Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 19

1.

Automated Visualization of Genetic Designs Using DNAplotlib.

Bartoli V, Dixon DOR, Gorochowski TE.

Methods Mol Biol. 2018;1772:399-409. doi: 10.1007/978-1-4939-7795-6_22.

PMID:
29754241
2.

Organization of feed-forward loop motifs reveals architectural principles in natural and engineered networks.

Gorochowski TE, Grierson CS, di Bernardo M.

Sci Adv. 2018 Mar 28;4(3):eaap9751. doi: 10.1126/sciadv.aap9751. eCollection 2018 Mar.

3.

Burden-driven feedback control of gene expression.

Ceroni F, Boo A, Furini S, Gorochowski TE, Borkowski O, Ladak YN, Awan AR, Gilbert C, Stan GB, Ellis T.

Nat Methods. 2018 May;15(5):387-393. doi: 10.1038/nmeth.4635. Epub 2018 Mar 26.

PMID:
29578536
4.

Genetic circuit characterization and debugging using RNA-seq.

Gorochowski TE, Espah Borujeni A, Park Y, Nielsen AA, Zhang J, Der BS, Gordon DB, Voigt CA.

Mol Syst Biol. 2017 Nov 9;13(11):952. doi: 10.15252/msb.20167461.

5.

A standard-enabled workflow for synthetic biology.

Myers CJ, Beal J, Gorochowski TE, Kuwahara H, Madsen C, McLaughlin JA, Mısırlı G, Nguyen T, Oberortner E, Samineni M, Wipat A, Zhang M, Zundel Z.

Biochem Soc Trans. 2017 Jun 15;45(3):793-803. doi: 10.1042/BST20160347. Review.

PMID:
28620041
6.

Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration.

Woodruff LBA, Gorochowski TE, Roehner N, Mikkelsen TS, Densmore D, Gordon DB, Nicol R, Voigt CA.

Nucleic Acids Res. 2017 Feb 17;45(3):1567-1568. doi: 10.1093/nar/gkx032. No abstract available.

7.

Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration.

Woodruff LBA, Gorochowski TE, Roehner N, Mikkelsen TS, Densmore D, Gordon DB, Nicol R, Voigt CA.

Nucleic Acids Res. 2017 Feb 17;45(3):1553-1565. doi: 10.1093/nar/gkw1226. Erratum in: Nucleic Acids Res. 2017 Feb 17;45(3):1567-1568.

8.

Agent-based modelling in synthetic biology.

Gorochowski TE.

Essays Biochem. 2016 Nov 30;60(4):325-336. Review.

9.

DNAplotlib: Programmable Visualization of Genetic Designs and Associated Data.

Der BS, Glassey E, Bartley BA, Enghuus C, Goodman DB, Gordon DB, Voigt CA, Gorochowski TE.

ACS Synth Biol. 2017 Jul 21;6(7):1115-1119. doi: 10.1021/acssynbio.6b00252. Epub 2016 Oct 27.

PMID:
27744689
10.

A Minimal Model of Ribosome Allocation Dynamics Captures Trade-offs in Expression between Endogenous and Synthetic Genes.

Gorochowski TE, Avcilar-Kucukgoze I, Bovenberg RA, Roubos JA, Ignatova Z.

ACS Synth Biol. 2016 Jul 15;5(7):710-20. doi: 10.1021/acssynbio.6b00040. Epub 2016 May 3.

11.

Memory and Combinatorial Logic Based on DNA Inversions: Dynamics and Evolutionary Stability.

Fernandez-Rodriguez J, Yang L, Gorochowski TE, Gordon DB, Voigt CA.

ACS Synth Biol. 2015 Dec 18;4(12):1361-72. doi: 10.1021/acssynbio.5b00170. Epub 2015 Nov 24.

PMID:
26548807
12.

Beyond contact-based transmission networks: the role of spatial coincidence.

Richardson TO, Gorochowski TE.

J R Soc Interface. 2015 Oct 6;12(111):20150705. doi: 10.1098/rsif.2015.0705.

13.

Trade-offs between tRNA abundance and mRNA secondary structure support smoothing of translation elongation rate.

Gorochowski TE, Ignatova Z, Bovenberg RA, Roubos JA.

Nucleic Acids Res. 2015 Mar 31;43(6):3022-32. doi: 10.1093/nar/gkv199. Epub 2015 Mar 12.

14.

Computational modeling and analysis of hippocampal-prefrontal information coding during a spatial decision-making task.

Jahans-Price T, Gorochowski TE, Wilson MA, Jones MW, Bogacz R.

Front Behav Neurosci. 2014 Mar 3;8:62. doi: 10.3389/fnbeh.2014.00062. eCollection 2014.

15.

Using synthetic biological parts and microbioreactors to explore the protein expression characteristics of Escherichia coli.

Gorochowski TE, van den Berg E, Kerkman R, Roubos JA, Bovenberg RA.

ACS Synth Biol. 2014 Mar 21;3(3):129-39. doi: 10.1021/sb4001245. Epub 2013 Dec 10.

PMID:
24299494
16.

Translational sensitivity of the Escherichia coli genome to fluctuating tRNA availability.

Wohlgemuth SE, Gorochowski TE, Roubos JA.

Nucleic Acids Res. 2013 Sep;41(17):8021-33. doi: 10.1093/nar/gkt602. Epub 2013 Jul 10.

17.

BSim: an agent-based tool for modeling bacterial populations in systems and synthetic biology.

Gorochowski TE, Matyjaszkiewicz A, Todd T, Oak N, Kowalska K, Reid S, Tsaneva-Atanasova KT, Savery NJ, Grierson CS, di Bernardo M.

PLoS One. 2012;7(8):e42790. doi: 10.1371/journal.pone.0042790. Epub 2012 Aug 24.

18.

Using aging to visually uncover evolutionary processes on networks.

Gorochowski TE, di Bernardo M, Grierson CS.

IEEE Trans Vis Comput Graph. 2012 Aug;18(8):1343-52.

PMID:
21860063
19.

Evolving enhanced topologies for the synchronization of dynamical complex networks.

Gorochowski TE, di Bernardo M, Grierson CS.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 May;81(5 Pt 2):056212. Epub 2010 May 21.

PMID:
20866312

Supplemental Content

Loading ...
Support Center