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Items: 1 to 50 of 124

1.

Direct detection of Mycobacterium tuberculosis in clinical samples by a dry methyl green loop-mediated isothermal amplification (LAMP) method.

Thapa J, Maharjan B, Malla M, Fukushima Y, Poudel A, Pandey BD, Hyashida K, Gordon SV, Nakajima C, Suzuki Y.

Tuberculosis (Edinb). 2019 Jul;117:1-6. doi: 10.1016/j.tube.2019.05.004. Epub 2019 May 21.

PMID:
31378262
2.

Erratum to "Insight into multidrug-resistant Beijing genotype Mycobacterium tuberculosis isolates in Myanmar" [Int. J. Infect. Dis. 76 (November) (2018) 109-119].

San LL, Aye KS, Nan Aye TO, Shwe MM, Fukushima Y, Gordon SV, Suzuki Y, Nakajima C.

Int J Infect Dis. 2019 Aug;85:214. doi: 10.1016/j.ijid.2019.07.013. No abstract available.

3.

Insight into genetic diversity of Mycobacterium tuberculosis in Kandy, Sri Lanka reveals predominance of the Euro-American lineage.

Mendis C, Thevanesam V, Kumara A, Wickramasinghe S, Madegedara D, Gamage C, Gordon SV, Suzuki Y, Ratnatunga C, Nakajima C.

Int J Infect Dis. 2019 Oct;87:84-91. doi: 10.1016/j.ijid.2019.07.001. Epub 2019 Jul 9.

4.

The bovine alveolar macrophage DNA methylome is resilient to infection with Mycobacterium bovis.

O'Doherty AM, Rue-Albrecht KC, Magee DA, Ahting S, Irwin RE, Hall TJ, Browne JA, Nalpas NC, Walsh CP, Gordon SV, Wojewodzic MW, MacHugh DE.

Sci Rep. 2019 Feb 6;9(1):1510. doi: 10.1038/s41598-018-37618-z.

5.

HomoplasyFinder: a simple tool to identify homoplasies on a phylogeny.

Crispell J, Balaz D, Gordon SV.

Microb Genom. 2019 Jan;5(1). doi: 10.1099/mgen.0.000245. Epub 2019 Jan 21.

6.

Genetic diversity and distribution dynamics of multidrug-resistant Mycobacterium tuberculosis isolates in Nepal.

Maharjan B, Nakajima C, Isoda N, Thapa J, Poudel A, Shah Y, Yamaguchi T, Shrestha B, Hoffmann H, Avsar K, Shrestha A, Gordon SV, Suzuki Y.

Sci Rep. 2018 Nov 9;8(1):16634. doi: 10.1038/s41598-018-34306-w.

7.

A katG S315T or an ahpC promoter mutation mediate Mycobacterium tuberculosis resistance to 2-thiophen carboxylic acid hydrazide, an inhibitor resembling the anti-tubercular drugs Isoniazid and Ethionamide.

Franceschelli JJ, Belardinelli JM, Tong P, Loftus B, Recio-Balsells A, Labadié GR, Gordon SV, Morbidoni HR.

Tuberculosis (Edinb). 2018 Sep;112:69-78. doi: 10.1016/j.tube.2018.08.001. Epub 2018 Aug 3.

PMID:
30205971
8.

RNA Sequencing (RNA-Seq) Reveals Extremely Low Levels of Reticulocyte-Derived Globin Gene Transcripts in Peripheral Blood From Horses (Equus caballus) and Cattle (Bos taurus).

Correia CN, McLoughlin KE, Nalpas NC, Magee DA, Browne JA, Rue-Albrecht K, Gordon SV, MacHugh DE.

Front Genet. 2018 Aug 14;9:278. doi: 10.3389/fgene.2018.00278. eCollection 2018.

9.

Insight into multidrug-resistant Beijing genotype Mycobacterium tuberculosis isolates in Myanmar.

San LL, Aye KS, Oo NAT, Shwe MM, Fukushima Y, Gordon SV, Suzuki Y, Nakajima C.

Int J Infect Dis. 2018 Nov;76:109-119. doi: 10.1016/j.ijid.2018.06.009. Epub 2018 Jun 21. Erratum in: Int J Infect Dis. 2019 Aug;85:214.

10.

Comparative 'omics analyses differentiate Mycobacterium tuberculosis and Mycobacterium bovis and reveal distinct macrophage responses to infection with the human and bovine tubercle bacilli.

Malone KM, Rue-Albrecht K, Magee DA, Conlon K, Schubert OT, Nalpas NC, Browne JA, Smyth A, Gormley E, Aebersold R, MacHugh DE, Gordon SV.

Microb Genom. 2018 Mar;4(3). doi: 10.1099/mgen.0.000163. Epub 2018 Mar 20.

11.

Microbe Profile: Mycobacterium tuberculosis: Humanity's deadly microbial foe.

Gordon SV, Parish T.

Microbiology. 2018 Apr;164(4):437-439. doi: 10.1099/mic.0.000601. Epub 2018 Feb 21.

PMID:
29465344
12.

Experimental infection of cattle with Mycobacterium tuberculosis isolates shows the attenuation of the human tubercle bacillus for cattle.

Villarreal-Ramos B, Berg S, Whelan A, Holbert S, Carreras F, Salguero FJ, Khatri BL, Malone K, Rue-Albrecht K, Shaughnessy R, Smyth A, Ameni G, Aseffa A, Sarradin P, Winter N, Vordermeier M, Gordon SV.

Sci Rep. 2018 Jan 17;8(1):894. doi: 10.1038/s41598-017-18575-5.

13.

Mycobacterium tuberculosis Complex Members Adapted to Wild and Domestic Animals.

Malone KM, Gordon SV.

Adv Exp Med Biol. 2017;1019:135-154. doi: 10.1007/978-3-319-64371-7_7. Review.

PMID:
29116633
14.

Updated Reference Genome Sequence and Annotation of Mycobacterium bovis AF2122/97.

Malone KM, Farrell D, Stuber TP, Schubert OT, Aebersold R, Robbe-Austerman S, Gordon SV.

Genome Announc. 2017 Apr 6;5(14). pii: e00157-17. doi: 10.1128/genomeA.00157-17.

15.

Integrated computational prediction and experimental validation identifies promiscuous T cell epitopes in the proteome of Mycobacterium bovis.

Farrell D, Jones G, Pirson C, Malone K, Rue-Albrecht K, Chubb AJ, Vordermeier M, Gordon SV.

Microb Genom. 2016 Aug 25;2(8):e000071. doi: 10.1099/mgen.0.000071. eCollection 2016 Aug.

16.

Circulating microRNAs as Potential Biomarkers of Infectious Disease.

Correia CN, Nalpas NC, McLoughlin KE, Browne JA, Gordon SV, MacHugh DE, Shaughnessy RG.

Front Immunol. 2017 Feb 16;8:118. doi: 10.3389/fimmu.2017.00118. eCollection 2017. Review.

17.

Tuberculosis Caused by Mycobacterium orygis in Dairy Cattle and Captured Monkeys in Bangladesh: a New Scenario of Tuberculosis in South Asia.

Rahim Z, Thapa J, Fukushima Y, van der Zanden AGM, Gordon SV, Suzuki Y, Nakajima C.

Transbound Emerg Dis. 2017 Dec;64(6):1965-1969. doi: 10.1111/tbed.12596. Epub 2016 Nov 25.

PMID:
27888587
18.

Red squirrels in the British Isles are infected with leprosy bacilli.

Avanzi C, Del-Pozo J, Benjak A, Stevenson K, Simpson VR, Busso P, McLuckie J, Loiseau C, Lawton C, Schoening J, Shaw DJ, Piton J, Vera-Cabrera L, Velarde-Felix JS, McDermott F, Gordon SV, Cole ST, Meredith AL.

Science. 2016 Nov 11;354(6313):744-747.

PMID:
27846605
19.

Antibiotic Methylation: A New Mechanism of Antimicrobial Resistance.

Malone KM, Gordon SV.

Trends Microbiol. 2016 Oct;24(10):771-772. doi: 10.1016/j.tim.2016.08.003. Epub 2016 Sep 1.

PMID:
27593675
20.

Agricultural anaerobic digestion power plants in Ireland and Germany: policy and practice.

Auer A, Vande Burgt NH, Abram F, Barry G, Fenton O, Markey BK, Nolan S, Richards K, Bolton D, De Waal T, Gordon SV, O'Flaherty V, Whyte P, Zintl A.

J Sci Food Agric. 2017 Feb;97(3):719-723. doi: 10.1002/jsfa.8005. Epub 2016 Sep 28.

PMID:
27553887
21.

GOexpress: an R/Bioconductor package for the identification and visualisation of robust gene ontology signatures through supervised learning of gene expression data.

Rue-Albrecht K, McGettigan PA, Hernández B, Nalpas NC, Magee DA, Parnell AC, Gordon SV, MacHugh DE.

BMC Bioinformatics. 2016 Mar 11;17:126. doi: 10.1186/s12859-016-0971-3.

22.

A Common Variant in the Adaptor Mal Regulates Interferon Gamma Signaling.

Ní Cheallaigh C, Sheedy FJ, Harris J, Muñoz-Wolf N, Lee J, West K, McDermott EP, Smyth A, Gleeson LE, Coleman M, Martinez N, Hearnden CH, Tynan GA, Carroll EC, Jones SA, Corr SC, Bernard NJ, Hughes MM, Corcoran SE, O'Sullivan M, Fallon CM, Kornfeld H, Golenbock D, Gordon SV, O'Neill LA, Lavelle EC, Keane J.

Immunity. 2016 Feb 16;44(2):368-79. doi: 10.1016/j.immuni.2016.01.019.

23.

Potential application of emerging diagnostic techniques to the diagnosis of bovine Johne's disease (paratuberculosis).

Britton LE, Cassidy JP, O'Donovan J, Gordon SV, Markey B.

Vet J. 2016 Mar;209:32-9. doi: 10.1016/j.tvjl.2015.10.033. Epub 2015 Oct 22. Review.

PMID:
26831164
24.

70th Anniversary Collection for the Microbiology Society: Microbiology.

Gordon SV.

Microbiology. 2015 Dec;161(12):2265-2268. doi: 10.1099/mic.0.000188. No abstract available.

PMID:
26690817
25.

Analysis of Biobanked Serum from a Mycobacterium avium subsp paratuberculosis Bovine Infection Model Confirms the Remarkable Stability of Circulating miRNA Profiles and Defines a Bovine Serum miRNA Repertoire.

Shaughnessy RG, Farrell D, Riepema K, Bakker D, Gordon SV.

PLoS One. 2015 Dec 16;10(12):e0145089. doi: 10.1371/journal.pone.0145089. eCollection 2015. Erratum in: PLoS One. 2016;11(1):e0147355.

26.

The MarR family transcription factor Rv1404 coordinates adaptation of Mycobacterium tuberculosis to acid stress via controlled expression of Rv1405c, a virulence-associated methyltransferase.

Healy C, Golby P, MacHugh DE, Gordon SV.

Tuberculosis (Edinb). 2016 Mar;97:154-62. doi: 10.1016/j.tube.2015.10.003. Epub 2015 Nov 10.

PMID:
26615221
27.

RNA sequencing provides exquisite insight into the manipulation of the alveolar macrophage by tubercle bacilli.

Nalpas NC, Magee DA, Conlon KM, Browne JA, Healy C, McLoughlin KE, Rue-Albrecht K, McGettigan PA, Killick KE, Gormley E, Gordon SV, MacHugh DE.

Sci Rep. 2015 Sep 8;5:13629. doi: 10.1038/srep13629.

28.

The Identification of Circulating MiRNA in Bovine Serum and Their Potential as Novel Biomarkers of Early Mycobacterium avium subsp paratuberculosis Infection.

Farrell D, Shaughnessy RG, Britton L, MacHugh DE, Markey B, Gordon SV.

PLoS One. 2015 Jul 28;10(7):e0134310. doi: 10.1371/journal.pone.0134310. eCollection 2015.

29.

Epitopemap: a web application for integrated whole proteome epitope prediction.

Farrell D, Gordon SV.

BMC Bioinformatics. 2015 Jul 14;16:221. doi: 10.1186/s12859-015-0659-0.

30.

Investigation of the high rates of extrapulmonary tuberculosis in Ethiopia reveals no single driving factor and minimal evidence for zoonotic transmission of Mycobacterium bovis infection.

Berg S, Schelling E, Hailu E, Firdessa R, Gumi B, Erenso G, Gadisa E, Mengistu A, Habtamu M, Hussein J, Kiros T, Bekele S, Mekonnen W, Derese Y, Zinsstag J, Ameni G, Gagneux S, Robertson BD, Tschopp R, Hewinson G, Yamuah L, Gordon SV, Aseffa A.

BMC Infect Dis. 2015 Mar 3;15:112. doi: 10.1186/s12879-015-0846-7.

31.

MicroRNA profiling of the bovine alveolar macrophage response to Mycobacterium bovis infection suggests pathogen survival is enhanced by microRNA regulation of endocytosis and lysosome trafficking.

Vegh P, Magee DA, Nalpas NC, Bryan K, McCabe MS, Browne JA, Conlon KM, Gordon SV, Bradley DG, MacHugh DE, Lynn DJ.

Tuberculosis (Edinb). 2015 Jan;95(1):60-7.

32.

Why doesn't Mycobacterium tuberculosis spread in animals?

Behr MA, Gordon SV.

Trends Microbiol. 2015 Jan;23(1):1-2. doi: 10.1016/j.tim.2014.11.001. Epub 2014 Nov 26. No abstract available.

PMID:
25435136
33.

Comparative functional genomics and the bovine macrophage response to strains of the mycobacterium genus.

Rue-Albrecht K, Magee DA, Killick KE, Nalpas NC, Gordon SV, MacHugh DE.

Front Immunol. 2014 Nov 5;5:536. doi: 10.3389/fimmu.2014.00536. eCollection 2014. Review.

34.

Key Hub and Bottleneck Genes Differentiate the Macrophage Response to Virulent and Attenuated Mycobacterium bovis.

Killick KE, Magee DA, Park SD, Taraktsoglou M, Browne JA, Conlon KM, Nalpas NC, Gormley E, Gordon SV, MacHugh DE, Hokamp K.

Front Immunol. 2014 Oct 1;5:422. doi: 10.3389/fimmu.2014.00422. eCollection 2014.

35.

RNA-seq Transcriptional Profiling of Peripheral Blood Leukocytes from Cattle Infected with Mycobacterium bovis.

McLoughlin KE, Nalpas NC, Rue-Albrecht K, Browne JA, Magee DA, Killick KE, Park SD, Hokamp K, Meade KG, O'Farrelly C, Gormley E, Gordon SV, MacHugh DE.

Front Immunol. 2014 Aug 26;5:396. doi: 10.3389/fimmu.2014.00396. eCollection 2014.

36.

Relaxed selection drives a noisy noncoding transcriptome in members of the Mycobacterium tuberculosis complex.

Dinan AM, Tong P, Lohan AJ, Conlon KM, Miranda-CasoLuengo AA, Malone KM, Gordon SV, Loftus BJ.

MBio. 2014 Aug 5;5(4):e01169-14. doi: 10.1128/mBio.01169-14.

37.

Innate cytokine profiling of bovine alveolar macrophages reveals commonalities and divergence in the response to Mycobacterium bovis and Mycobacterium tuberculosis infection.

Magee DA, Conlon KM, Nalpas NC, Browne JA, Pirson C, Healy C, McLoughlin KE, Chen J, Vordermeier HM, Gormley E, MacHugh DE, Gordon SV.

Tuberculosis (Edinb). 2014 Jul;94(4):441-50. doi: 10.1016/j.tube.2014.04.004. Epub 2014 May 5.

PMID:
24882682
38.

Iron-regulated protein HupB of Mycobacterium tuberculosis positively regulates siderophore biosynthesis and is essential for growth in macrophages.

Pandey SD, Choudhury M, Yousuf S, Wheeler PR, Gordon SV, Ranjan A, Sritharan M.

J Bacteriol. 2014 May;196(10):1853-65. doi: 10.1128/JB.01483-13. Epub 2014 Mar 7.

39.

The synthesis and biological evaluation of mycobacterial p-hydroxybenzoic acid derivatives (p-HBADs).

Bourke J, Brereton CF, Gordon SV, Lavelle EC, Scanlan EM.

Org Biomol Chem. 2014 Feb 21;12(7):1114-23. doi: 10.1039/c3ob42277a.

PMID:
24424275
40.

Genome-level analyses of Mycobacterium bovis lineages reveal the role of SNPs and antisense transcription in differential gene expression.

Golby P, Nunez J, Witney A, Hinds J, Quail MA, Bentley S, Harris S, Smith N, Hewinson RG, Gordon SV.

BMC Genomics. 2013 Oct 17;14:710. doi: 10.1186/1471-2164-14-710.

41.

Profiling microRNA expression in bovine alveolar macrophages using RNA-seq.

Vegh P, Foroushani AB, Magee DA, McCabe MS, Browne JA, Nalpas NC, Conlon KM, Gordon SV, Bradley DG, MacHugh DE, Lynn DJ.

Vet Immunol Immunopathol. 2013 Oct 1;155(4):238-44. doi: 10.1016/j.vetimm.2013.08.004. Epub 2013 Aug 24.

PMID:
24021155
42.

Volunteer unrelated donor experience after administration of filgrastim and apheresis for the collection of haemopoietic stem cells: the Australian perspective.

Gordon SV, Nivison-Smith I, Szer J, Chapman JR.

Intern Med J. 2013 Nov;43(11):1183-90. doi: 10.1111/imj.12282.

PMID:
24007325
43.

Identification and characterization of the genetic changes responsible for the characteristic smooth-to-rough morphotype alterations of clinically persistent Mycobacterium abscessus.

Pawlik A, Garnier G, Orgeur M, Tong P, Lohan A, Le Chevalier F, Sapriel G, Roux AL, Conlon K, Honoré N, Dillies MA, Ma L, Bouchier C, Coppée JY, Gaillard JL, Gordon SV, Loftus B, Brosch R, Herrmann JL.

Mol Microbiol. 2013 Nov;90(3):612-29. doi: 10.1111/mmi.12387. Epub 2013 Sep 17.

44.

The phylogeny and population structure of Mycobacterium bovis in the British Isles.

Allen AR, Dale J, McCormick C, Mallon TR, Costello E, Gordon SV, Hewinson RG, Skuce RA, Smith NH.

Infect Genet Evol. 2013 Dec;20:8-15. doi: 10.1016/j.meegid.2013.08.003. Epub 2013 Aug 9.

PMID:
23933404
45.

Mycobacterial lineages causing pulmonary and extrapulmonary tuberculosis, Ethiopia.

Firdessa R, Berg S, Hailu E, Schelling E, Gumi B, Erenso G, Gadisa E, Kiros T, Habtamu M, Hussein J, Zinsstag J, Robertson BD, Ameni G, Lohan AJ, Loftus B, Comas I, Gagneux S, Tschopp R, Yamuah L, Hewinson G, Gordon SV, Young DB, Aseffa A.

Emerg Infect Dis. 2013 Mar;19(3):460-3. doi: 10.3201/eid1903.120256.

46.

Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro.

Nalpas NC, Park SD, Magee DA, Taraktsoglou M, Browne JA, Conlon KM, Rue-Albrecht K, Killick KE, Hokamp K, Lohan AJ, Loftus BJ, Gormley E, Gordon SV, MacHugh DE.

BMC Genomics. 2013 Apr 8;14:230. doi: 10.1186/1471-2164-14-230.

47.

Database resources for the tuberculosis community.

Lew JM, Mao C, Shukla M, Warren A, Will R, Kuznetsov D, Xenarios I, Robertson BD, Gordon SV, Schnappinger D, Cole ST, Sobral B.

Tuberculosis (Edinb). 2013 Jan;93(1):12-7. doi: 10.1016/j.tube.2012.11.003. Epub 2013 Jan 17. Review.

48.

High prevalence of bovine tuberculosis in dairy cattle in central ethiopia: implications for the dairy industry and public health.

Firdessa R, Tschopp R, Wubete A, Sombo M, Hailu E, Erenso G, Kiros T, Yamuah L, Vordermeier M, Hewinson RG, Young D, Gordon SV, Sahile M, Aseffa A, Berg S.

PLoS One. 2012;7(12):e52851. doi: 10.1371/journal.pone.0052851. Epub 2012 Dec 28.

49.

Tuberculosis 2012: biology, pathogenesis and intervention strategies; an update from the city of light.

Gouzy A, Nigou J, Gilleron M, Neyrolles O, Tailleux L, Gordon SV.

Res Microbiol. 2013 Apr;164(3):270-80. doi: 10.1016/j.resmic.2012.12.006. Epub 2012 Dec 20.

PMID:
23266372
50.

A point mutation in cycA partially contributes to the D-cycloserine resistance trait of Mycobacterium bovis BCG vaccine strains.

Chen JM, Uplekar S, Gordon SV, Cole ST.

PLoS One. 2012;7(8):e43467. doi: 10.1371/journal.pone.0043467. Epub 2012 Aug 17.

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