. doi: 10.1093/rheumatology/ket383. Epub 2013 Nov 19.

11.

The salmonella transcriptome in lettuce and cilantro soft rot reveals a niche overlap with the animal host intestine.

Goudeau DM, Parker CT, Zhou Y, Sela S, Kroupitski Y, Brandl MT.

Appl Environ Microbiol. 2013 Jan;79(1):250-62. doi: 10.1128/AEM.02290-12. Epub 2012 Oct 26.

12.

Transcriptome analysis of Escherichia coli O157:H7 exposed to lysates of lettuce leaves.

Kyle JL, Parker CT, Goudeau D, Brandl MT.

Appl Environ Microbiol. 2010 Mar;76(5):1375-87. doi: 10.1128/AEM.02461-09. Epub 2010 Jan 8.

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