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Items: 1 to 50 of 222

1.

Development of a computational model for acute ischemic stroke recanalization through cyclic aspiration.

Good BC, Simon S, Manning K, Costanzo F.

Biomech Model Mechanobiol. 2019 Nov 4. doi: 10.1007/s10237-019-01247-w. [Epub ahead of print]

PMID:
31686306
2.

Gene Ontology Causal Activity Modeling (GO-CAM) moves beyond GO annotations to structured descriptions of biological functions and systems.

Thomas PD, Hill DP, Mi H, Osumi-Sutherland D, Van Auken K, Carbon S, Balhoff JP, Albou LP, Good B, Gaudet P, Lewis SE, Mungall CJ.

Nat Genet. 2019 Oct;51(10):1429-1433. doi: 10.1038/s41588-019-0500-1. No abstract available.

PMID:
31548717
3.

Applying Citizen Science to Gene, Drug, and Disease Relationship Extraction from Biomedical Abstracts.

Tsueng G, Nanis M, Fouquier JT, Mayers M, Good BM, Su AI.

Bioinformatics. 2019 Sep 3. pii: btz678. doi: 10.1093/bioinformatics/btz678. [Epub ahead of print]

PMID:
31504205
4.

Family-Centered Rounds: Past, Present, and Future.

Destino LA, Shah SS, Good B.

Pediatr Clin North Am. 2019 Aug;66(4):827-837. doi: 10.1016/j.pcl.2019.03.008. Epub 2019 May 23. Review.

PMID:
31230625
5.

Early psychosis in Indonesia: reflections on illness and treatment.

Good BJ, Marchira CR, Subandi MA, Mediola F, Tyas TH, Good MD.

Int Rev Psychiatry. 2019 Aug - Sep;31(5-6):510-522. doi: 10.1080/09540261.2019.1604495. Epub 2019 Jun 21.

PMID:
31225765
6.

ChlamBase: a curated model organism database for the Chlamydia research community.

Putman T, Hybiske K, Jow D, Afrasiabi C, Lelong S, Cano MA, Stupp GS, Waagmeester A, Good BM, Wu C, Su AI.

Database (Oxford). 2019 Jan 1;2019. pii: baz091. doi: 10.1093/database/baz091. No abstract available.

7.

Evolutionary dynamics of bacteria in the gut microbiome within and across hosts.

Garud NR, Good BH, Hallatschek O, Pollard KS.

PLoS Biol. 2019 Jan 23;17(1):e3000102. doi: 10.1371/journal.pbio.3000102. eCollection 2019 Jan.

8.

Effective models and the search for quantitative principles in microbial evolution.

Good BH, Hallatschek O.

Curr Opin Microbiol. 2018 Oct;45:203-212. doi: 10.1016/j.mib.2018.11.005. Epub 2018 Dec 6. Review.

PMID:
30530175
9.

Patient safety after implementation of a coproduced family centered communication programme: multicenter before and after intervention study.

Khan A, Spector ND, Baird JD, Ashland M, Starmer AJ, Rosenbluth G, Garcia BM, Litterer KP, Rogers JE, Dalal AK, Lipsitz S, Yoon CS, Zigmont KR, Guiot A, O'Toole JK, Patel A, Bismilla Z, Coffey M, Langrish K, Blankenburg RL, Destino LA, Everhart JL, Good BP, Kocolas I, Srivastava R, Calaman S, Cray S, Kuzma N, Lewis K, Thompson ED, Hepps JH, Lopreiato JO, Yu CE, Haskell H, Kruvand E, Micalizzi DA, Alvarado-Little W, Dreyer BP, Yin HS, Subramony A, Patel SJ, Sectish TC, West DC, Landrigan CP.

BMJ. 2018 Dec 5;363:k4764. doi: 10.1136/bmj.k4764.

10.

Adaptation limits ecological diversification and promotes ecological tinkering during the competition for substitutable resources.

Good BH, Martis S, Hallatschek O.

Proc Natl Acad Sci U S A. 2018 Oct 30;115(44):E10407-E10416. doi: 10.1073/pnas.1807530115. Epub 2018 Oct 15.

11.

Inter-Laboratory Characterization of the Velocity Field in the FDA Blood Pump Model Using Particle Image Velocimetry (PIV).

Hariharan P, Aycock KI, Buesen M, Day SW, Good BC, Herbertson LH, Steinseifer U, Manning KB, Craven BA, Malinauskas RA.

Cardiovasc Eng Technol. 2018 Dec;9(4):623-640. doi: 10.1007/s13239-018-00378-y. Epub 2018 Oct 5.

PMID:
30291585
12.

Spatial patterns of Fasciola hepatica and Calicophoron daubneyi infections in ruminants in Ireland and modelling of C. daubneyi infection.

Naranjo-Lucena A, Munita Corbalán MP, Martínez-Ibeas AM, McGrath G, Murray G, Casey M, Good B, Sayers R, Mulcahy G, Zintl A.

Parasit Vectors. 2018 Sep 29;11(1):531. doi: 10.1186/s13071-018-3114-z.

13.

Live weight as a basis for targeted selective treatment of lambs post-weaning.

Keegan JD, Good B, Hanrahan JP, Lynch C, de Waal T, Keane OM.

Vet Parasitol. 2018 Jul 15;258:8-13. doi: 10.1016/j.vetpar.2018.06.001. Epub 2018 Jun 4.

PMID:
30105984
14.

The Effect of Strong Purifying Selection on Genetic Diversity.

Cvijović I, Good BH, Desai MM.

Genetics. 2018 Aug;209(4):1235-1278. doi: 10.1534/genetics.118.301058. Epub 2018 May 29.

15.

Characterizing the HeartMate II Left Ventricular Assist Device Outflow Using Particle Image Velocimetry.

Rowlands GW, Good BC, Deutsch S, Manning KB.

J Biomech Eng. 2018 Jul 1;140(7). doi: 10.1115/1.4039822.

PMID:
29715362
16.

Shame as a cultural index of illness and recovery from psychotic illness in Java.

Subandi MA, Good BJ.

Asian J Psychiatr. 2018 Apr;34:33-37. doi: 10.1016/j.ajp.2018.04.005. Epub 2018 Apr 3.

PMID:
29631148
17.

An independent validation study of loci associated with nematode resistance in sheep.

Keane OM, Hanrahan JP, McRae KM, Good B.

Anim Genet. 2018 Jun;49(3):265-268. doi: 10.1111/age.12649. Epub 2018 Mar 23.

PMID:
29570808
18.

Epidemiological investigation of a severe rumen fluke outbreak on an Irish dairy farm.

O'Shaughnessy J, Garcia-Campos A, McAloon CG, Fagan S, de Waal T, McElroy M, Casey M, Good B, Mulcahy G, Fagan J, Murphy D, Zintl A.

Parasitology. 2018 Jun;145(7):948-952. doi: 10.1017/S0031182017002086. Epub 2017 Nov 16.

PMID:
29143720
19.

The effect of artificial selection on phenotypic plasticity in maize.

Gage JL, Jarquin D, Romay C, Lorenz A, Buckler ES, Kaeppler S, Alkhalifah N, Bohn M, Campbell DA, Edwards J, Ertl D, Flint-Garcia S, Gardiner J, Good B, Hirsch CN, Holland J, Hooker DC, Knoll J, Kolkman J, Kruger G, Lauter N, Lawrence-Dill CJ, Lee E, Lynch J, Murray SC, Nelson R, Petzoldt J, Rocheford T, Schnable J, Schnable PS, Scully B, Smith M, Springer NM, Srinivasan S, Walton R, Weldekidan T, Wisser RJ, Xu W, Yu J, de Leon N.

Nat Commun. 2017 Nov 7;8(1):1348. doi: 10.1038/s41467-017-01450-2.

20.

Brief interactive psychoeducation for caregivers of patients with early phase psychosis in Yogyakarta, Indonesia.

Marchira CR, Supriyanto I, Subandi S, Good MJD, Good BJ.

Early Interv Psychiatry. 2019 Jun;13(3):469-476. doi: 10.1111/eip.12506. Epub 2017 Oct 20.

PMID:
29052964
21.

The dynamics of molecular evolution over 60,000 generations.

Good BH, McDonald MJ, Barrick JE, Lenski RE, Desai MM.

Nature. 2017 Nov 2;551(7678):45-50. doi: 10.1038/nature24287. Epub 2017 Oct 18.

22.

Asynchronous Pumping of a Pulsatile Ventricular Assist Device in a Pediatric Anastomosis Model.

Good BC, Weiss WJ, Deutsch S, Manning KB.

World J Pediatr Congenit Heart Surg. 2017 Jul;8(4):511-519. doi: 10.1177/2150135117713697.

23.

Toward the Virtual Benchmarking of Pneumatic Ventricular Assist Devices: Application of a Novel Fluid-Structure Interaction-Based Strategy to the Penn State 12 cc Device.

Caimi A, Sturla F, Good B, Vidotto M, De Ponti R, Piatti F, Manning KB, Redaelli A.

J Biomech Eng. 2017 Aug 1;139(8). doi: 10.1115/1.4036936.

24.

WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata.

Putman TE, Lelong S, Burgstaller-Muehlbacher S, Waagmeester A, Diesh C, Dunn N, Munoz-Torres M, Stupp GS, Wu C, Su AI, Good BM.

Database (Oxford). 2017 Jan 1;2017(1). doi: 10.1093/database/bax025.

25.

Can the amount of digestible undegraded protein offered to ewes during late pregnancy affect the performance and immune response of their offspring to gastrointestinal nematodes?

Sebastiano RS, Sweeney T, Good B, Hanrahan JP, Keady TW.

Vet Parasitol. 2017 Mar 15;236:42-50. doi: 10.1016/j.vetpar.2017.01.021. Epub 2017 Jan 28.

PMID:
28288763
26.

Families as Partners in Hospital Error and Adverse Event Surveillance.

Khan A, Coffey M, Litterer KP, Baird JD, Furtak SL, Garcia BM, Ashland MA, Calaman S, Kuzma NC, O'Toole JK, Patel A, Rosenbluth G, Destino LA, Everhart JL, Good BP, Hepps JH, Dalal AK, Lipsitz SR, Yoon CS, Zigmont KR, Srivastava R, Starmer AJ, Sectish TC, Spector ND, West DC, Landrigan CP; the Patient and Family Centered I-PASS Study Group, Allair BK, Alminde C, Alvarado-Little W, Atsatt M, Aylor ME, Bale JF Jr, Balmer D, Barton KT, Beck C, Bismilla Z, Blankenburg RL, Chandler D, Choudhary A, Christensen E, Coghlan-McDonald S, Cole FS, Corless E, Cray S, Da Silva R, Dahale D, Dreyer B, Growdon AS, Gubler L, Guiot A, Harris R, Haskell H, Kocolas I, Kruvand E, Lane MM, Langrish K, Ledford CJW, Lewis K, Lopreiato JO, Maloney CG, Mangan A, Markle P, Mendoza F, Micalizzi DA, Mittal V, Obermeyer M, O'Donnell KA, Ottolini M, Patel SJ, Pickler R, Rogers JE, Sanders LM, Sauder K, Shah SS, Sharma M, Simpkin A, Subramony A, Thompson ED Jr, Trueman L, Trujillo T, Turmelle MP, Warnick C, Welch C, White AJ, Wien MF, Winn AS, Wintch S, Wolf M, Yin HS, Yu CE.

JAMA Pediatr. 2017 Apr 1;171(4):372-381. doi: 10.1001/jamapediatrics.2016.4812. Erratum in: JAMA Pediatr. 2018 Mar 1;172(3):302.

27.

Genetic basis of benzimidazole resistance in Teladorsagia circumcincta in Ireland.

Keegan JD, Good B, de Waal T, Fanning J, Keane OM.

Ir Vet J. 2017 Feb 13;70:8. doi: 10.1186/s13620-017-0087-8. eCollection 2017.

28.

Can the amount of digestible undegraded protein offered to ewes in late pregnancy affect the periparturient change in resistance to gastrointestinal nematodes?

Sebastiano RS, Sweeney T, Keady TW, Hanrahan JP, Good B.

Vet Parasitol. 2017 Feb 15;235:8-16. doi: 10.1016/j.vetpar.2016.12.019. Epub 2017 Jan 7.

PMID:
28215873
29.

A nationwide survey of anthelmintic treatment failure on sheep farms in Ireland.

Keegan JD, Keane OM, Good B, De Waal T, Denny M, Hanrahan JP, Fitzgerald W, Sheehan M.

Ir Vet J. 2017 Feb 9;70:7. doi: 10.1186/s13620-017-0086-9. eCollection 2017.

30.

Ticks and Tick-borne diseases in Ireland.

Zintl A, Moutailler S, Stuart P, Paredis L, Dutraive J, Gonzalez E, O'Connor J, Devillers E, Good B, OMuireagain C, De Waal T, Morris F, Gray J.

Ir Vet J. 2017 Jan 31;70:4. doi: 10.1186/s13620-017-0084-y. eCollection 2017. Review.

31.

CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer.

Griffith M, Spies NC, Krysiak K, McMichael JF, Coffman AC, Danos AM, Ainscough BJ, Ramirez CA, Rieke DT, Kujan L, Barnell EK, Wagner AH, Skidmore ZL, Wollam A, Liu CJ, Jones MR, Bilski RL, Lesurf R, Feng YY, Shah NM, Bonakdar M, Trani L, Matlock M, Ramu A, Campbell KM, Spies GC, Graubert AP, Gangavarapu K, Eldred JM, Larson DE, Walker JR, Good BM, Wu C, Su AI, Dienstmann R, Margolin AA, Tamborero D, Lopez-Bigas N, Jones SJ, Bose R, Spencer DH, Wartman LD, Wilson RK, Mardis ER, Griffith OL.

Nat Genet. 2017 Jan 31;49(2):170-174. doi: 10.1038/ng.3774. No abstract available.

32.

FDA Benchmark Medical Device Flow Models for CFD Validation.

Malinauskas RA, Hariharan P, Day SW, Herbertson LH, Buesen M, Steinseifer U, Aycock KI, Good BC, Deutsch S, Manning KB, Craven BA.

ASAIO J. 2017 Mar/Apr;63(2):150-160. doi: 10.1097/MAT.0000000000000499.

PMID:
28114192
33.

Evolution of Mutation Rates in Rapidly Adapting Asexual Populations.

Good BH, Desai MM.

Genetics. 2016 Nov;204(3):1249-1266. doi: 10.1534/genetics.116.193565. Epub 2016 Sep 19.

34.

General optimization of tapered anti-reflective coatings.

Good BL, Simmons S, Mirotznik M.

Opt Express. 2016 Jul 25;24(15):16618-29. doi: 10.1364/OE.24.016618.

PMID:
27464116
35.

Immunogenomics of gastrointestinal nematode infection in ruminants - breeding for resistance to produce food sustainably and safely.

Sweeney T, Hanrahan JP, Ryan MT, Good B.

Parasite Immunol. 2016 Sep;38(9):569-86. doi: 10.1111/pim.12347. Review.

36.

Erratum to: Continuous and Pulsatile Pediatric Ventricular Assist Device Hemodynamics with a Viscoelastic Blood Model.

Good BC, Deutsch S, Manning KB.

Cardiovasc Eng Technol. 2016 Sep;7(3):305-307. No abstract available.

PMID:
27385223
37.

Analysis of Transitional and Turbulent Flow Through the FDA Benchmark Nozzle Model Using Laser Doppler Velocimetry.

Taylor JO, Good BC, Paterno AV, Hariharan P, Deutsch S, Malinauskas RA, Manning KB.

Cardiovasc Eng Technol. 2016 Sep;7(3):191-209. doi: 10.1007/s13239-016-0270-1. Epub 2016 Jun 27.

PMID:
27350137
38.

Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text.

Bravo À, Li TS, Su AI, Good BM, Furlong LI.

Database (Oxford). 2016 Jun 15;2016. pii: baw094. doi: 10.1093/database/baw094. Print 2016.

39.

Transcriptional profiling of the ovine abomasal lymph node reveals a role for timing of the immune response in gastrointestinal nematode resistance.

McRae KM, Good B, Hanrahan JP, McCabe MS, Cormican P, Sweeney T, O'Connell MJ, Keane OM.

Vet Parasitol. 2016 Jul 15;224:96-108. doi: 10.1016/j.vetpar.2016.05.014. Epub 2016 May 17.

40.

The association between duration of untreated psychosis in first psychotic episode patients and help seeking behaviors in Jogjakarta, Indonesia.

Marchira CR, Supriyanto I, Subandi, Soewadi, Good BJ.

Int J Cult Ment Health. 2016 Apr 2;9(2):120-126. Epub 2015 Nov 5.

41.

Gene Wiki Reviews-Raising the quality and accessibility of information about the human genome.

Tsueng G, Good BM, Ping P, Golemis E, Hanukoglu I, van Wijnen AJ, Su AI.

Gene. 2016 Nov 5;592(2):235-8. doi: 10.1016/j.gene.2016.04.053. Epub 2016 May 2.

42.

Branch: an interactive, web-based tool for testing hypotheses and developing predictive models.

Gangavarapu K, Babji V, Meißner T, Su AI, Good BM.

Bioinformatics. 2016 Jul 1;32(13):2072-2074. doi: 10.1093/bioinformatics/btw117. Epub 2016 Mar 7.

43.

A crowdsourcing workflow for extracting chemical-induced disease relations from free text.

Li TS, Bravo À, Furlong LI, Good BM, Su AI.

Database (Oxford). 2016 Apr 17;2016. pii: baw051. doi: 10.1093/database/baw051. Print 2016.

44.

Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes.

Putman TE, Burgstaller-Muehlbacher S, Waagmeester A, Wu C, Su AI, Good BM.

Database (Oxford). 2016 Mar 28;2016. pii: baw028. doi: 10.1093/database/baw028. Print 2016.

45.

Wikidata as a semantic framework for the Gene Wiki initiative.

Burgstaller-Muehlbacher S, Waagmeester A, Mitraka E, Turner J, Putman T, Leong J, Naik C, Pavlidis P, Schriml L, Good BM, Su AI.

Database (Oxford). 2016 Mar 17;2016. pii: baw015. doi: 10.1093/database/baw015. Print 2016.

46.

The Implicitome: A Resource for Rationalizing Gene-Disease Associations.

Hettne KM, Thompson M, van Haagen HH, van der Horst E, Kaliyaperumal R, Mina E, Tatum Z, Laros JF, van Mulligen EM, Schuemie M, Aten E, Li TS, Bruskiewich R, Good BM, Su AI, Kors JA, den Dunnen J, van Ommen GJ, Roos M, 't Hoen PA, Mons B, Schultes EA.

PLoS One. 2016 Feb 26;11(2):e0149621. doi: 10.1371/journal.pone.0149621. eCollection 2016.

47.

Citizen Science for Mining the Biomedical Literature.

Tsueng G, Nanis SM, Fouquier J, Good BM, Su AI.

Citiz Sci. 2016;1(2). pii: 14. doi: 10.5334/cstp.56. Epub 2016 Dec 31.

48.

Continuous and Pulsatile Pediatric Ventricular Assist Device Hemodynamics with a Viscoelastic Blood Model.

Good BC, Deutsch S, Manning KB.

Cardiovasc Eng Technol. 2016 Mar;7(1):23-43. doi: 10.1007/s13239-015-0252-8. Epub 2015 Dec 7. Erratum in: Cardiovasc Eng Technol. 2016 Sep;7(3):305-7.

49.

Characterisation of ivermectin and multi-drug resistance in two field isolates of Teladorsagia circumcincta from Irish sheep flocks.

Keegan JD, Keane OM, Farrell L, Byrne W, De Waal T, Good B.

Vet Parasitol Reg Stud Reports. 2015 Dec;1-2:3-9. doi: 10.1016/j.vprsr.2016.03.005. Epub 2016 Apr 7.

PMID:
31018405
50.

Response letter.

Bloemhoff Y, Forbes A, Good B, Morgan E, Mulcahy G, Strube C, Sayers R.

Vet Parasitol. 2015 Nov 30;214(1-2):228. doi: 10.1016/j.vetpar.2015.09.007. Epub 2015 Oct 22. No abstract available.

PMID:
26518642

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