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Items: 1 to 50 of 62

1.

Small-angle neutron and X-ray scattering analysis of the supramolecular organization of rhodopsin in photoreceptor membrane.

Feldman TB, Ivankov OI, Kuklin AI, Murugova TN, Yakovleva MA, Smitienko OA, Kolchugina IB, Round A, Gordeliy VI, Belushkin AV, Ostrovsky MA.

Biochim Biophys Acta Biomembr. 2019 May 30. pii: S0005-2736(19)30119-1. doi: 10.1016/j.bbamem.2019.05.022. [Epub ahead of print]

PMID:
31152688
2.

A thermostable flavin-based fluorescent protein from Chloroflexus aggregans: a framework for ultra-high resolution structural studies.

Nazarenko VV, Remeeva A, Yudenko A, Kovalev K, Dubenko A, Goncharov IM, Kuzmichev P, Rogachev AV, Buslaev P, Borshchevskiy V, Mishin A, Dhoke GV, Schwaneberg U, Davari MD, Jaeger KE, Krauss U, Gordeliy V, Gushchin I.

Photochem Photobiol Sci. 2019 Jul 10;18(7):1793-1805. doi: 10.1039/c9pp00067d.

PMID:
31116222
3.

Structure and mechanisms of sodium-pumping KR2 rhodopsin.

Kovalev K, Polovinkin V, Gushchin I, Alekseev A, Shevchenko V, Borshchevskiy V, Astashkin R, Balandin T, Bratanov D, Vaganova S, Popov A, Chupin V, Büldt G, Bamberg E, Gordeliy V.

Sci Adv. 2019 Apr 10;5(4):eaav2671. doi: 10.1126/sciadv.aav2671. eCollection 2019 Apr.

4.

Aspergillus fumigatus Infection-Induced Neutrophil Recruitment and Location in the Conducting Airway of Immunocompetent, Neutropenic, and Immunosuppressed Mice.

Shevchenko MA, Bogorodskiy AO, Troyanova NI, Servuli EA, Bolkhovitina EL, Büldt G, Fahlke C, Gordeliy VI, Gensch T, Borshchevskiy VI, Sapozhnikov AM.

J Immunol Res. 2018 Jan 18;2018:5379085. doi: 10.1155/2018/5379085. eCollection 2018.

5.

Microbial Rhodopsins.

Gushchin I, Gordeliy V.

Subcell Biochem. 2018;87:19-56. doi: 10.1007/978-981-10-7757-9_2. Review.

PMID:
29464556
6.

Efficient non-cytotoxic fluorescent staining of halophiles.

Maslov I, Bogorodskiy A, Mishin A, Okhrimenko I, Gushchin I, Kalenov S, Dencher NA, Fahlke C, Büldt G, Gordeliy V, Gensch T, Borshchevskiy V.

Sci Rep. 2018 Feb 7;8(1):2549. doi: 10.1038/s41598-018-20839-7.

7.

Transmembrane Signal Transduction in Two-Component Systems: Piston, Scissoring, or Helical Rotation?

Gushchin I, Gordeliy V.

Bioessays. 2018 Feb;40(2). doi: 10.1002/bies.201700197. Epub 2017 Dec 27. Review.

PMID:
29280502
8.

Structural insights into ion conduction by channelrhodopsin 2.

Volkov O, Kovalev K, Polovinkin V, Borshchevskiy V, Bamann C, Astashkin R, Marin E, Popov A, Balandin T, Willbold D, Büldt G, Bamberg E, Gordeliy V.

Science. 2017 Nov 24;358(6366). pii: eaan8862. doi: 10.1126/science.aan8862.

PMID:
29170206
9.

Inward H+ pump xenorhodopsin: Mechanism and alternative optogenetic approach.

Shevchenko V, Mager T, Kovalev K, Polovinkin V, Alekseev A, Juettner J, Chizhov I, Bamann C, Vavourakis C, Ghai R, Gushchin I, Borshchevskiy V, Rogachev A, Melnikov I, Popov A, Balandin T, Rodriguez-Valera F, Manstein DJ, Bueldt G, Bamberg E, Gordeliy V.

Sci Adv. 2017 Sep 22;3(9):e1603187. doi: 10.1126/sciadv.1603187. eCollection 2017 Sep.

10.

Mechanism of transmembrane signaling by sensor histidine kinases.

Gushchin I, Melnikov I, Polovinkin V, Ishchenko A, Yuzhakova A, Buslaev P, Bourenkov G, Grudinin S, Round E, Balandin T, Borshchevskiy V, Willbold D, Leonard G, Büldt G, Popov A, Gordeliy V.

Science. 2017 Jun 9;356(6342). pii: eaah6345. doi: 10.1126/science.aah6345. Epub 2017 May 18.

PMID:
28522691
11.

Fast iodide-SAD phasing for high-throughput membrane protein structure determination.

Melnikov I, Polovinkin V, Kovalev K, Gushchin I, Shevtsov M, Shevchenko V, Mishin A, Alekseev A, Rodriguez-Valera F, Borshchevskiy V, Cherezov V, Leonard GA, Gordeliy V, Popov A.

Sci Adv. 2017 May 12;3(5):e1602952. doi: 10.1126/sciadv.1602952. eCollection 2017 May.

12.

Erratum to: High-Resolution Structure of a Membrane Protein Transferred from Amphipol to a Lipidic Mesophase.

Polovinkin V, Gushchin I, Sintsov M, Round E, Balandin T, Chervakov P, Shevchenko V, Utrobin P, Popov A, Borshchevskiy V, Mishin A, Kuklin A, Willbold D, Chupin V, Popot JL, Gordeliy V.

J Membr Biol. 2017 Apr;250(2):237. doi: 10.1007/s00232-017-9949-y. No abstract available.

PMID:
28229180
13.

New Insights on Signal Propagation by Sensory Rhodopsin II/Transducer Complex.

Ishchenko A, Round E, Borshchevskiy V, Grudinin S, Gushchin I, Klare JP, Remeeva A, Polovinkin V, Utrobin P, Balandin T, Engelhard M, Büldt G, Gordeliy V.

Sci Rep. 2017 Feb 6;7:41811. doi: 10.1038/srep41811.

14.

Highly Sensitive Coherent Anti-Stokes Raman Scattering Imaging of Protein Crystals.

Arzumanyan GM, Doroshkevich NV, Mamatkulov KZ, Shashkov SN, Zinovev EV, Vlasov AV, Round ES, Gordeliy VI.

J Am Chem Soc. 2016 Oct 19;138(41):13457-13460. doi: 10.1021/jacs.6b04464. Epub 2016 Oct 10.

PMID:
27636908
15.

Expression and purification of an engineered human endothelin receptor B in a monomeric form.

Mishin AV, Luginina AP, Potapenko AP, Borshchevskiy VI, Katritch V, Edelweiss E, Okhrimenko IS, Gordeliy VI, Cherezov VG.

Dokl Biochem Biophys. 2016 Mar;467(1):157-61. doi: 10.1134/S1607672916020216. Epub 2016 May 20.

PMID:
27193723
16.

Principal Component Analysis of Lipid Molecule Conformational Changes in Molecular Dynamics Simulations.

Buslaev P, Gordeliy V, Grudinin S, Gushchin I.

J Chem Theory Comput. 2016 Mar 8;12(3):1019-28. doi: 10.1021/acs.jctc.5b01106. Epub 2016 Feb 4.

PMID:
26765212
17.

Study of visual pigment rhodopsin supramolecular organization in photoreceptor membrane by small-angle neutron scattering method with contrast variation.

Feldman TB, Ivankov OI, Murugova TN, Kuklin AI, Shelyakin PV, Yakovleva MA, Gordeliy VI, Belushkin AV, Ostrovsky MA.

Dokl Biochem Biophys. 2015;465:420-3. doi: 10.1134/S1607672915060186. Epub 2016 Jan 5.

PMID:
26728739
18.

Structure of the light-driven sodium pump KR2 and its implications for optogenetics.

Gushchin I, Shevchenko V, Polovinkin V, Borshchevskiy V, Buslaev P, Bamberg E, Gordeliy V.

FEBS J. 2016 Apr;283(7):1232-8. doi: 10.1111/febs.13585. Epub 2015 Nov 26.

19.

ESR - a retinal protein with unusual properties from Exiguobacterium sibiricum.

Petrovskaya LE, Balashov SP, Lukashev EP, Imasheva ES, Gushchin IY, Dioumaev AK, Rubin AB, Dolgikh DA, Gordeliy VI, Lanyi JK, Kirpichnikov MP.

Biochemistry (Mosc). 2015 Jun;80(6):688-700. doi: 10.1134/S000629791506005X. Review.

20.

MeshAndCollect: an automated multi-crystal data-collection workflow for synchrotron macromolecular crystallography beamlines.

Zander U, Bourenkov G, Popov AN, de Sanctis D, Svensson O, McCarthy AA, Round E, Gordeliy V, Mueller-Dieckmann C, Leonard GA.

Acta Crystallogr D Biol Crystallogr. 2015 Nov;71(Pt 11):2328-43. doi: 10.1107/S1399004715017927. Epub 2015 Oct 31.

21.

An Approach to Heterologous Expression of Membrane Proteins. The Case of Bacteriorhodopsin.

Bratanov D, Balandin T, Round E, Shevchenko V, Gushchin I, Polovinkin V, Borshchevskiy V, Gordeliy V.

PLoS One. 2015 Jun 5;10(6):e0128390. doi: 10.1371/journal.pone.0128390. eCollection 2015.

22.

Amyloid β Oligomeric Species Present in the Lag Phase of Amyloid Formation.

Wolff M, Unuchek D, Zhang B, Gordeliy V, Willbold D, Nagel-Steger L.

PLoS One. 2015 May 29;10(5):e0127865. doi: 10.1371/journal.pone.0127865. eCollection 2015.

23.

Crystal structure of a light-driven sodium pump.

Gushchin I, Shevchenko V, Polovinkin V, Kovalev K, Alekseev A, Round E, Borshchevskiy V, Balandin T, Popov A, Gensch T, Fahlke C, Bamann C, Willbold D, Büldt G, Bamberg E, Gordeliy V.

Nat Struct Mol Biol. 2015 May;22(5):390-5. doi: 10.1038/nsmb.3002. Epub 2015 Apr 6.

PMID:
25849142
24.

Structural and functional investigation of flavin binding center of the NqrC subunit of sodium-translocating NADH:quinone oxidoreductase from Vibrio harveyi.

Borshchevskiy V, Round E, Bertsova Y, Polovinkin V, Gushchin I, Ishchenko A, Kovalev K, Mishin A, Kachalova G, Popov A, Bogachev A, Gordeliy V.

PLoS One. 2015 Mar 3;10(3):e0118548. doi: 10.1371/journal.pone.0118548. eCollection 2015.

25.

Crystal structure of Escherichia coli-expressed Haloarcula marismortui bacteriorhodopsin I in the trimeric form.

Shevchenko V, Gushchin I, Polovinkin V, Round E, Borshchevskiy V, Utrobin P, Popov A, Balandin T, Büldt G, Gordeliy V.

PLoS One. 2014 Dec 5;9(12):e112873. doi: 10.1371/journal.pone.0112873. eCollection 2014.

26.

Low-dose X-ray radiation induces structural alterations in proteins.

Borshchevskiy V, Round E, Erofeev I, Weik M, Ishchenko A, Gushchin I, Mishin A, Willbold D, Büldt G, Gordeliy V.

Acta Crystallogr D Biol Crystallogr. 2014 Oct;70(Pt 10):2675-85. doi: 10.1107/S1399004714017295. Epub 2014 Sep 27.

PMID:
25286851
27.

Nanoparticle surface-enhanced Raman scattering of bacteriorhodopsin stabilized by amphipol A8-35.

Polovinkin V, Balandin T, Volkov O, Round E, Borshchevskiy V, Utrobin P, von Stetten D, Royant A, Willbold D, Arzumanyan G, Chupin V, Popot JL, Gordeliy V.

J Membr Biol. 2014 Oct;247(9-10):971-80. doi: 10.1007/s00232-014-9701-9. Epub 2014 Sep 6.

PMID:
25192978
28.

High-resolution structure of a membrane protein transferred from amphipol to a lipidic mesophase.

Polovinkin V, Gushchin I, Sintsov M, Round E, Balandin T, Chervakov P, Shevchenko V, Utrobin P, Popov A, Borshchevskiy V, Mishin A, Kuklin A, Willbold D, Chupin V, Popot JL, Gordeliy V.

J Membr Biol. 2014 Oct;247(9-10):997-1004. doi: 10.1007/s00232-014-9700-x. Epub 2014 Sep 6. Erratum in: J Membr Biol. 2017 Apr;250(2):237.

PMID:
25192977
29.

X-ray structure of a CDP-alcohol phosphatidyltransferase membrane enzyme and insights into its catalytic mechanism.

Nogly P, Gushchin I, Remeeva A, Esteves AM, Borges N, Ma P, Ishchenko A, Grudinin S, Round E, Moraes I, Borshchevskiy V, Santos H, Gordeliy V, Archer M.

Nat Commun. 2014 Jun 19;5:4169. doi: 10.1038/ncomms5169.

PMID:
24942835
30.

Structural insights into the proton pumping by unusual proteorhodopsin from nonmarine bacteria.

Gushchin I, Chervakov P, Kuzmichev P, Popov AN, Round E, Borshchevskiy V, Ishchenko A, Petrovskaya L, Chupin V, Dolgikh DA, Arseniev AS, Kirpichnikov M, Gordeliy V.

Proc Natl Acad Sci U S A. 2013 Jul 30;110(31):12631-6. doi: 10.1073/pnas.1221629110. Epub 2013 Jul 19. Erratum in: Proc Natl Acad Sci U S A. 2013 Sep 3;110(36):14813. Arseniev, Alexander A [corrected to Arseniev, Alexander S].

31.

Two distinct states of the HAMP domain from sensory rhodopsin transducer observed in unbiased molecular dynamics simulations.

Gushchin I, Gordeliy V, Grudinin S.

PLoS One. 2013 Jul 2;8(7):e66917. doi: 10.1371/journal.pone.0066917. Print 2013.

32.

Ground state structure of D75N mutant of sensory rhodopsin II in complex with its cognate transducer.

Ishchenko A, Round E, Borshchevskiy V, Grudinin S, Gushchin I, Klare JP, Balandin T, Remeeva A, Engelhard M, Büldt G, Gordeliy V.

J Photochem Photobiol B. 2013 Jun 5;123:55-8. doi: 10.1016/j.jphotobiol.2013.03.008. Epub 2013 Mar 29.

PMID:
23619282
33.

Gene gymnastics: Synthetic biology for baculovirus expression vector system engineering.

Vijayachandran LS, Thimiri Govinda Raj DB, Edelweiss E, Gupta K, Maier J, Gordeliy V, Fitzgerald DJ, Berger I.

Bioengineered. 2013 Sep-Oct;4(5):279-87. doi: 10.4161/bioe.22966. Epub 2013 Jan 17.

34.

A novel dimerization interface of cyclic nucleotide binding domain, which is disrupted in presence of cAMP: implications for CNG channels gating.

Gushchin IY, Gordeliy VI, Grudinin S.

J Mol Model. 2012 Sep;18(9):4053-60. doi: 10.1007/s00894-012-1404-5. Epub 2012 Apr 3.

PMID:
22476580
35.

Active state of sensory rhodopsin II: structural determinants for signal transfer and proton pumping.

Gushchin I, Reshetnyak A, Borshchevskiy V, Ishchenko A, Round E, Grudinin S, Engelhard M, Büldt G, Gordeliy V.

J Mol Biol. 2011 Sep 30;412(4):591-600. doi: 10.1016/j.jmb.2011.07.022. Epub 2011 Aug 4.

PMID:
21840321
36.

X-ray-radiation-induced changes in bacteriorhodopsin structure.

Borshchevskiy VI, Round ES, Popov AN, Büldt G, Gordeliy VI.

J Mol Biol. 2011 Jun 24;409(5):813-25. doi: 10.1016/j.jmb.2011.04.038. Epub 2011 Apr 21.

PMID:
21530535
37.

Role of the HAMP domain region of sensory rhodopsin transducers in signal transduction.

Gushchin IY, Gordeliy VI, Grudinin S.

Biochemistry. 2011 Feb 1;50(4):574-80. doi: 10.1021/bi101032a. Epub 2010 Dec 30.

PMID:
21162553
38.

Crystallography of membrane proteins: from crystallization to structure.

Deniaud A, Moiseeva E, Gordeliy V, Pebay-Peyroula E.

Methods Mol Biol. 2010;654:79-103. doi: 10.1007/978-1-60761-762-4_5.

PMID:
20665262
39.

Overcoming merohedral twinning in crystals of bacteriorhodopsin grown in lipidic mesophase.

Borshchevskiy V, Efremov R, Moiseeva E, Büldt G, Gordeliy V.

Acta Crystallogr D Biol Crystallogr. 2010 Jan;66(Pt 1):26-32. doi: 10.1107/S0907444909042838. Epub 2009 Dec 21.

PMID:
20057046
40.

Structural changes in dipalmitoylphosphatidylcholine bilayer promoted by Ca2+ ions: a small-angle neutron scattering study.

Uhríková D, Kucerka N, Teixeira J, Gordeliy V, Balgavý P.

Chem Phys Lipids. 2008 Oct;155(2):80-9. doi: 10.1016/j.chemphyslip.2008.07.010. Epub 2008 Jul 31.

PMID:
18721799
41.

Time-resolved microspectroscopy on a single crystal of bacteriorhodopsin reveals lattice-induced differences in the photocycle kinetics.

Efremov R, Gordeliy VI, Heberle J, Büldt G.

Biophys J. 2006 Aug 15;91(4):1441-51. Epub 2006 May 26.

42.

Strength of thermal undulations of phospholipid membranes.

Gordeliy VI, Cherezov V, Teixeira J.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Dec;72(6 Pt 1):061913. Epub 2005 Dec 20.

PMID:
16485980
43.

Development of the signal in sensory rhodopsin and its transfer to the cognate transducer.

Moukhametzianov R, Klare JP, Efremov R, Baeken C, Göppner A, Labahn J, Engelhard M, Büldt G, Gordeliy VI.

Nature. 2006 Mar 2;440(7080):115-9. Epub 2006 Feb 1.

PMID:
16452929
44.

Water molecules and hydrogen-bonded networks in bacteriorhodopsin--molecular dynamics simulations of the ground state and the M-intermediate.

Grudinin S, Büldt G, Gordeliy V, Baumgaertner A.

Biophys J. 2005 May;88(5):3252-61. Epub 2005 Feb 24.

45.

Physical detwinning of hemihedrally twinned hexagonal crystals of bacteriorhodopsin.

Efremov R, Moukhametzianov R, Büldt G, Gordeliy V.

Biophys J. 2004 Nov;87(5):3608-13. Epub 2004 Aug 31.

46.

Effects of gemini surfactants on egg phosphatidylcholine bilayers in the fluid lamellar phase.

Dubnicková M, Yaradaikin S, Lacko I, Devínsky F, Gordeliy V, Balgavý P.

Colloids Surf B Biointerfaces. 2004 Apr 1;34(3):161-4.

PMID:
15261069
47.

The archaeal sensory rhodopsin II/transducer complex: a model for transmembrane signal transfer.

Klare JP, Gordeliy VI, Labahn J, Büldt G, Steinhoff HJ, Engelhard M.

FEBS Lett. 2004 Apr 30;564(3):219-24. Review.

48.

Influence of local anesthetics on the phosphatidylcholine model membrane: small-angle synchrotron X-ray diffraction and neutron scattering study.

Uhríková D, Rapp G, Yaradaikin S, Gordeliy V, Balgavý P.

Biophys Chem. 2004 Jun 1;109(3):361-73.

PMID:
15110934
49.

Crystallization in lipidic cubic phases: a case study with bacteriorhodopsin.

Gordeliy VI, Schlesinger R, Efremov R, Büldt G, Heberle J.

Methods Mol Biol. 2003;228:305-16. No abstract available.

PMID:
12824562
50.

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