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Items: 23

1.

The evolutionary history of dogs in the Americas.

Ní Leathlobhair M, Perri AR, Irving-Pease EK, Witt KE, Linderholm A, Haile J, Lebrasseur O, Ameen C, Blick J, Boyko AR, Brace S, Cortes YN, Crockford SJ, Devault A, Dimopoulos EA, Eldridge M, Enk J, Gopalakrishnan S, Gori K, Grimes V, Guiry E, Hansen AJ, Hulme-Beaman A, Johnson J, Kitchen A, Kasparov AK, Kwon YM, Nikolskiy PA, Lope CP, Manin A, Martin T, Meyer M, Myers KN, Omura M, Rouillard JM, Pavlova EY, Sciulli P, Sinding MS, Strakova A, Ivanova VV, Widga C, Willerslev E, Pitulko VV, Barnes I, Gilbert MTP, Dobney KM, Malhi RS, Murchison EP, Larson G, Frantz LAF.

Science. 2018 Jul 6;361(6397):81-85. doi: 10.1126/science.aao4776.

PMID:
29976825
2.

The Origins and Vulnerabilities of Two Transmissible Cancers in Tasmanian Devils.

Stammnitz MR, Coorens THH, Gori KC, Hayes D, Fu B, Wang J, Martin-Herranz DE, Alexandrov LB, Baez-Ortega A, Barthorpe S, Beck A, Giordano F, Knowles GW, Kwon YM, Hall G, Price S, Pye RJ, Tubio JMC, Siddle HVT, Sohal SS, Woods GM, McDermott U, Yang F, Garnett MJ, Ning Z, Murchison EP.

Cancer Cell. 2018 Apr 9;33(4):607-619.e15. doi: 10.1016/j.ccell.2018.03.013.

3.

Computational approaches for discovery of mutational signatures in cancer.

Baez-Ortega A, Gori K.

Brief Bioinform. 2017 Jul 31. doi: 10.1093/bib/bbx082. [Epub ahead of print]

PMID:
28968631
4.

Assessing the potential of RAD-sequencing to resolve phylogenetic relationships within species radiations: The fly genus Chiastocheta (Diptera: Anthomyiidae) as a case study.

Suchan T, Espíndola A, Rutschmann S, Emerson BC, Gori K, Dessimoz C, Arrigo N, Ronikier M, Alvarez N.

Mol Phylogenet Evol. 2017 Sep;114:189-198. doi: 10.1016/j.ympev.2017.06.012. Epub 2017 Jun 21.

PMID:
28645767
5.

Clustering Genes of Common Evolutionary History.

Gori K, Suchan T, Alvarez N, Goldman N, Dessimoz C.

Mol Biol Evol. 2016 Jun;33(6):1590-605. doi: 10.1093/molbev/msw038. Epub 2016 Feb 17.

6.

The draft genome sequence of the ferret (Mustela putorius furo) facilitates study of human respiratory disease.

Peng X, Alföldi J, Gori K, Eisfeld AJ, Tyler SR, Tisoncik-Go J, Brawand D, Law GL, Skunca N, Hatta M, Gasper DJ, Kelly SM, Chang J, Thomas MJ, Johnson J, Berlin AM, Lara M, Russell P, Swofford R, Turner-Maier J, Young S, Hourlier T, Aken B, Searle S, Sun X, Yi Y, Suresh M, Tumpey TM, Siepel A, Wisely SM, Dessimoz C, Kawaoka Y, Birren BW, Lindblad-Toh K, Di Palma F, Engelhardt JF, Palermo RE, Katze MG.

Nat Biotechnol. 2014 Dec;32(12):1250-5. doi: 10.1038/nbt.3079. Epub 2014 Nov 17.

7.

The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements.

Altenhoff AM, Škunca N, Glover N, Train CM, Sueki A, Piližota I, Gori K, Tomiczek B, Müller S, Redestig H, Gonnet GH, Dessimoz C.

Nucleic Acids Res. 2015 Jan;43(Database issue):D240-9. doi: 10.1093/nar/gku1158. Epub 2014 Nov 15.

8.

Who watches the watchmen? An appraisal of benchmarks for multiple sequence alignment.

Iantorno S, Gori K, Goldman N, Gil M, Dessimoz C.

Methods Mol Biol. 2014;1079:59-73. doi: 10.1007/978-1-62703-646-7_4. Review.

PMID:
24170395
9.

Genetic and archaeological perspectives on the initial modern human colonization of southern Asia.

Mellars P, Gori KC, Carr M, Soares PA, Richards MB.

Proc Natl Acad Sci U S A. 2013 Jun 25;110(26):10699-704. doi: 10.1073/pnas.1306043110. Epub 2013 Jun 10.

10.

Isolation and identification of the microbiota of Danish farmhouse and industrially produced surface-ripened cheeses.

Gori K, Ryssel M, Arneborg N, Jespersen L.

Microb Ecol. 2013 Apr;65(3):602-15. doi: 10.1007/s00248-012-0138-3. Epub 2012 Dec 7.

11.

Debaryomyces hansenii strains differ in their production of flavor compounds in a cheese-surface model.

Gori K, Sørensen LM, Petersen MA, Jespersen L, Arneborg N.

Microbiologyopen. 2012 Jun;1(2):161-8. doi: 10.1002/mbo3.11.

12.

Alcohol-based quorum sensing plays a role in adhesion and sliding motility of the yeast Debaryomyces hansenii.

Gori K, Knudsen PB, Nielsen KF, Arneborg N, Jespersen L.

FEMS Yeast Res. 2011 Dec;11(8):643-52. doi: 10.1111/j.1567-1364.2011.00755.x. Epub 2011 Oct 20.

13.

Occurrence and identification of yeast species in fermented liquid feed for piglets.

Gori K, Bjørklund MK, Canibe N, Pedersen AØ, Jespersen L.

Microb Ecol. 2011 Jan;61(1):146-53. doi: 10.1007/s00248-010-9706-6. Epub 2010 Jun 24.

PMID:
20574824
14.

Saccharomyces cerevisiae CCMI 885 secretes peptides that inhibit the growth of some non-Saccharomyces wine-related strains.

Albergaria H, Francisco D, Gori K, Arneborg N, Gírio F.

Appl Microbiol Biotechnol. 2010 Apr;86(3):965-72. doi: 10.1007/s00253-009-2409-6. Epub 2009 Dec 29.

PMID:
20039034
15.

AI-2 signalling is induced by acidic shock in probiotic strains of Lactobacillus spp.

Moslehi-Jenabian S, Gori K, Jespersen L.

Int J Food Microbiol. 2009 Nov 15;135(3):295-302. doi: 10.1016/j.ijfoodmicro.2009.08.011. Epub 2009 Aug 14.

PMID:
19748697
16.
17.

Proteomic changes in Debaryomyces hansenii upon exposure to NaCl stress.

Gori K, Hébraud M, Chambon C, Mortensen HD, Arneborg N, Jespersen L.

FEMS Yeast Res. 2007 Mar;7(2):293-303.

18.

Relationship between growth and pH gradients of individual cells of Debaryomyces hansenii as influenced by NaCl and solid substrate.

Mortensen HD, Gori K, Siegumfeldt H, Jespersen L, Arneborg N.

Lett Appl Microbiol. 2007 Mar;44(3):279-85.

19.
20.

Intracellular pH homeostasis plays a role in the NaCl tolerance of Debaryomyces hansenii strains.

Mortensen HD, Gori K, Siegumfeldt H, Nissen P, Jespersen L, Arneborg N.

Appl Microbiol Biotechnol. 2006 Aug;71(5):713-9. Epub 2005 Oct 21.

PMID:
16240114
21.
22.

Analysis of the immunological cross reactivities of 213 well characterized monoclonal antibodies with specificities against various leucocyte surface antigens of human and 11 animal species.

Brodersen R, Bijlsma F, Gori K, Jensen KT, Chen W, Dominguez J, Haverson K, Moore PF, Saalmüller A, Sachs D, Slierendrecht WJ, Stokes C, Vainio O, Zuckermann F, Aasted B.

Vet Immunol Immunopathol. 1998 Jun 30;64(1):1-13.

PMID:
9656427
23.

Immunoprecipitation studies of monoclonal antibodies submitted to the Second International Swine CD Workshop.

Aasted B, Gori K, Dominguez J, Ezquerra A, Bullido R, Arn S, Bianchi A, Binns R, Chu RM, Davis WC, Denham S, Haverson K, Jensen KT, Kim YB, Magyar A, Petersen KR, Saalmüller A, Sachs D, Schütt C, Shimizu M, Stokes C, Whittall T, Yang H, Zuckermann F.

Vet Immunol Immunopathol. 1998 Jan 30;60(3-4):229-36. No abstract available.

PMID:
9589561

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