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Antibodies against the DNABII protein integration host factor (IHF) inhibit sinus implant biofilms.

Martyn L, Sethia R, Chon R, Novotny L, Goodman SD, Elmaraghy C, Bakaletz LO.

Laryngoscope. 2019 Jul 17. doi: 10.1002/lary.28188. [Epub ahead of print]


Identification of essential biofilm proteins in middle ear fluids of otitis media with effusion patients.

Barron CL, Kamel-Abusalha LB, Sethia R, Goodman SD, Elmaraghy CA, Bakaletz LO.

Laryngoscope. 2019 Apr 25. doi: 10.1002/lary.28011. [Epub ahead of print]


Development of a Standardized Scoring System to Assess a Murine Model of Clostridium difficile Colitis.

Shelby RD, Tengberg N, Conces M, Olson JK, Navarro JB, Bailey MT, Goodman SD, Besner GE.

J Invest Surg. 2019 Mar 20:1-9. doi: 10.1080/08941939.2019.1571129. [Epub ahead of print]


The conserved mosaic prophage protein paratox inhibits the natural competence regulator ComR in Streptococcus.

Mashburn-Warren L, Goodman SD, Federle MJ, Prehna G.

Sci Rep. 2018 Nov 8;8(1):16535. doi: 10.1038/s41598-018-34816-7.


Proofreading and DNA Repair Assay Using Single Nucleotide Extension and MALDI-TOF Mass Spectrometry Analysis.

Su KY, Goodman SD, Lai HM, Yen RS, Hu WY, Cheng WC, Lin LI, Yang YC, Fang WH.

J Vis Exp. 2018 Jun 19;(136). doi: 10.3791/57862.


An enhanced Lactobacillus reuteri biofilm formulation that increases protection against experimental necrotizing enterocolitis.

Olson JK, Navarro JB, Allen JM, McCulloh CJ, Mashburn-Warren L, Wang Y, Varaljay VA, Bailey MT, Goodman SD, Besner GE.

Am J Physiol Gastrointest Liver Physiol. 2018 Sep 1;315(3):G408-G419. doi: 10.1152/ajpgi.00078.2018. Epub 2018 May 31.


DNA polymerase I proofreading exonuclease activity is required for endonuclease V repair pathway both in vitro and in vivo.

Su KY, Lin LI, Goodman SD, Yen RS, Wu CY, Chang WC, Yang YC, Cheng WC, Fang WH.

DNA Repair (Amst). 2018 Apr;64:59-67. doi: 10.1016/j.dnarep.2018.02.005. Epub 2018 Feb 17.


Targeting the HUβ Protein Prevents Porphyromonas gingivalis from Entering into Preexisting Biofilms.

Rocco CJ, Bakaletz LO, Goodman SD.

J Bacteriol. 2018 May 9;200(11). pii: e00790-17. doi: 10.1128/JB.00790-17. Print 2018 Jun 1.


The DNABII family of proteins is comprised of the only nucleoid associated proteins required for nontypeable Haemophilus influenzae biofilm structure.

Devaraj A, Buzzo J, Rocco CJ, Bakaletz LO, Goodman SD.

Microbiologyopen. 2018 Jun;7(3):e00563. doi: 10.1002/mbo3.563. Epub 2017 Dec 12.


Application of single nucleotide extension and MALDI-TOF mass spectrometry in proofreading and DNA repair assay.

Su KY, Lai HM, Goodman SD, Hu WY, Cheng WC, Lin LI, Yang YC, Fang WH.

DNA Repair (Amst). 2018 Jan;61:63-75. doi: 10.1016/j.dnarep.2017.11.011. Epub 2017 Dec 2.


Nontypeable Haemophilus influenzae releases DNA and DNABII proteins via a T4SS-like complex and ComE of the type IV pilus machinery.

Jurcisek JA, Brockman KL, Novotny LA, Goodman SD, Bakaletz LO.

Proc Natl Acad Sci U S A. 2017 Aug 8;114(32):E6632-E6641. doi: 10.1073/pnas.1705508114. Epub 2017 Jul 10.


Novel method for the depletion of cariogenic bacteria using dextranomer microspheres.

Mashburn-Warren L, Downey JS, Goodman SD.

Mol Oral Microbiol. 2017 Dec;32(6):475-489. doi: 10.1111/omi.12186. Epub 2017 Jun 26.


Enhanced Probiotic Potential of Lactobacillus reuteri When Delivered as a Biofilm on Dextranomer Microspheres That Contain Beneficial Cargo.

Navarro JB, Mashburn-Warren L, Bakaletz LO, Bailey MT, Goodman SD.

Front Microbiol. 2017 Mar 27;8:489. doi: 10.3389/fmicb.2017.00489. eCollection 2017.


Transcutaneous Immunization with a Band-Aid Prevents Experimental Otitis Media in a Polymicrobial Model.

Novotny LA, Clements JD, Goodman SD, Bakaletz LO.

Clin Vaccine Immunol. 2017 Jun 5;24(6). pii: e00563-16. doi: 10.1128/CVI.00563-16. Print 2017 Jun.


Identification of biofilms in post-tympanostomy tube otorrhea.

Idicula WK, Jurcisek JA, Cass ND, Ali S, Goodman SD, Elmaraghy CA, Jatana KR, Bakaletz LO.

Laryngoscope. 2016 Aug;126(8):1946-51. doi: 10.1002/lary.25826. Epub 2016 Jan 4.


Novel antimicrobial peptide prevents C. rodentium infection in C57BL/6 mice by enhancing acid-induced pathogen killing.

Lackraj T, Johnson-Henry K, Sherman PM, Goodman SD, Segall AM, Barnett Foster D.

Microbiology. 2016 Sep;162(9):1641-1650. doi: 10.1099/mic.0.000335. Epub 2016 Jul 13.


Monoclonal antibodies against DNA-binding tips of DNABII proteins disrupt biofilms in vitro and induce bacterial clearance in vivo.

Novotny LA, Jurcisek JA, Goodman SD, Bakaletz LO.

EBioMedicine. 2016 Aug;10:33-44. doi: 10.1016/j.ebiom.2016.06.022. Epub 2016 Jun 16.


Harvesting the benefits of biofilms: A novel probiotic delivery system for the prevention of necrotizing enterocolitis.

Olson JK, Rager TM, Navarro JB, Mashburn-Warren L, Goodman SD, Besner GE.

J Pediatr Surg. 2016 Jun;51(6):936-41. doi: 10.1016/j.jpedsurg.2016.02.062. Epub 2016 Mar 2.


Natural antigenic differences in the functionally equivalent extracellular DNABII proteins of bacterial biofilms provide a means for targeted biofilm therapeutics.

Rocco CJ, Davey ME, Bakaletz LO, Goodman SD.

Mol Oral Microbiol. 2017 Apr;32(2):118-130. doi: 10.1111/omi.12157. Epub 2016 Apr 25.


A bacterial-biofilm-induced oral osteolytic infection can be successfully treated by immuno-targeting an extracellular nucleoid-associated protein.

Freire MO, Devaraj A, Young A, Navarro JB, Downey JS, Chen C, Bakaletz LO, Zadeh HH, Goodman SD.

Mol Oral Microbiol. 2017 Feb;32(1):74-88. doi: 10.1111/omi.12155. Epub 2016 Apr 5.


Deoxyinosine repair in nuclear extracts of human cells.

Lee CC, Yang YC, Goodman SD, Chen S, Huang TY, Cheng WC, Lin LI, Fang WH.

Cell Biosci. 2015 Sep 8;5:52. doi: 10.1186/s13578-015-0044-8. eCollection 2015.


DNABII proteins play a central role in UPEC biofilm structure.

Devaraj A, Justice SS, Bakaletz LO, Goodman SD.

Mol Microbiol. 2015 Jun;96(6):1119-35. doi: 10.1111/mmi.12994. Epub 2015 Apr 16.


Antibodies against the majority subunit of type IV Pili disperse nontypeable Haemophilus influenzae biofilms in a LuxS-dependent manner and confer therapeutic resolution of experimental otitis media.

Novotny LA, Jurcisek JA, Ward MO Jr, Jordan ZB, Goodman SD, Bakaletz LO.

Mol Microbiol. 2015 Apr;96(2):276-92. doi: 10.1111/mmi.12934. Epub 2015 Feb 15.


In vitro manganese-dependent cross-talk between Streptococcus mutans VicK and GcrR: implications for overlapping stress response pathways.

Downey JS, Mashburn-Warren L, Ayala EA, Senadheera DB, Hendrickson WK, McCall LW, Sweet JG, Cvitkovitch DG, Spatafora GA, Goodman SD.

PLoS One. 2014 Dec 23;9(12):e115975. doi: 10.1371/journal.pone.0115975. eCollection 2014.


A biochemical characterization of the DNA binding activity of the response regulator VicR from Streptococcus mutans.

Ayala E, Downey JS, Mashburn-Warren L, Senadheera DB, Cvitkovitch DG, Goodman SD.

PLoS One. 2014 Sep 17;9(9):e108027. doi: 10.1371/journal.pone.0108027. eCollection 2014.


Evaluation of the kinetics and mechanism of action of anti-integration host factor-mediated disruption of bacterial biofilms.

Brockson ME, Novotny LA, Mokrzan EM, Malhotra S, Jurcisek JA, Akbar R, Devaraj A, Goodman SD, Bakaletz LO.

Mol Microbiol. 2014 Sep;93(6):1246-58. doi: 10.1111/mmi.12735. Epub 2014 Aug 19.


A biochemical analysis of the interaction of Porphyromonas gingivalis HU PG0121 protein with DNA.

Tjokro NO, Rocco CJ, Priyadarshini R, Davey ME, Goodman SD.

PLoS One. 2014 Mar 28;9(3):e93266. doi: 10.1371/journal.pone.0093266. eCollection 2014.


Chaperoning HMGA2 protein protects stalled replication forks in stem and cancer cells.

Yu H, Lim HH, Tjokro NO, Sathiyanathan P, Natarajan S, Chew TW, Klonisch T, Goodman SD, Surana U, Dröge P.

Cell Rep. 2014 Feb 27;6(4):684-97. doi: 10.1016/j.celrep.2014.01.014. Epub 2014 Feb 6.


The excision of 3' penultimate errors by DNA polymerase I and its role in endonuclease V-mediated DNA repair.

Lee CC, Yang YC, Goodman SD, Lin CJ, Chen YA, Wang YT, Cheng WC, Lin LI, Fang WH.

DNA Repair (Amst). 2013 Nov;12(11):899-911. doi: 10.1016/j.dnarep.2013.08.003. Epub 2013 Sep 5.


Structural stability of Burkholderia cenocepacia biofilms is reliant on eDNA structure and presence of a bacterial nucleic acid binding protein.

Novotny LA, Amer AO, Brockson ME, Goodman SD, Bakaletz LO.

PLoS One. 2013 Jun 14;8(6):e67629. doi: 10.1371/journal.pone.0067629. Print 2013.


Antibodies directed against integration host factor mediate biofilm clearance from Nasopore.

Brandstetter KA, Jurcisek JA, Goodman SD, Bakaletz LO, Das S.

Laryngoscope. 2013 Nov;123(11):2626-32. doi: 10.1002/lary.24183. Epub 2013 May 13.


Mechanistic insights revealed by the crystal structure of a histidine kinase with signal transducer and sensor domains.

Wang C, Sang J, Wang J, Su M, Downey JS, Wu Q, Wang S, Cai Y, Xu X, Wu J, Senadheera DB, Cvitkovitch DG, Chen L, Goodman SD, Han A.

PLoS Biol. 2013;11(2):e1001493. doi: 10.1371/journal.pbio.1001493. Epub 2013 Feb 26.


The nucleoid-associated protein HUβ affects global gene expression in Porphyromonas gingivalis.

Priyadarshini R, Cugini C, Arndt A, Chen T, Tjokro NO, Goodman SD, Davey ME.

Microbiology. 2013 Feb;159(Pt 2):219-29. doi: 10.1099/mic.0.061002-0. Epub 2012 Nov 22.


Targeting bacterial integration host factor to disrupt biofilms associated with cystic fibrosis.

Gustave JE, Jurcisek JA, McCoy KS, Goodman SD, Bakaletz LO.

J Cyst Fibros. 2013 Jul;12(4):384-9. doi: 10.1016/j.jcf.2012.10.011. Epub 2012 Nov 17.


Aberrant community architecture and attenuated persistence of uropathogenic Escherichia coli in the absence of individual IHF subunits.

Justice SS, Li B, Downey JS, Dabdoub SM, Brockson ME, Probst GD, Ray WC, Goodman SD.

PLoS One. 2012;7(10):e48349. doi: 10.1371/journal.pone.0048349. Epub 2012 Oct 25.


Regulation of bacteriocin production and cell death by the VicRK signaling system in Streptococcus mutans.

Senadheera DB, Cordova M, Ayala EA, Chávez de Paz LE, Singh K, Downey JS, Svensäter G, Goodman SD, Cvitkovitch DG.

J Bacteriol. 2012 Mar;194(6):1307-16. doi: 10.1128/JB.06071-11. Epub 2012 Jan 6.


Oligomerization of the response regulator ComE from Streptococcus mutans is affected by phosphorylation.

Hung DC, Downey JS, Kreth J, Qi F, Shi W, Cvitkovitch DG, Goodman SD.

J Bacteriol. 2012 Mar;194(5):1127-35. doi: 10.1128/JB.06565-11. Epub 2011 Dec 30.


Biofilms can be dispersed by focusing the immune system on a common family of bacterial nucleoid-associated proteins.

Goodman SD, Obergfell KP, Jurcisek JA, Novotny LA, Downey JS, Ayala EA, Tjokro N, Li B, Justice SS, Bakaletz LO.

Mucosal Immunol. 2011 Nov;4(6):625-37. doi: 10.1038/mi.2011.27. Epub 2011 Jun 29.


Characterization of DNA binding sites of the ComE response regulator from Streptococcus mutans.

Hung DC, Downey JS, Ayala EA, Kreth J, Mair R, Senadheera DB, Qi F, Cvitkovitch DG, Shi W, Goodman SD.

J Bacteriol. 2011 Jul;193(14):3642-52. doi: 10.1128/JB.00155-11. Epub 2011 May 20.


A novel antimicrobial peptide significantly enhances acid-induced killing of Shiga toxin-producing Escherichia coli O157 and non-O157 serotypes.

Lino M, Kus JV, Tran SL, Naqvi Z, Binnington B, Goodman SD, Segall AM, Foster DB.

Microbiology. 2011 Jun;157(Pt 6):1768-75. doi: 10.1099/mic.0.047365-0. Epub 2011 Mar 31.


Development of an animal model for Aggregatibacter actinomycetemcomitans biofilm-mediated oral osteolytic infection: a preliminary study.

Freire MO, Sedghizadeh PP, Schaudinn C, Gorur A, Downey JS, Choi JH, Chen W, Kook JK, Chen C, Goodman SD, Zadeh HH.

J Periodontol. 2011 May;82(5):778-89. doi: 10.1902/jop.2010.100263. Epub 2011 Jan 11.


Endonuclease V-mediated deoxyinosine excision repair in vitro.

Lee CC, Yang YC, Goodman SD, Yu YH, Lin SB, Kao JT, Tsai KS, Fang WH.

DNA Repair (Amst). 2010 Oct 5;9(10):1073-9. doi: 10.1016/j.dnarep.2010.07.007. Epub 2010 Aug 8. Erratum in: DNA Repair (Amst). 2011 Feb 7;10(2):250.


Regulation of ciaXRH operon expression and identification of the CiaR regulon in Streptococcus mutans.

Wu C, Ayala EA, Downey JS, Merritt J, Goodman SD, Qi F.

J Bacteriol. 2010 Sep;192(18):4669-79. doi: 10.1128/JB.00556-10. Epub 2010 Jul 16.


Characterization of a glutamate transporter operon, glnQHMP, in Streptococcus mutans and its role in acid tolerance.

Krastel K, Senadheera DB, Mair R, Downey JS, Goodman SD, Cvitkovitch DG.

J Bacteriol. 2010 Feb;192(4):984-93. doi: 10.1128/JB.01169-09. Epub 2009 Dec 18.


HMGA2 exhibits dRP/AP site cleavage activity and protects cancer cells from DNA-damage-induced cytotoxicity during chemotherapy.

Summer H, Li O, Bao Q, Zhan L, Peter S, Sathiyanathan P, Henderson D, Klonisch T, Goodman SD, Dröge P.

Nucleic Acids Res. 2009 Jul;37(13):4371-84. doi: 10.1093/nar/gkp375. Epub 2009 May 21.


Escherichia coli HU protein has a role in the repair of abasic sites in DNA.

Kow YW, Imhoff B, Weiss B, Hung DC, Hindoyan AA, Story RM, Goodman SD.

Nucleic Acids Res. 2009 Jun;37(10):3474. doi: 10.1093/nar/gkp454. Epub 2009 May 19. No abstract available.


Reciprocal expression of integration host factor and HU in the developmental cycle and infectivity of Legionella pneumophila.

Morash MG, Brassinga AK, Warthan M, Gourabathini P, Garduño RA, Goodman SD, Hoffman PS.

Appl Environ Microbiol. 2009 Apr;75(7):1826-37. doi: 10.1128/AEM.02756-08. Epub 2009 Feb 5.


Early detection of oxidized surfaces using Shewanella oneidensis MR-1 as a tool.

Waters MS, Salas EC, Goodman SD, Udwadia FE, Nealson KH.

Biofouling. 2009;25(2):163-72. doi: 10.1080/08927010802627184.


Simultaneous interferometric measurement of corrosive or demineralizing bacteria and their mineral interfaces.

Waters MS, El-Naggar MY, Hsu L, Sturm CA, Luttge A, Udwadia FE, Cvitkovitch DG, Goodman SD, Nealson KH.

Appl Environ Microbiol. 2009 Mar;75(5):1445-9. doi: 10.1128/AEM.02039-08. Epub 2009 Jan 5.


In search of the microbe/mineral interface: quantitative analysis of bacteria on metal surfaces using vertical scanning interferometry.

Waters MS, Sturm CA, El-Naggar MY, Luttge A, Udwadia FE, Cvitkovitch DG, Goodman SD, Nealson KH.

Geobiology. 2008 Jun;6(3):254-62. doi: 10.1111/j.1472-4669.2008.00161.x. Epub 2008 May 6.


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