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Items: 34

1.

Phenotypes Associated with Pathogenicity: Their Expression in Arctic Fungal Isolates.

Perini L, Mogrovejo DC, Tomazin R, Gostinčar C, Brill FHH, Gunde-Cimerman N.

Microorganisms. 2019 Nov 22;7(12). pii: E600. doi: 10.3390/microorganisms7120600.

2.

Population Genomics of an Obligately Halophilic Basidiomycete Wallemia ichthyophaga.

Gostinčar C, Sun X, Zajc J, Fang C, Hou Y, Luo Y, Gunde-Cimerman N, Song Z.

Front Microbiol. 2019 Sep 4;10:2019. doi: 10.3389/fmicb.2019.02019. eCollection 2019.

3.

Genomic Evidence of Recombination in the Basidiomycete Wallemia mellicola.

Sun X, Gostinčar C, Fang C, Zajc J, Hou Y, Song Z, Gunde-Cimerman N.

Genes (Basel). 2019 Jun 4;10(6). pii: E427. doi: 10.3390/genes10060427.

4.

Fifty Aureobasidium pullulans genomes reveal a recombining polyextremotolerant generalist.

Gostinčar C, Turk M, Zajc J, Gunde-Cimerman N.

Environ Microbiol. 2019 Oct;21(10):3638-3652. doi: 10.1111/1462-2920.14693. Epub 2019 Jun 18.

5.

Darkening of the Greenland Ice Sheet: Fungal Abundance and Diversity Are Associated With Algal Bloom.

Perini L, Gostinčar C, Anesio AM, Williamson C, Tranter M, Gunde-Cimerman N.

Front Microbiol. 2019 Mar 21;10:557. doi: 10.3389/fmicb.2019.00557. eCollection 2019.

6.

Stress-Tolerant Yeasts: Opportunistic Pathogenicity Versus Biocontrol Potential.

Zajc J, Gostinčar C, Černoša A, Gunde-Cimerman N.

Genes (Basel). 2019 Jan 14;10(1). pii: E42. doi: 10.3390/genes10010042.

7.

Genomic evidence for intraspecific hybridization in a clonal and extremely halotolerant yeast.

Gostinčar C, Stajich JE, Zupančič J, Zalar P, Gunde-Cimerman N.

BMC Genomics. 2018 May 15;19(1):364. doi: 10.1186/s12864-018-4751-5.

8.

Overview of Oxidative Stress Response Genes in Selected Halophilic Fungi.

Gostinčar C, Gunde-Cimerman N.

Genes (Basel). 2018 Mar 6;9(3). pii: E143. doi: 10.3390/genes9030143.

9.

Genome mining for peptidases in heat-tolerant and mesophilic fungi and putative adaptations for thermostability.

de Oliveira TB, Gostinčar C, Gunde-Cimerman N, Rodrigues A.

BMC Genomics. 2018 Feb 20;19(1):152. doi: 10.1186/s12864-018-4549-5.

10.

Prospects for Fungal Bioremediation of Acidic Radioactive Waste Sites: Characterization and Genome Sequence of Rhodotorula taiwanensis MD1149.

Tkavc R, Matrosova VY, Grichenko OE, Gostinčar C, Volpe RP, Klimenkova P, Gaidamakova EK, Zhou CE, Stewart BJ, Lyman MG, Malfatti SA, Rubinfeld B, Courtot M, Singh J, Dalgard CL, Hamilton T, Frey KG, Gunde-Cimerman N, Dugan L, Daly MJ.

Front Microbiol. 2018 Jan 8;8:2528. doi: 10.3389/fmicb.2017.02528. eCollection 2017.

11.

Glycerol metabolism genes in Aureobasidium pullulans and Aureobasidium subglaciale.

Turk M, Gostinčar C.

Fungal Biol. 2018 Jan;122(1):63-73. doi: 10.1016/j.funbio.2017.10.005. Epub 2017 Nov 6.

PMID:
29248115
12.

Across the tree of life, radiation resistance is governed by antioxidant Mn2+, gauged by paramagnetic resonance.

Sharma A, Gaidamakova EK, Grichenko O, Matrosova VY, Hoeke V, Klimenkova P, Conze IH, Volpe RP, Tkavc R, Gostinčar C, Gunde-Cimerman N, DiRuggiero J, Shuryak I, Ozarowski A, Hoffman BM, Daly MJ.

Proc Natl Acad Sci U S A. 2017 Oct 31;114(44):E9253-E9260. doi: 10.1073/pnas.1713608114. Epub 2017 Oct 17.

13.

High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460.

Matrosova VY, Gaidamakova EK, Makarova KS, Grichenko O, Klimenkova P, Volpe RP, Tkavc R, Ertem G, Conze IH, Brambilla E, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy T, Daum C, Shapiro N, Ivanova N, Kyrpides N, Woyke T, Daligault H, Davenport K, Erkkila T, Goodwin LA, Gu W, Munk C, Teshima H, Xu Y, Chain P, Woolbert M, Gunde-Cimerman N, Wolf YI, Grebenc T, Gostinčar C, Daly MJ.

Stand Genomic Sci. 2017 Jul 28;12:46. doi: 10.1186/s40793-017-0258-y. eCollection 2017.

14.

Insight into the Recent Genome Duplication of the Halophilic Yeast Hortaea werneckii: Combining an Improved Genome with Gene Expression and Chromatin Structure.

Sinha S, Flibotte S, Neira M, Formby S, Plemenitaš A, Cimerman NG, Lenassi M, Gostinčar C, Stajich JE, Nislow C.

G3 (Bethesda). 2017 Jul 5;7(7):2015-2022. doi: 10.1534/g3.117.040691.

15.

Production of Secondary Metabolites in Extreme Environments: Food- and Airborne Wallemia spp. Produce Toxic Metabolites at Hypersaline Conditions.

Jančič S, Frisvad JC, Kocev D, Gostinčar C, Džeroski S, Gunde-Cimerman N.

PLoS One. 2016 Dec 30;11(12):e0169116. doi: 10.1371/journal.pone.0169116. eCollection 2016.

16.

Transport Systems in Halophilic Fungi.

Plemenitaš A, Konte T, Gostinčar C, Cimerman NG.

Adv Exp Med Biol. 2016;892:307-325. doi: 10.1007/978-3-319-25304-6_13. Review.

PMID:
26721280
17.

Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species.

Gostinčar C, Ohm RA, Kogej T, Sonjak S, Turk M, Zajc J, Zalar P, Grube M, Sun H, Han J, Sharma A, Chiniquy J, Ngan CY, Lipzen A, Barry K, Grigoriev IV, Gunde-Cimerman N.

BMC Genomics. 2014 Jul 1;15:549. doi: 10.1186/1471-2164-15-549.

18.

Adaptation to high salt concentrations in halotolerant/halophilic fungi: a molecular perspective.

Plemenitaš A, Lenassi M, Konte T, Kejžar A, Zajc J, Gostinčar C, Gunde-Cimerman N.

Front Microbiol. 2014 May 5;5:199. doi: 10.3389/fmicb.2014.00199. eCollection 2014. Review.

19.

A defense of eastern European science.

Rotter A, Gostinčar C.

Science. 2014 Feb 21;343(6173):839. doi: 10.1126/science.343.6173.839-a. No abstract available.

PMID:
24558145
20.

Insertion of a specific fungal 3'-phosphoadenosine-5'-phosphatase motif into a plant homologue improves halotolerance and drought tolerance of plants.

Gašparič MB, Lenassi M, Gostinčar C, Rotter A, Plemenitaš A, Gunde-Cimerman N, Gruden K, Zel J.

PLoS One. 2013 Dec 9;8(12):e81872. doi: 10.1371/journal.pone.0081872. eCollection 2013.

21.

Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent.

Zajc J, Liu Y, Dai W, Yang Z, Hu J, Gostinčar C, Gunde-Cimerman N.

BMC Genomics. 2013 Sep 13;14:617. doi: 10.1186/1471-2164-14-617.

22.

Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii.

Lenassi M, Gostinčar C, Jackman S, Turk M, Sadowski I, Nislow C, Jones S, Birol I, Cimerman NG, Plemenitaš A.

PLoS One. 2013 Aug 15;8(8):e71328. doi: 10.1371/journal.pone.0071328. eCollection 2013.

23.

Polyextremotolerant black fungi: oligotrophism, adaptive potential, and a link to lichen symbioses.

Gostinčar C, Muggia L, Grube M.

Front Microbiol. 2012 Nov 8;3:390. doi: 10.3389/fmicb.2012.00390. eCollection 2012.

24.

Extremotolerant fungi as genetic resources for biotechnology.

Gostinčar C, Turk M.

Bioengineered. 2012 Sep-Oct;3(5):293-7. doi: 10.4161/bioe.20713. Epub 2012 Jun 18.

25.

Genetic resources of extremotolerant fungi: a method for identification of genes conferring stress tolerance.

Gostinčar C, Gunde-Cimerman N, Turk M.

Bioresour Technol. 2012 May;111:360-7. doi: 10.1016/j.biortech.2012.02.039. Epub 2012 Feb 17.

PMID:
22386631
26.

Fungal adaptation to extremely high salt concentrations.

Gostinčar C, Lenassi M, Gunde-Cimerman N, Plemenitaš A.

Adv Appl Microbiol. 2011;77:71-96. doi: 10.1016/B978-0-12-387044-5.00003-0.

PMID:
22050822
27.

Evolution of fungal pathogens in domestic environments?

Gostinčar C, Grube M, Gunde-Cimerman N.

Fungal Biol. 2011 Oct;115(10):1008-18. doi: 10.1016/j.funbio.2011.03.004. Epub 2011 Mar 15. Review.

PMID:
21944213
28.

Adaptation of the glycerol-3-phosphate dehydrogenase Gpd1 to high salinities in the extremely halotolerant Hortaea werneckii and halophilic Wallemia ichthyophaga.

Lenassi M, Zajc J, Gostinčar C, Gorjan A, Gunde-Cimerman N, Plemenitaš A.

Fungal Biol. 2011 Oct;115(10):959-70. doi: 10.1016/j.funbio.2011.04.001. Epub 2011 May 7.

PMID:
21944208
29.

Bacterial communities in the 'petola' microbial mat from the Sečovlje salterns (Slovenia).

Tkavc R, Gostinčar C, Turk M, Visscher PT, Oren A, Gunde-Cimerman N.

FEMS Microbiol Ecol. 2011 Jan;75(1):48-62. doi: 10.1111/j.1574-6941.2010.00985.x. Epub 2010 Nov 9.

30.

The evolution of fatty acid desaturases and cytochrome b5 in eukaryotes.

Gostincar C, Turk M, Gunde-Cimerman N.

J Membr Biol. 2010 Feb;233(1-3):63-72. doi: 10.1007/s00232-010-9225-x. Epub 2010 Feb 10.

PMID:
20146059
31.

Extremotolerance in fungi: evolution on the edge.

Gostincar C, Grube M, de Hoog S, Zalar P, Gunde-Cimerman N.

FEMS Microbiol Ecol. 2010 Jan;71(1):2-11. doi: 10.1111/j.1574-6941.2009.00794.x. Review.

32.

The expressions of Delta 9-, Delta 12-desaturases and an elongase by the extremely halotolerant black yeast Hortaea werneckii are salt dependent.

Gostincar C, Turk M, Plemenitas A, Gunde-Cimerman N.

FEMS Yeast Res. 2009 Mar;9(2):247-56. doi: 10.1111/j.1567-1364.2009.00481.x.

33.

Expression of fatty-acid-modifying enzymes in the halotolerant black yeast Aureobasidium pullulans (de Bary) G. Arnaud under salt stress.

Gostincar C, Turk M, Trbuha T, Vaupotic T, Plemenitas A, Gunde-Cimerman N.

Stud Mycol. 2008;61:51-9. doi: 10.3114/sim.2008.61.04.

34.

Redefinition of Aureobasidium pullulans and its varieties.

Zalar P, Gostincar C, de Hoog GS, Ursic V, Sudhadham M, Gunde-Cimerman N.

Stud Mycol. 2008;61:21-38. doi: 10.3114/sim.2008.61.02.

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