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Items: 37

1.
2.

The Physarum polycephalum Genome Reveals Extensive Use of Prokaryotic Two-Component and Metazoan-Type Tyrosine Kinase Signaling.

Schaap P, Barrantes I, Minx P, Sasaki N, Anderson RW, Bénard M, Biggar KK, Buchler NE, Bundschuh R, Chen X, Fronick C, Fulton L, Golderer G, Jahn N, Knoop V, Landweber LF, Maric C, Miller D, Noegel AA, Peace R, Pierron G, Sasaki T, Schallenberg-Rüdinger M, Schleicher M, Singh R, Spaller T, Storey KB, Suzuki T, Tomlinson C, Tyson JJ, Warren WC, Werner ER, Werner-Felmayer G, Wilson RK, Winckler T, Gott JM, Glöckner G, Marwan W.

Genome Biol Evol. 2015 Nov 27;8(1):109-25. doi: 10.1093/gbe/evv237.

3.

The continuing allure of RNA.

Gott JM.

RNA. 2015 Apr;21(4):622-4. doi: 10.1261/rna.050252.115. No abstract available.

4.

A survey of PPR proteins identifies DYW domains like those of land plant RNA editing factors in diverse eukaryotes.

Schallenberg-Rüdinger M, Lenz H, Polsakiewicz M, Gott JM, Knoop V.

RNA Biol. 2013;10(9):1549-56. doi: 10.4161/rna.25755. Epub 2013 Jul 16.

5.

Doing it in reverse: 3'-to-5' polymerization by the Thg1 superfamily.

Jackman JE, Gott JM, Gray MW.

RNA. 2012 May;18(5):886-99. doi: 10.1261/rna.032300.112. Epub 2012 Mar 28. Review.

6.

Complete characterization of the edited transcriptome of the mitochondrion of Physarum polycephalum using deep sequencing of RNA.

Bundschuh R, Altmüller J, Becker C, Nürnberg P, Gott JM.

Nucleic Acids Res. 2011 Aug;39(14):6044-55. doi: 10.1093/nar/gkr180. Epub 2011 Apr 8.

7.

A role for tRNA(His) guanylyltransferase (Thg1)-like proteins from Dictyostelium discoideum in mitochondrial 5'-tRNA editing.

Abad MG, Long Y, Willcox A, Gott JM, Gray MW, Jackman JE.

RNA. 2011 Apr;17(4):613-23. doi: 10.1261/rna.2517111. Epub 2011 Feb 9.

8.

Abundant 5S rRNA-like transcripts encoded by the mitochondrial genome in amoebozoa.

Bullerwell CE, Burger G, Gott JM, Kourennaia O, Schnare MN, Gray MW.

Eukaryot Cell. 2010 May;9(5):762-73. doi: 10.1128/EC.00013-10. Epub 2010 Mar 19.

9.

Two forms of RNA editing are required for tRNA maturation in Physarum mitochondria.

Gott JM, Somerlot BH, Gray MW.

RNA. 2010 Mar;16(3):482-8. doi: 10.1261/rna.1958810. Epub 2010 Jan 27.

10.

Conformational flexibility of sigma(70) in anti-terminator loading.

DeHaseth PL, Gott JM.

Mol Microbiol. 2010 Feb;75(3):543-6. doi: 10.1111/j.1365-2958.2009.07022.x. Epub 2009 Dec 16.

11.

Distinct roles for sequences upstream of and downstream from Physarum editing sites.

Rhee AC, Somerlot BH, Parimi N, Gott JM.

RNA. 2009 Sep;15(9):1753-65. doi: 10.1261/rna.1668309. Epub 2009 Jul 15.

12.

RNA editing in Physarum mitochondria: assays and biochemical approaches.

Byrne EM, Visomirski-Robic L, Cheng YW, Rhee AC, Gott JM.

Methods Enzymol. 2007;424:143-72.

PMID:
17662840
13.

Discovery of new genes and deletion editing in Physarum mitochondria enabled by a novel algorithm for finding edited mRNAs.

Gott JM, Parimi N, Bundschuh R.

Nucleic Acids Res. 2005 Sep 7;33(16):5063-72. Print 2005.

14.
15.

Expanding genome capacity via RNA editing.

Gott JM.

C R Biol. 2003 Oct-Nov;326(10-11):901-8. Review.

PMID:
14744096
16.

Two distinct roles for terminal uridylyl transferases in RNA editing.

Gott JM.

Proc Natl Acad Sci U S A. 2003 Sep 16;100(19):10583-4. Epub 2003 Sep 8. No abstract available.

17.
19.

Non-templated addition of nucleotides to the 3' end of nascent RNA during RNA editing in Physarum.

Cheng YW, Visomirski-Robic LM, Gott JM.

EMBO J. 2001 Mar 15;20(6):1405-14.

20.

Functions and mechanisms of RNA editing.

Gott JM, Emeson RB.

Annu Rev Genet. 2000;34:499-531. Review.

PMID:
11092837
21.

Transcription and RNA editing in a soluble in vitro system from Physarum mitochondria.

Cheng YW, Gott JM.

Nucleic Acids Res. 2000 Oct 1;28(19):3695-701.

22.

A guide to RNA editing.

Smith HC, Gott JM, Hanson MR.

RNA. 1997 Oct;3(10):1105-23. Review. No abstract available.

23.
24.

Insertional editing of nascent mitochondrial RNAs in Physarum.

Visomirski-Robic LM, Gott JM.

Proc Natl Acad Sci U S A. 1997 Apr 29;94(9):4324-9.

25.
26.

Proton NMR and structural features of a 24-nucleotide RNA hairpin.

Borer PN, Lin Y, Wang S, Roggenbuck MW, Gott JM, Uhlenbeck OC, Pelczer I.

Biochemistry. 1995 May 16;34(19):6488-503.

PMID:
7756280
27.

RNA editing of the coI mRNA throughout the life cycle of Physarum polycephalum.

Rundquist BA, Gott JM.

Mol Gen Genet. 1995 May 10;247(3):306-11.

PMID:
7770035
28.

Using circular permutation analysis to redefine the R17 coat protein binding site.

Gott JM, Pan T, LeCuyer KA, Uhlenbeck OC.

Biochemistry. 1993 Dec 14;32(49):13399-404.

PMID:
7504949
29.
30.

RNA binding properties of the coat protein from bacteriophage GA.

Gott JM, Wilhelm LJ, Uhlenbeck OC.

Nucleic Acids Res. 1991 Dec 11;19(23):6499-503.

31.

A specific, UV-induced RNA-protein cross-link using 5-bromouridine-substituted RNA.

Gott JM, Willis MC, Koch TH, Uhlenbeck OC.

Biochemistry. 1991 Jun 25;30(25):6290-5.

PMID:
1711897
32.

Specific interaction between RNA phage coat proteins and RNA.

Witherell GW, Gott JM, Uhlenbeck OC.

Prog Nucleic Acid Res Mol Biol. 1991;40:185-220. Review. No abstract available.

PMID:
2031083
33.

A self-splicing group I intron in the DNA polymerase gene of Bacillus subtilis bacteriophage SPO1.

Goodrich-Blair H, Scarlato V, Gott JM, Xu MQ, Shub DA.

Cell. 1990 Oct 19;63(2):417-24.

PMID:
2119891
34.

Genes within genes: independent expression of phage T4 intron open reading frames and the genes in which they reside.

Gott JM, Zeeh A, Bell-Pedersen D, Ehrenman K, Belfort M, Shub DA.

Genes Dev. 1988 Dec;2(12B):1791-9.

35.

Structural conservation among three homologous introns of bacteriophage T4 and the group I introns of eukaryotes.

Shub DA, Gott JM, Xu MQ, Lang BF, Michel F, Tomaschewski J, Pedersen-Lane J, Belfort M.

Proc Natl Acad Sci U S A. 1988 Feb;85(4):1151-5.

36.

A family of autocatalytic group I introns in bacteriophage T4.

Shub DA, Xu MQ, Gott JM, Zeeh A, Wilson LD.

Cold Spring Harb Symp Quant Biol. 1987;52:193-200. No abstract available.

PMID:
2841063
37.

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