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Items: 37

1.

Reward Learning over Weeks Versus Minutes Increases the Neural Representation of Value in the Human Brain.

Wimmer GE, Li JK, Gorgolewski KJ, Poldrack RA.

J Neurosci. 2018 Aug 29;38(35):7649-7666. doi: 10.1523/JNEUROSCI.0075-18.2018. Epub 2018 Jul 30.

PMID:
30061189
2.

MEG-BIDS, the brain imaging data structure extended to magnetoencephalography.

Niso G, Gorgolewski KJ, Bock E, Brooks TL, Flandin G, Gramfort A, Henson RN, Jas M, Litvak V, T Moreau J, Oostenveld R, Schoffelen JM, Tadel F, Wexler J, Baillet S.

Sci Data. 2018 Jun 19;5:180110. doi: 10.1038/sdata.2018.110.

3.

Boutiques: a flexible framework to integrate command-line applications in computing platforms.

Glatard T, Kiar G, Aumentado-Armstrong T, Beck N, Bellec P, Bernard R, Bonnet A, Brown ST, Camarasu-Pop S, Cervenansky F, Das S, Ferreira da Silva R, Flandin G, Girard P, Gorgolewski KJ, Guttmann CRG, Hayot-Sasson V, Quirion PO, Rioux P, Rousseau MÉ, Evans AC.

Gigascience. 2018 May 1;7(5). doi: 10.1093/gigascience/giy016.

4.

Preprocessed Consortium for Neuropsychiatric Phenomics dataset.

Gorgolewski KJ, Durnez J, Poldrack RA.

Version 2. F1000Res. 2017 Jul 28 [revised 2017 Jan 1];6:1262. doi: 10.12688/f1000research.11964.2. eCollection 2017.

5.

Decoding brain activity using a large-scale probabilistic functional-anatomical atlas of human cognition.

Rubin TN, Koyejo O, Gorgolewski KJ, Jones MN, Poldrack RA, Yarkoni T.

PLoS Comput Biol. 2017 Oct 23;13(10):e1005649. doi: 10.1371/journal.pcbi.1005649. eCollection 2017 Oct.

6.

MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites.

Esteban O, Birman D, Schaer M, Koyejo OO, Poldrack RA, Gorgolewski KJ.

PLoS One. 2017 Sep 25;12(9):e0184661. doi: 10.1371/journal.pone.0184661. eCollection 2017.

7.

Science in the cloud (SIC): A use case in MRI connectomics.

Kiar G, Gorgolewski KJ, Kleissas D, Roncal WG, Litt B, Wandell B, Poldrack RA, Wiener M, Vogelstein RJ, Burns R, Vogelstein JT.

Gigascience. 2017 May 1;6(5):1-10. doi: 10.1093/gigascience/gix013.

8.

BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods.

Gorgolewski KJ, Alfaro-Almagro F, Auer T, Bellec P, Capotă M, Chakravarty MM, Churchill NW, Cohen AL, Craddock RC, Devenyi GA, Eklund A, Esteban O, Flandin G, Ghosh SS, Guntupalli JS, Jenkinson M, Keshavan A, Kiar G, Liem F, Raamana PR, Raffelt D, Steele CJ, Quirion PO, Smith RE, Strother SC, Varoquaux G, Wang Y, Yarkoni T, Poldrack RA.

PLoS Comput Biol. 2017 Mar 9;13(3):e1005209. doi: 10.1371/journal.pcbi.1005209. eCollection 2017 Mar.

9.

A Coordinate-Based Meta-Analysis of Overlaps in Regional Specialization and Functional Connectivity across Subjective Value and Default Mode Networks.

Acikalin MY, Gorgolewski KJ, Poldrack RA.

Front Neurosci. 2017 Jan 19;11:1. doi: 10.3389/fnins.2017.00001. eCollection 2017.

10.

Scanning the horizon: towards transparent and reproducible neuroimaging research.

Poldrack RA, Baker CI, Durnez J, Gorgolewski KJ, Matthews PM, Munafò MR, Nichols TE, Poline JB, Vul E, Yarkoni T.

Nat Rev Neurosci. 2017 Feb;18(2):115-126. doi: 10.1038/nrn.2016.167. Epub 2017 Jan 5. Review.

11.

A phenome-wide examination of neural and cognitive function.

Poldrack RA, Congdon E, Triplett W, Gorgolewski KJ, Karlsgodt KH, Mumford JA, Sabb FW, Freimer NB, London ED, Cannon TD, Bilder RM.

Sci Data. 2016 Dec 6;3:160110. doi: 10.1038/sdata.2016.110.

12.

Sharing brain mapping statistical results with the neuroimaging data model.

Maumet C, Auer T, Bowring A, Chen G, Das S, Flandin G, Ghosh S, Glatard T, Gorgolewski KJ, Helmer KG, Jenkinson M, Keator DB, Nichols BN, Poline JB, Reynolds R, Sochat V, Turner J, Nichols TE.

Sci Data. 2016 Dec 6;3:160102. doi: 10.1038/sdata.2016.102.

13.

The Dynamics of Functional Brain Networks: Integrated Network States during Cognitive Task Performance.

Shine JM, Bissett PG, Bell PT, Koyejo O, Balsters JH, Gorgolewski KJ, Moodie CA, Poldrack RA.

Neuron. 2016 Oct 19;92(2):544-554. doi: 10.1016/j.neuron.2016.09.018. Epub 2016 Sep 29.

14.

A Practical Guide for Improving Transparency and Reproducibility in Neuroimaging Research.

Gorgolewski KJ, Poldrack RA.

PLoS Biol. 2016 Jul 7;14(7):e1002506. doi: 10.1371/journal.pbio.1002506. eCollection 2016 Jul.

15.

The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments.

Gorgolewski KJ, Auer T, Calhoun VD, Craddock RC, Das S, Duff EP, Flandin G, Ghosh SS, Glatard T, Halchenko YO, Handwerker DA, Hanke M, Keator D, Li X, Michael Z, Maumet C, Nichols BN, Nichols TE, Pellman J, Poline JB, Rokem A, Schaefer G, Sochat V, Triplett W, Turner JA, Varoquaux G, Poldrack RA.

Sci Data. 2016 Jun 21;3:160044. doi: 10.1038/sdata.2016.44.

16.

A structural and functional magnetic resonance imaging dataset of brain tumour patients.

Pernet CR, Gorgolewski KJ, Job D, Rodriguez D, Whittle I, Wardlaw J.

Sci Data. 2016 Feb 2;3:160003. doi: 10.1038/sdata.2016.3.

17.

Evaluation of a pre-surgical functional MRI workflow: From data acquisition to reporting.

Pernet CR, Gorgolewski KJ, Job D, Rodriguez D, Storkey A, Whittle I, Wardlaw J.

Int J Med Inform. 2016 Feb;86:37-42. doi: 10.1016/j.ijmedinf.2015.11.014. Epub 2015 Nov 30.

PMID:
26725693
18.

Long-term neural and physiological phenotyping of a single human.

Poldrack RA, Laumann TO, Koyejo O, Gregory B, Hover A, Chen MY, Gorgolewski KJ, Luci J, Joo SJ, Boyd RL, Hunicke-Smith S, Simpson ZB, Caven T, Sochat V, Shine JM, Gordon E, Snyder AZ, Adeyemo B, Petersen SE, Glahn DC, Reese Mckay D, Curran JE, Göring HH, Carless MA, Blangero J, Dougherty R, Leemans A, Handwerker DA, Frick L, Marcotte EM, Mumford JA.

Nat Commun. 2015 Dec 9;6:8885. doi: 10.1038/ncomms9885.

19.

Effects of thresholding on correlation-based image similarity metrics.

Sochat VV, Gorgolewski KJ, Koyejo O, Durnez J, Poldrack RA.

Front Neurosci. 2015 Oct 29;9:418. doi: 10.3389/fnins.2015.00418. eCollection 2015.

20.

Estimation of dynamic functional connectivity using Multiplication of Temporal Derivatives.

Shine JM, Koyejo O, Bell PT, Gorgolewski KJ, Gilat M, Poldrack RA.

Neuroimage. 2015 Nov 15;122:399-407. doi: 10.1016/j.neuroimage.2015.07.064. Epub 2015 Jul 29.

PMID:
26231247
21.

The human voice areas: Spatial organization and inter-individual variability in temporal and extra-temporal cortices.

Pernet CR, McAleer P, Latinus M, Gorgolewski KJ, Charest I, Bestelmeyer PE, Watson RH, Fleming D, Crabbe F, Valdes-Sosa M, Belin P.

Neuroimage. 2015 Oct 1;119:164-74. doi: 10.1016/j.neuroimage.2015.06.050. Epub 2015 Jun 24.

22.

OpenfMRI: Open sharing of task fMRI data.

Poldrack RA, Gorgolewski KJ.

Neuroimage. 2017 Jan;144(Pt B):259-261. doi: 10.1016/j.neuroimage.2015.05.073. Epub 2015 Jun 3.

23.

A high resolution 7-Tesla resting-state fMRI test-retest dataset with cognitive and physiological measures.

Gorgolewski KJ, Mendes N, Wilfling D, Wladimirow E, Gauthier CJ, Bonnen T, Ruby FJ, Trampel R, Bazin PL, Cozatl R, Smallwood J, Margulies DS.

Sci Data. 2015 Jan 20;2:140054. doi: 10.1038/sdata.2014.54. eCollection 2015.

24.

NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain.

Gorgolewski KJ, Varoquaux G, Rivera G, Schwarz Y, Ghosh SS, Maumet C, Sochat VV, Nichols TE, Poldrack RA, Poline JB, Yarkoni T, Margulies DS.

Front Neuroinform. 2015 Apr 10;9:8. doi: 10.3389/fninf.2015.00008. eCollection 2015.

25.

NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain.

Gorgolewski KJ, Varoquaux G, Rivera G, Schwartz Y, Sochat VV, Ghosh SS, Maumet C, Nichols TE, Poline JB, Yarkoni T, Margulies DS, Poldrack RA.

Neuroimage. 2016 Jan 1;124(Pt B):1242-4. doi: 10.1016/j.neuroimage.2015.04.016. Epub 2015 Apr 11.

26.

Making big data open: data sharing in neuroimaging.

Poldrack RA, Gorgolewski KJ.

Nat Neurosci. 2014 Nov;17(11):1510-7. doi: 10.1038/nn.3818. Epub 2014 Oct 28. Review.

PMID:
25349916
27.

Dynamic network participation of functional connectivity hubs assessed by resting-state fMRI.

Schaefer A, Margulies DS, Lohmann G, Gorgolewski KJ, Smallwood J, Kiebel SJ, Villringer A.

Front Hum Neurosci. 2014 May 6;8:195. doi: 10.3389/fnhum.2014.00195. eCollection 2014.

28.

A correspondence between individual differences in the brain's intrinsic functional architecture and the content and form of self-generated thoughts.

Gorgolewski KJ, Lurie D, Urchs S, Kipping JA, Craddock RC, Milham MP, Margulies DS, Smallwood J.

PLoS One. 2014 May 13;9(5):e97176. doi: 10.1371/journal.pone.0097176. eCollection 2014.

29.

An open science resource for establishing reliability and reproducibility in functional connectomics.

Zuo XN, Anderson JS, Bellec P, Birn RM, Biswal BB, Blautzik J, Breitner JC, Buckner RL, Calhoun VD, Castellanos FX, Chen A, Chen B, Chen J, Chen X, Colcombe SJ, Courtney W, Craddock RC, Di Martino A, Dong HM, Fu X, Gong Q, Gorgolewski KJ, Han Y, He Y, He Y, Ho E, Holmes A, Hou XH, Huckins J, Jiang T, Jiang Y, Kelley W, Kelly C, King M, LaConte SM, Lainhart JE, Lei X, Li HJ, Li K, Li K, Lin Q, Liu D, Liu J, Liu X, Liu Y, Lu G, Lu J, Luna B, Luo J, Lurie D, Mao Y, Margulies DS, Mayer AR, Meindl T, Meyerand ME, Nan W, Nielsen JA, O'Connor D, Paulsen D, Prabhakaran V, Qi Z, Qiu J, Shao C, Shehzad Z, Tang W, Villringer A, Wang H, Wang K, Wei D, Wei GX, Weng XC, Wu X, Xu T, Yang N, Yang Z, Zang YF, Zhang L, Zhang Q, Zhang Z, Zhang Z, Zhao K, Zhen Z, Zhou Y, Zhu XT, Milham MP.

Sci Data. 2014 Dec 9;1:140049. doi: 10.1038/sdata.2014.49. eCollection 2014.

30.

The default modes of reading: modulation of posterior cingulate and medial prefrontal cortex connectivity associated with comprehension and task focus while reading.

Smallwood J, Gorgolewski KJ, Golchert J, Ruby FJ, Engen H, Baird B, Vinski MT, Schooler JW, Margulies DS.

Front Hum Neurosci. 2013 Nov 12;7:734. doi: 10.3389/fnhum.2013.00734. eCollection 2013.

31.

Medial and lateral networks in anterior prefrontal cortex support metacognitive ability for memory and perception.

Baird B, Smallwood J, Gorgolewski KJ, Margulies DS.

J Neurosci. 2013 Oct 16;33(42):16657-65. doi: 10.1523/JNEUROSCI.0786-13.2013.

32.

Test-retest reliability of structural brain networks from diffusion MRI.

Buchanan CR, Pernet CR, Gorgolewski KJ, Storkey AJ, Bastin ME.

Neuroimage. 2014 Feb 1;86:231-43. doi: 10.1016/j.neuroimage.2013.09.054. Epub 2013 Oct 2.

PMID:
24096127
33.

Visualizing the human connectome.

Margulies DS, Böttger J, Watanabe A, Gorgolewski KJ.

Neuroimage. 2013 Oct 15;80:445-61. doi: 10.1016/j.neuroimage.2013.04.111. Epub 2013 May 6. Review.

34.

A test-retest fMRI dataset for motor, language and spatial attention functions.

Gorgolewski KJ, Storkey A, Bastin ME, Whittle IR, Wardlaw JM, Pernet CR.

Gigascience. 2013 Apr 29;2(1):6. doi: 10.1186/2047-217X-2-6.

35.

Making data sharing count: a publication-based solution.

Gorgolewski KJ, Margulies DS, Milham MP.

Front Neurosci. 2013 Feb 6;7:9. doi: 10.3389/fnins.2013.00009. eCollection 2013.

36.

Single subject fMRI test-retest reliability metrics and confounding factors.

Gorgolewski KJ, Storkey AJ, Bastin ME, Whittle I, Pernet C.

Neuroimage. 2013 Apr 1;69:231-43. doi: 10.1016/j.neuroimage.2012.10.085. Epub 2012 Nov 13.

PMID:
23153967
37.

Adaptive thresholding for reliable topological inference in single subject fMRI analysis.

Gorgolewski KJ, Storkey AJ, Bastin ME, Pernet CR.

Front Hum Neurosci. 2012 Aug 25;6:245. doi: 10.3389/fnhum.2012.00245. eCollection 2012.

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