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Science-graphic art partnerships to increase research impact.

Khoury CK, Kisel Y, Kantar M, Barber E, Ricciardi V, Klirs C, Kucera L, Mehrabi Z, Johnson N, Klabin S, Valiño Á, Nowakowski K, Bartomeus I, Ramankutty N, Miller A, Schipanski M, Gore MA, Novy A.

Commun Biol. 2019 Aug 6;2(1):295. doi: 10.1038/s42003-019-0516-1. No abstract available.


Millimeter-Level Plant Disease Detection From Aerial Photographs via Deep Learning and Crowdsourced Data.

Wiesner-Hanks T, Wu H, Stewart E, DeChant C, Kaczmar N, Lipson H, Gore MA, Nelson RJ.

Front Plant Sci. 2019 Dec 12;10:1550. doi: 10.3389/fpls.2019.01550. eCollection 2019.


Novel Bayesian Networks for Genomic Prediction of Developmental Traits in Biomass Sorghum.

Dos Santos JPR, Fernandes SB, Lozano R, Brown PJ, Buckler ES, Garcia AAF, Gore MA.

G3 (Bethesda). 2019 Dec 18. pii: g3.400759.2019. doi: 10.1534/g3.119.400759. [Epub ahead of print]


Genetic Analysis of the Transition from Wild to Domesticated Cotton (G. hirsutum L.).

Grover CE, Yoo MJ, Lin M, Murphy MD, Harker DB, Byers RL, Lipka AE, Hu G, Yuan D, Conover JL, Udall JA, Paterson AH, Gore MA, Wendel JF.

G3 (Bethesda). 2019 Dec 16. pii: g3.400909.2019. doi: 10.1534/g3.119.400909. [Epub ahead of print]


Heritable temporal gene expression patterns correlate with metabolomic seed content in developing hexaploid oat seed.

Hu H, Gutierrez-Gonzalez JJ, Liu X, Yeats TH, Garvin DF, Hoekenga OA, Sorrells ME, Gore MA, Jannink JL.

Plant Biotechnol J. 2019 Nov 1. doi: 10.1111/pbi.13286. [Epub ahead of print]


Machine Learning Enables High-Throughput Phenotyping for Analyses of the Genetic Architecture of Bulliform Cell Patterning in Maize.

Qiao P, Lin M, Vasquez M, Matschi S, Chamness J, Baseggio M, Smith LG, Sabuncu MR, Gore MA, Scanlon MJ.

G3 (Bethesda). 2019 Dec 3;9(12):4235-4243. doi: 10.1534/g3.119.400757.


Science-graphic art partnerships to increase research impact.

Khoury CK, Kisel Y, Kantar M, Barber E, Ricciardi V, Klirs C, Kucera L, Mehrabi Z, Johnson N, Klabin S, Valiño Á, Nowakowski K, Bartomeus I, Ramankutty N, Miller A, Schipanski M, Gore MA, Novy A.

Commun Biol. 2019 Aug 6;2:295. doi: 10.1038/s42003-019-0516-1. eCollection 2019.


Transcriptome-Wide Association Supplements Genome-Wide Association in Zea mays.

Kremling KAG, Diepenbrock CH, Gore MA, Buckler ES, Bandillo NB.

G3 (Bethesda). 2019 Sep 4;9(9):3023-3033. doi: 10.1534/g3.119.400549.


Multivariate Genome-Wide Association Analyses Reveal the Genetic Basis of Seed Fatty Acid Composition in Oat (Avena sativa L.).

Carlson MO, Montilla-Bascon G, Hoekenga OA, Tinker NA, Poland J, Baseggio M, Sorrells ME, Jannink JL, Gore MA, Yeats TH.

G3 (Bethesda). 2019 Sep 4;9(9):2963-2975. doi: 10.1534/g3.119.400228.


Genotypic evaluation of twenty-eight high- and low-cyanide cassava in low-land tropics, southeast Nigeria.

Mbah EU, Nwankwo BC, Njoku DN, Gore MA.

Heliyon. 2019 Jun 1;5(6):e01855. doi: 10.1016/j.heliyon.2019.e01855. eCollection 2019 Jun. Review.


Genome-Wide Association Study and Pathway-Level Analysis of Kernel Color in Maize.

Owens BF, Mathew D, Diepenbrock CH, Tiede T, Wu D, Mateos-Hernandez M, Gore MA, Rocheford T.

G3 (Bethesda). 2019 Jun 5;9(6):1945-1955. doi: 10.1534/g3.119.400040.


Genome-Wide Association and Genomic Prediction Models of Tocochromanols in Fresh Sweet Corn Kernels.

Baseggio M, Murray M, Magallanes-Lundback M, Kaczmar N, Chamness J, Buckler ES, Smith ME, DellaPenna D, Tracy WF, Gore MA.

Plant Genome. 2019 Mar;12(1). doi: 10.3835/plantgenome2018.06.0038.


Hyperspectral Reflectance-Derived Relationship Matrices for Genomic Prediction of Grain Yield in Wheat.

Krause MR, González-Pérez L, Crossa J, Pérez-Rodríguez P, Montesinos-López O, Singh RP, Dreisigacker S, Poland J, Rutkoski J, Sorrells M, Gore MA, Mondal S.

G3 (Bethesda). 2019 Apr 9;9(4):1231-1247. doi: 10.1534/g3.118.200856.


Deleterious Mutation Burden and Its Association with Complex Traits in Sorghum (Sorghum bicolor).

Valluru R, Gazave EE, Fernandes SB, Ferguson JN, Lozano R, Hirannaiah P, Zuo T, Brown PJ, Leakey ADB, Gore MA, Buckler ES, Bandillo N.

Genetics. 2019 Mar;211(3):1075-1087. doi: 10.1534/genetics.118.301742. Epub 2019 Jan 8.


Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets.

AlKhalifah N, Campbell DA, Falcon CM, Gardiner JM, Miller ND, Romay MC, Walls R, Walton R, Yeh CT, Bohn M, Bubert J, Buckler ES, Ciampitti I, Flint-Garcia S, Gore MA, Graham C, Hirsch C, Holland JB, Hooker D, Kaeppler S, Knoll J, Lauter N, Lee EC, Lorenz A, Lynch JP, Moose SP, Murray SC, Nelson R, Rocheford T, Rodriguez O, Schnable JC, Scully B, Smith M, Springer N, Thomison P, Tuinstra M, Wisser RJ, Xu W, Ertl D, Schnable PS, De Leon N, Spalding EP, Edwards J, Lawrence-Dill CJ.

BMC Res Notes. 2018 Jul 9;11(1):452. doi: 10.1186/s13104-018-3508-1.


Image set for deep learning: field images of maize annotated with disease symptoms.

Wiesner-Hanks T, Stewart EL, Kaczmar N, DeChant C, Wu H, Nelson RJ, Lipson H, Gore MA.

BMC Res Notes. 2018 Jul 3;11(1):440. doi: 10.1186/s13104-018-3548-6.


Multivariate Analysis of the Cotton Seed Ionome Reveals a Shared Genetic Architecture.

Pauli D, Ziegler G, Ren M, Jenks MA, Hunsaker DJ, Zhang M, Baxter I, Gore MA.

G3 (Bethesda). 2018 Mar 28;8(4):1147-1160. doi: 10.1534/g3.117.300479.


The yield difference between wild-type cotton and transgenic cotton that expresses IPT depends on when water-deficit stress is applied.

Zhu X, Sun L, Kuppu S, Hu R, Mishra N, Smith J, Esmaeili N, Herath M, Gore MA, Payton P, Shen G, Zhang H.

Sci Rep. 2018 Feb 7;8(1):2538. doi: 10.1038/s41598-018-20944-7.


Novel Loci Underlie Natural Variation in Vitamin E Levels in Maize Grain.

Diepenbrock CH, Kandianis CB, Lipka AE, Magallanes-Lundback M, Vaillancourt B, Góngora-Castillo E, Wallace JG, Cepela J, Mesberg A, Bradbury PJ, Ilut DC, Mateos-Hernandez M, Hamilton J, Owens BF, Tiede T, Buckler ES, Rocheford T, Buell CR, Gore MA, DellaPenna D.

Plant Cell. 2017 Oct;29(10):2374-2392. doi: 10.1105/tpc.17.00475. Epub 2017 Oct 2.


Investigation of the Influence of Leaf Thickness on Canopy Reflectance and Physiological Traits in Upland and Pima Cotton Populations.

Pauli D, White JW, Andrade-Sanchez P, Conley MM, Heun J, Thorp KR, French AN, Hunsaker DJ, Carmo-Silva E, Wang G, Gore MA.

Front Plant Sci. 2017 Aug 17;8:1405. doi: 10.3389/fpls.2017.01405. eCollection 2017.


Multispecialty consensus statement for primary care management of diabetic foot disease in India.

Bal A, Chaudhari C, Langer V, Vyas D, Thulasikumar G, Ruke M, Gore MA, Ramakrishna P, Khazanchi RK, Subrammaniyan SR, Sabapathy SR, Desai S, Vaidya S, Vijayasimha S, Jain S, Chaudhary S, Kari S, Rege T.

Natl Med J India. 2017 Mar-Apr;30(2):82-88. No abstract available.


Automated Identification of Northern Leaf Blight-Infected Maize Plants from Field Imagery Using Deep Learning.

DeChant C, Wiesner-Hanks T, Chen S, Stewart EL, Yosinski J, Gore MA, Nelson RJ, Lipson H.

Phytopathology. 2017 Nov;107(11):1426-1432. doi: 10.1094/PHYTO-11-16-0417-R. Epub 2017 Aug 24.


NLR locus-mediated trade-off between abiotic and biotic stress adaptation in Arabidopsis.

Ariga H, Katori T, Tsuchimatsu T, Hirase T, Tajima Y, Parker JE, Alcázar R, Koornneef M, Hoekenga O, Lipka AE, Gore MA, Sakakibara H, Kojima M, Kobayashi Y, Iuchi S, Kobayashi M, Shinozaki K, Sakata Y, Hayashi T, Saijo Y, Taji T.

Nat Plants. 2017 May 26;3:17072. doi: 10.1038/nplants.2017.72.


A community resource for exploring and utilizing genetic diversity in the USDA pea single plant plus collection.

Holdsworth WL, Gazave E, Cheng P, Myers JR, Gore MA, Coyne CJ, McGee RJ, Mazourek M.

Hortic Res. 2017 Apr 26;4:17017. doi: 10.1038/hortres.2017.17. eCollection 2017.


Temporal Genetic Dynamics of an Experimental, Biparental Field Population of Phytophthora capsici.

Carlson MO, Gazave E, Gore MA, Smart CD.

Front Genet. 2017 Mar 13;8:26. doi: 10.3389/fgene.2017.00026. eCollection 2017.


Population Structure and Phylogenetic Relationships in a Diverse Panel of Brassica rapa L.

Bird KA, An H, Gazave E, Gore MA, Pires JC, Robertson LD, Labate JA.

Front Plant Sci. 2017 Mar 13;8:321. doi: 10.3389/fpls.2017.00321. eCollection 2017.


Network-Guided GWAS Improves Identification of Genes Affecting Free Amino Acids.

Angelovici R, Batushansky A, Deason N, Gonzalez-Jorge S, Gore MA, Fait A, DellaPenna D.

Plant Physiol. 2017 Jan;173(1):872-886. doi: 10.1104/pp.16.01287. Epub 2016 Nov 21.


The Quest for Understanding Phenotypic Variation via Integrated Approaches in the Field Environment.

Pauli D, Chapman SC, Bart R, Topp CN, Lawrence-Dill CJ, Poland J, Gore MA.

Plant Physiol. 2016 Oct;172(2):622-634. Epub 2016 Aug 1. Review. No abstract available.


ZEAXANTHIN EPOXIDASE Activity Potentiates Carotenoid Degradation in Maturing Seed.

Gonzalez-Jorge S, Mehrshahi P, Magallanes-Lundback M, Lipka AE, Angelovici R, Gore MA, DellaPenna D.

Plant Physiol. 2016 Jul;171(3):1837-51. doi: 10.1104/pp.16.00604. Epub 2016 May 6.


Population Genomic Analysis Reveals Differential Evolutionary Histories and Patterns of Diversity across Subgenomes and Subpopulations of Brassica napus L.

Gazave E, Tassone EE, Ilut DC, Wingerson M, Datema E, Witsenboer HM, Davis JB, Grant D, Dyer JM, Jenks MA, Brown J, Gore MA.

Front Plant Sci. 2016 Apr 21;7:525. doi: 10.3389/fpls.2016.00525. eCollection 2016.


Use of Photo-Identification and Mark-Recapture Methodology to Assess Basking Shark (Cetorhinus maximus) Populations.

Gore MA, Frey PH, Ormond RF, Allan H, Gilkes G.

PLoS One. 2016 Mar 1;11(3):e0150160. doi: 10.1371/journal.pone.0150160. eCollection 2016.


Field-Based High-Throughput Plant Phenotyping Reveals the Temporal Patterns of Quantitative Trait Loci Associated with Stress-Responsive Traits in Cotton.

Pauli D, Andrade-Sanchez P, Carmo-Silva AE, Gazave E, French AN, Heun J, Hunsaker DJ, Lipka AE, Setter TL, Strand RJ, Thorp KR, Wang S, White JW, Gore MA.

G3 (Bethesda). 2016 Apr 7;6(4):865-79. doi: 10.1534/g3.115.023515.


Genetic Diversity of the Two Commercial Tetraploid Cotton Species in the Gossypium Diversity Reference Set.

Hinze LL, Gazave E, Gore MA, Fang DD, Scheffler BE, Yu JZ, Jones DC, Frelichowski J, Percy RG.

J Hered. 2016 May;107(3):274-86. doi: 10.1093/jhered/esw004. Epub 2016 Jan 16. Erratum in: J Hered. 2016 Sep;107(5):478.


Identification of haplotypes at the Rsv4 genomic region in soybean associated with durable resistance to soybean mosaic virus.

Ilut DC, Lipka AE, Jeong N, Bae DN, Kim DH, Kim JH, Redekar N, Yang K, Park W, Kang ST, Kim N, Moon JK, Saghai Maroof MA, Gore MA, Jeong SC.

Theor Appl Genet. 2016 Mar;129(3):453-68. doi: 10.1007/s00122-015-2640-8. Epub 2015 Dec 9.


Re-evaluating the phylogeny of allopolyploid Gossypium L.

Grover CE, Gallagher JP, Jareczek JJ, Page JT, Udall JA, Gore MA, Wendel JF.

Mol Phylogenet Evol. 2015 Nov;92:45-52. doi: 10.1016/j.ympev.2015.05.023. Epub 2015 Jun 4.


Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.

Hulse-Kemp AM, Lemm J, Plieske J, Ashrafi H, Buyyarapu R, Fang DD, Frelichowski J, Giband M, Hague S, Hinze LL, Kochan KJ, Riggs PK, Scheffler JA, Udall JA, Ulloa M, Wang SS, Zhu QH, Bag SK, Bhardwaj A, Burke JJ, Byers RL, Claverie M, Gore MA, Harker DB, Islam MS, Jenkins JN, Jones DC, Lacape JM, Llewellyn DJ, Percy RG, Pepper AE, Poland JA, Mohan Rai K, Sawant SV, Singh SK, Spriggs A, Taylor JM, Wang F, Yourstone SM, Zheng X, Lawley CT, Ganal MW, Van Deynze A, Wilson IW, Stelly DM.

G3 (Bethesda). 2015 Apr 22;5(6):1187-209. doi: 10.1534/g3.115.018416.


From association to prediction: statistical methods for the dissection and selection of complex traits in plants.

Lipka AE, Kandianis CB, Hudson ME, Yu J, Drnevich J, Bradbury PJ, Gore MA.

Curr Opin Plant Biol. 2015 Apr;24:110-8. doi: 10.1016/j.pbi.2015.02.010. Epub 2015 Mar 17. Review.


Molecular characterization of the Gossypium Diversity Reference Set of the US National Cotton Germplasm Collection.

Hinze LL, Fang DD, Gore MA, Scheffler BE, Yu JZ, Frelichowski J, Percy RG.

Theor Appl Genet. 2015 Feb;128(2):313-27. doi: 10.1007/s00122-014-2431-7. Epub 2014 Nov 28.


Genome-wide analysis of the omega-3 fatty acid desaturase gene family in Gossypium.

Yurchenko OP, Park S, Ilut DC, Inmon JJ, Millhollon JC, Liechty Z, Page JT, Jenks MA, Chapman KD, Udall JA, Gore MA, Dyer JM.

BMC Plant Biol. 2014 Nov 18;14:312. doi: 10.1186/s12870-014-0312-5.


A foundation for provitamin A biofortification of maize: genome-wide association and genomic prediction models of carotenoid levels.

Owens BF, Lipka AE, Magallanes-Lundback M, Tiede T, Diepenbrock CH, Kandianis CB, Kim E, Cepela J, Mateos-Hernandez M, Buell CR, Buckler ES, DellaPenna D, Gore MA, Rocheford T.

Genetics. 2014 Dec;198(4):1699-716. doi: 10.1534/genetics.114.169979. Epub 2014 Sep 25.


Multiple extra macular branch retinal vein occlusions in hyperhomocysteinemia.

Gore AD, Rao GS, Gore MA, Desai AR.

Indian J Ophthalmol. 2014 Apr;62(4):489-91. doi: 10.4103/0301-4738.132110.


The genetic architecture of maize height.

Peiffer JA, Romay MC, Gore MA, Flint-Garcia SA, Zhang Z, Millard MJ, Gardner CA, McMullen MD, Holland JB, Bradbury PJ, Buckler ES.

Genetics. 2014 Apr;196(4):1337-56. doi: 10.1534/genetics.113.159152. Epub 2014 Feb 10.


Carotenoid cleavage dioxygenase4 is a negative regulator of β-carotene content in Arabidopsis seeds.

Gonzalez-Jorge S, Ha SH, Magallanes-Lundback M, Gilliland LU, Zhou A, Lipka AE, Nguyen YN, Angelovici R, Lin H, Cepela J, Little H, Buell CR, Gore MA, Dellapenna D.

Plant Cell. 2013 Dec;25(12):4812-26. doi: 10.1105/tpc.113.119677. Epub 2013 Dec 24.


Genome-wide analysis of branched-chain amino acid levels in Arabidopsis seeds.

Angelovici R, Lipka AE, Deason N, Gonzalez-Jorge S, Lin H, Cepela J, Buell R, Gore MA, Dellapenna D.

Plant Cell. 2013 Dec;25(12):4827-43. doi: 10.1105/tpc.113.119370. Epub 2013 Dec 24.


Genetic diversity and population structure in the US Upland cotton (Gossypium hirsutum L.).

Tyagi P, Gore MA, Bowman DT, Campbell BT, Udall JA, Kuraparthy V.

Theor Appl Genet. 2014 Feb;127(2):283-95. doi: 10.1007/s00122-013-2217-3. Epub 2013 Oct 30.


Genome-wide association study and pathway-level analysis of tocochromanol levels in maize grain.

Lipka AE, Gore MA, Magallanes-Lundback M, Mesberg A, Lin H, Tiede T, Chen C, Buell CR, Buckler ES, Rocheford T, DellaPenna D.

G3 (Bethesda). 2013 Aug 7;3(8):1287-99. doi: 10.1534/g3.113.006148. Erratum in: G3 (Bethesda). 2014 Dec;4(12):2553.


Excision of carbuncle with primary split-thickness skin grafting as a new treatment modality.

Iyer SP, Kadam P, Gore MA, Subramaniyan P.

Int Wound J. 2013 Dec;10(6):697-702. doi: 10.1111/j.1742-481X.2012.01049.x. Epub 2012 Aug 10.


GAPIT: genome association and prediction integrated tool.

Lipka AE, Tian F, Wang Q, Peiffer J, Li M, Bradbury PJ, Gore MA, Buckler ES, Zhang Z.

Bioinformatics. 2012 Sep 15;28(18):2397-9. Epub 2012 Jul 13.


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