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Items: 29

1.

Diffusion-induced competitive two-site binding.

Gopich IV, Szabo A.

J Chem Phys. 2019 Mar 7;150(9):094104. doi: 10.1063/1.5079748.

PMID:
30849890
2.

Three-Color Single-Molecule FRET and Fluorescence Lifetime Analysis of Fast Protein Folding.

Yoo J, Louis JM, Gopich IV, Chung HS.

J Phys Chem B. 2018 Dec 13;122(49):11702-11720. doi: 10.1021/acs.jpcb.8b07768. Epub 2018 Oct 10.

PMID:
30230835
3.

Theory of Diffusion-Influenced Reaction Networks.

Gopich IV, Szabo A.

J Phys Chem B. 2018 Dec 13;122(49):11338-11354. doi: 10.1021/acs.jpcb.8b07250. Epub 2018 Oct 4.

PMID:
30215520
4.

Oligomerization of the tetramerization domain of p53 probed by two- and three-color single-molecule FRET.

Chung HS, Meng F, Kim JY, McHale K, Gopich IV, Louis JM.

Proc Natl Acad Sci U S A. 2017 Aug 15;114(33):E6812-E6821. doi: 10.1073/pnas.1700357114. Epub 2017 Jul 31.

5.

Reversible Stochastically Gated Diffusion-Influenced Reactions.

Gopich IV, Szabo A.

J Phys Chem B. 2016 Aug 25;120(33):8080-9. doi: 10.1021/acs.jpcb.6b00152. Epub 2016 Mar 22.

6.

Analysis of Fluorescence Lifetime and Energy Transfer Efficiency in Single-Molecule Photon Trajectories of Fast-Folding Proteins.

Chung HS, Louis JM, Gopich IV.

J Phys Chem B. 2016 Feb 4;120(4):680-99. doi: 10.1021/acs.jpcb.5b11351. Epub 2016 Jan 26.

7.

Influence of diffusion on the kinetics of multisite phosphorylation.

Gopich IV, Szabo A.

Protein Sci. 2016 Jan;25(1):244-54. doi: 10.1002/pro.2722. Epub 2015 Jul 7.

8.

Accuracy of maximum likelihood estimates of a two-state model in single-molecule FRET.

Gopich IV.

J Chem Phys. 2015 Jan 21;142(3):034110. doi: 10.1063/1.4904381.

9.

Fast single-molecule FRET spectroscopy: theory and experiment.

Chung HS, Gopich IV.

Phys Chem Chem Phys. 2014 Sep 21;16(35):18644-57. doi: 10.1039/c4cp02489c.

10.

Diffusion modifies the connectivity of kinetic schemes for multisite binding and catalysis.

Gopich IV, Szabo A.

Proc Natl Acad Sci U S A. 2013 Dec 3;110(49):19784-9. doi: 10.1073/pnas.1319943110. Epub 2013 Nov 18.

11.
12.

Theory of the energy transfer efficiency and fluorescence lifetime distribution in single-molecule FRET.

Gopich IV, Szabo A.

Proc Natl Acad Sci U S A. 2012 May 15;109(20):7747-52. doi: 10.1073/pnas.1205120109. Epub 2012 May 1.

13.

FRET efficiency distributions of multistate single molecules.

Gopich IV, Szabo A.

J Phys Chem B. 2010 Nov 25;114(46):15221-6. doi: 10.1021/jp105359z. Epub 2010 Oct 28.

14.

Relative contributions of intrinsic structural-functional constraints and translation rate to the evolution of protein-coding genes.

Wolf YI, Gopich IV, Lipman DJ, Koonin EV.

Genome Biol Evol. 2010 Jul 12;2:190-9. doi: 10.1093/gbe/evq010.

15.

Extracting rate coefficients from single-molecule photon trajectories and FRET efficiency histograms for a fast-folding protein.

Chung HS, Gopich IV, McHale K, Cellmer T, Louis JM, Eaton WA.

J Phys Chem A. 2011 Apr 28;115(16):3642-56. doi: 10.1021/jp1009669. Epub 2010 May 28.

16.

Protein dynamics from single-molecule fluorescence intensity correlation functions.

Gopich IV, Nettels D, Schuler B, Szabo A.

J Chem Phys. 2009 Sep 7;131(9):095102. doi: 10.1063/1.3212597.

17.

Decoding the pattern of photon colors in single-molecule FRET.

Gopich IV, Szabo A.

J Phys Chem B. 2009 Aug 6;113(31):10965-73. doi: 10.1021/jp903671p.

18.

Concentration effects in "single-molecule" spectroscopy.

Gopich IV.

J Phys Chem B. 2008 May 15;112(19):6214-20. Epub 2007 Dec 22.

PMID:
18154285
19.

Effect of flexibility and cis residues in single-molecule FRET studies of polyproline.

Best RB, Merchant KA, Gopich IV, Schuler B, Bax A, Eaton WA.

Proc Natl Acad Sci U S A. 2007 Nov 27;104(48):18964-9. Epub 2007 Nov 20.

20.

Single-molecule FRET with diffusion and conformational dynamics.

Gopich IV, Szabo A.

J Phys Chem B. 2007 Nov 8;111(44):12925-32. Epub 2007 Oct 12.

PMID:
17929964
21.

Ultrafast dynamics of protein collapse from single-molecule photon statistics.

Nettels D, Gopich IV, Hoffmann A, Schuler B.

Proc Natl Acad Sci U S A. 2007 Feb 20;104(8):2655-60. Epub 2007 Feb 14.

22.

Characterizing the unfolded states of proteins using single-molecule FRET spectroscopy and molecular simulations.

Merchant KA, Best RB, Louis JM, Gopich IV, Eaton WA.

Proc Natl Acad Sci U S A. 2007 Jan 30;104(5):1528-33. Epub 2007 Jan 24.

23.

When does the Michaelis-Menten equation hold for fluctuating enzymes?

Min W, Gopich IV, English BP, Kou SC, Xie XS, Szabo A.

J Phys Chem B. 2006 Oct 19;110(41):20093-7.

PMID:
17034179
24.

Photon counting histograms for diffusing fluorophores.

Gopich IV, Szabo A.

J Phys Chem B. 2005 Sep 22;109(37):17683-8.

PMID:
16853263
25.
26.
27.

Translocation of rodlike polymers through membrane channels.

Berezhkovskii AM, Gopich IV.

Biophys J. 2003 Feb;84(2 Pt 1):787-93.

28.

Long-time tails in the kinetics of reversible bimolecular reactions.

Gopich IV, Ovchinnikov AA, Szabo A.

Phys Rev Lett. 2001 Jan 29;86(5):922-5.

PMID:
11177974
29.

Rigorous derivation of the long-time asymptotics for reversible binding

Gopich IV IV, Agmon N.

Phys Rev Lett. 2000 Mar 20;84(12):2730-3.

PMID:
11017311

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