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Items: 35

1.

A heuristic method for fast and accurate phasing and imputation of single-nucleotide polymorphism data in bi-parental plant populations.

Gonen S, Wimmer V, Gaynor RC, Byrne E, Gorjanc G, Hickey JM.

Theor Appl Genet. 2018 Aug 4. doi: 10.1007/s00122-018-3156-9. [Epub ahead of print]

PMID:
30078163
2.

Genomic Prediction Using Individual-Level Data and Summary Statistics from Multiple Populations.

Vandenplas J, Calus MPL, Gorjanc G.

Genetics. 2018 Jul 18. pii: genetics.301109.2018. doi: 10.1534/genetics.118.301109. [Epub ahead of print]

3.

Optimal cross selection for long-term genetic gain in two-part programs with rapid recurrent genomic selection.

Gorjanc G, Gaynor RC, Hickey JM.

Theor Appl Genet. 2018 Jun 6. doi: 10.1007/s00122-018-3125-3. [Epub ahead of print]

PMID:
29876589
4.

AlphaMate: a program for optimising selection, maintenance of diversity, and mate allocation in breeding programs.

Gorjanc G, Hickey JM.

Bioinformatics. 2018 May 2. doi: 10.1093/bioinformatics/bty375. [Epub ahead of print]

PMID:
29722792
5.

Corrigendum: Genetic identification of thiosulfate sulfurtransferase as an adipocyte-expressed antidiabetic target in mice selected for leanness.

Morton NM, Beltram J, Carter RN, Michailidou Z, Gorjanc G, McFadden C, Barrios-Llerena ME, Rodriguez-Cuenca S, Gibbins MTG, Aird RE, Moreno-Navarrete JM, Munger SC, Svenson KL, Gastaldello A, Ramage L, Naredo G, Zeyda M, Wang ZV, Howie AF, Saari A, Sipilä P, Stulnig TM, Gudnason V, Kenyon CJ, Seckl JR, Walker BR, Webster SP, Dunbar DR, Churchill GA, Vidal-Puig A, Fernandez-Real JM, Emilsson V, Horvat S.

Nat Med. 2018 Apr 10;24(4):525. doi: 10.1038/nm0418-525e.

PMID:
29634685
6.

A method for allocating low-coverage sequencing resources by targeting haplotypes rather than individuals.

Ros-Freixedes R, Gonen S, Gorjanc G, Hickey JM.

Genet Sel Evol. 2017 Oct 25;49(1):78. doi: 10.1186/s12711-017-0353-y.

7.

The potential of shifting recombination hotspots to increase genetic gain in livestock breeding.

Gonen S, Battagin M, Johnston SE, Gorjanc G, Hickey JM.

Genet Sel Evol. 2017 Jul 4;49(1):55. doi: 10.1186/s12711-017-0330-5.

8.

A method for the allocation of sequencing resources in genotyped livestock populations.

Gonen S, Ros-Freixedes R, Battagin M, Gorjanc G, Hickey JM.

Genet Sel Evol. 2017 May 18;49(1):47. doi: 10.1186/s12711-017-0322-5.

9.

A hybrid method for the imputation of genomic data in livestock populations.

Antolín R, Nettelblad C, Gorjanc G, Money D, Hickey JM.

Genet Sel Evol. 2017 Mar 3;49(1):30. doi: 10.1186/s12711-017-0300-y.

10.

Potential of gene drives with genome editing to increase genetic gain in livestock breeding programs.

Gonen S, Jenko J, Gorjanc G, Mileham AJ, Whitelaw CB, Hickey JM.

Genet Sel Evol. 2017 Jan 4;49(1):3. doi: 10.1186/s12711-016-0280-3.

11.

AlphaSim: Software for Breeding Program Simulation.

Faux AM, Gorjanc G, Gaynor RC, Battagin M, Edwards SM, Wilson DL, Hearne SJ, Gonen S, Hickey JM.

Plant Genome. 2016 Nov;9(3). doi: 10.3835/plantgenome2016.02.0013.

12.

National single-step genomic method that integrates multi-national genomic information.

Vandenplas J, Spehar M, Potocnik K, Gengler N, Gorjanc G.

J Dairy Sci. 2017 Jan;100(1):465-478. doi: 10.3168/jds.2016-11733. Epub 2016 Nov 17.

PMID:
27865486
13.

Effect of manipulating recombination rates on response to selection in livestock breeding programs.

Battagin M, Gorjanc G, Faux AM, Johnston SE, Hickey JM.

Genet Sel Evol. 2016 Jun 22;48(1):44. doi: 10.1186/s12711-016-0221-1.

14.

Genetic identification of thiosulfate sulfurtransferase as an adipocyte-expressed antidiabetic target in mice selected for leanness.

Morton NM, Beltram J, Carter RN, Michailidou Z, Gorjanc G, McFadden C, Barrios-Llerena ME, Rodriguez-Cuenca S, Gibbins MT, Aird RE, Moreno-Navarrete JM, Munger SC, Svenson KL, Gastaldello A, Ramage L, Naredo G, Zeyda M, Wang ZV, Howie AF, Saari A, Sipilä P, Stulnig TM, Gudnason V, Kenyon CJ, Seckl JR, Walker BR, Webster SP, Dunbar DR, Churchill GA, Vidal-Puig A, Fernandez-Real JM, Emilsson V, Horvat S.

Nat Med. 2016 Jul;22(7):771-9. doi: 10.1038/nm.4115. Epub 2016 Jun 6. Erratum in: Nat Med. 2018 Apr 10;24(4):525.

15.

Promotion of alleles by genome editing in livestock breeding programmes.

Hickey JM, Bruce C, Whitelaw A, Gorjanc G.

J Anim Breed Genet. 2016 Apr;133(2):83-4. doi: 10.1111/jbg.12206. No abstract available.

PMID:
26995217
16.

Initiating maize pre-breeding programs using genomic selection to harness polygenic variation from landrace populations.

Gorjanc G, Jenko J, Hearne SJ, Hickey JM.

BMC Genomics. 2016 Jan 5;17:30. doi: 10.1186/s12864-015-2345-z.

17.

Erratum to: Potential of promotion of alleles by genome editing to improve quantitative traits in livestock breeding programs.

Jenko J, Gorjanc G, Cleveland MA, Varshney RK, Whitelaw CB, Woolliams JA, Hickey JM.

Genet Sel Evol. 2015 Sep 11;47:69. doi: 10.1186/s12711-015-0144-2. No abstract available.

18.

Reliability of pedigree-based and genomic evaluations in selected populations.

Gorjanc G, Bijma P, Hickey JM.

Genet Sel Evol. 2015 Aug 14;47:65. doi: 10.1186/s12711-015-0145-1.

19.

Partition of genetic trends by origin in Landrace and Large-White pigs.

Škorput D, Gorjanc G, Kasap A, Luković Z.

Animal. 2015 Oct;9(10):1605-9. doi: 10.1017/S1751731115001056. Epub 2015 Jul 8.

PMID:
26152894
20.

Potential of promotion of alleles by genome editing to improve quantitative traits in livestock breeding programs.

Jenko J, Gorjanc G, Cleveland MA, Varshney RK, Whitelaw CB, Woolliams JA, Hickey JM.

Genet Sel Evol. 2015 Jul 2;47:55. doi: 10.1186/s12711-015-0135-3. Erratum in: Genet Sel Evol. 2015;47:69.

21.

Recovery of native genetic background in admixed populations using haplotypes, phenotypes, and pedigree information--using Cika cattle as a case breed.

Simčič M, Smetko A, Sölkner J, Seichter D, Gorjanc G, Kompan D, Medugorac I.

PLoS One. 2015 Apr 29;10(4):e0123253. doi: 10.1371/journal.pone.0123253. eCollection 2015.

22.

Potential of genotyping-by-sequencing for genomic selection in livestock populations.

Gorjanc G, Cleveland MA, Houston RD, Hickey JM.

Genet Sel Evol. 2015 Mar 1;47:12. doi: 10.1186/s12711-015-0102-z.

23.

AlphaMPSim: flexible simulation of multi-parent crosses.

Hickey JM, Gorjanc G, Hearne S, Huang BE.

Bioinformatics. 2014 Sep 15;30(18):2686-8. doi: 10.1093/bioinformatics/btu206. Epub 2014 May 28.

PMID:
24872425
24.

Comparison between sire-maternal grandsire and animal models for genetic evaluation of longevity in a dairy cattle population with small herds.

Jenko J, Gorjanc G, Kovač M, Ducrocq V.

J Dairy Sci. 2013;96(12):8002-13. doi: 10.3168/jds.2013-6830. Epub 2013 Oct 12.

PMID:
24124654
25.

The contribution of dominance and inbreeding depression in estimating variance components for litter size in Pannon White rabbits.

Nagy I, Gorjanc G, Curik I, Farkas J, Kiszlinger H, Szendrő Z.

J Anim Breed Genet. 2013 Aug;130(4):303-11. doi: 10.1111/jbg.12022. Epub 2012 Dec 28.

PMID:
23855632
26.

Genomic evaluations using similarity between haplotypes.

Hickey JM, Kinghorn BP, Tier B, Clark SA, van der Werf JH, Gorjanc G.

J Anim Breed Genet. 2013 Aug;130(4):259-69. doi: 10.1111/jbg.12020. Epub 2012 Dec 29.

PMID:
23855628
27.

Genotype imputation to increase sample size in pedigreed populations.

Hickey JM, Cleveland MA, Maltecca C, Gorjanc G, Gredler B, Kranis A.

Methods Mol Biol. 2013;1019:395-410. doi: 10.1007/978-1-62703-447-0_17.

PMID:
23756901
28.

Genetic prediction of complex traits: integrating infinitesimal and marked genetic effects.

Carré C, Gamboa F, Cros D, Hickey JM, Gorjanc G, Manfredi E.

Genetica. 2013 Jun;141(4-6):239-46. doi: 10.1007/s10709-013-9722-9. Epub 2013 May 30.

29.

Simulated data for genomic selection and genome-wide association studies using a combination of coalescent and gene drop methods.

Hickey JM, Gorjanc G.

G3 (Bethesda). 2012 Apr;2(4):425-7. doi: 10.1534/g3.111.001297. Epub 2012 Apr 1.

30.

Effects of two probiotic additives containing Bacillus spores on carcass characteristics, blood lipids and cecal volatile fatty acids in meat type chickens.

Novak R, Bogovič Matijašić B, Terčič D, Cervek M, Gorjanc G, Holcman A, Levart A, Rogelj I.

J Anim Physiol Anim Nutr (Berl). 2011 Aug;95(4):424-33. doi: 10.1111/j.1439-0396.2010.01068.x. Epub 2010 Oct 29.

PMID:
21039931
31.

Congenic and bioinformatics analyses resolved a major-effect Fob3b QTL on mouse Chr 15 into two closely linked loci.

Prevorsek Z, Gorjanc G, Paigen B, Horvat S.

Mamm Genome. 2010 Apr;21(3-4):172-85. doi: 10.1007/s00335-010-9252-z. Epub 2010 Mar 5.

PMID:
20204375
32.

Evaluation of different approaches for the estimation of daily yield from single milk testing scheme in cattle.

Jenko J, Perpar T, Gorjanc G, Babnik D.

J Dairy Res. 2010 May;77(2):137-43. doi: 10.1017/S0022029909990586. Epub 2009 Dec 24.

PMID:
20030901
33.

Porous concrete block as an environmental enrichment device increases activity of laying hens in cages.

Holcman A, Gorjanc G, Stuhec I.

Poult Sci. 2008 Sep;87(9):1714-9. doi: 10.3382/ps.2008-00113.

PMID:
18753437
34.

Genotoxicity evaluation of water soil leachates by Ames test, comet assay, and preliminary Tradescantia micronucleus assay.

Lah B, Vidic T, Glasencnik E, Cepeljnik T, Gorjanc G, Marinsek-Logar R.

Environ Monit Assess. 2008 Apr;139(1-3):107-18. Epub 2007 Jun 14.

PMID:
17566864
35.

Comet assay assessment of wastewater genotoxicity using yeast cells.

Lah B, Gorjanc G, Nekrep FV, Marinsek-Logar R.

Bull Environ Contam Toxicol. 2004 Mar;72(3):607-16. No abstract available.

PMID:
15114463

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