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Items: 20

1.

Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools.

Gonzalez-Galarza FF, McCabe A, Santos EJMD, Jones J, Takeshita L, Ortega-Rivera ND, Cid-Pavon GMD, Ramsbottom K, Ghattaoraya G, Alfirevic A, Middleton D, Jones AR.

Nucleic Acids Res. 2019 Nov 13. pii: gkz1029. doi: 10.1093/nar/gkz1029. [Epub ahead of print]

PMID:
31722398
2.

Imbalance of Genes Encoding Natural Killer Immunoglobulin-Like Receptors and Human Leukocyte Antigen in Patients With Biliary Cancer.

Cornillet M, Jansson H, Schaffer M, Hertwig L, Berglin L, Zimmer CL, Johansson H, Ellis E, Isaksson B, Gonzalez-Galarza FF, Middleton D, Malmberg KJ, Sparrelid E, Björkström NK.

Gastroenterology. 2019 Oct;157(4):1067-1080.e9. doi: 10.1053/j.gastro.2019.06.023. Epub 2019 Jun 21.

PMID:
31229495
3.

Cartilage Oligomeric Matrix Protein Levels in Type 2 Diabetes Associated with Primary Knee Osteoarthritis Patients.

Arellano Perez Vertti RD, Aguilar Muñiz LS, Morán Martínez J, González Galarza FF, Arguello Astorga R.

Genet Test Mol Biomarkers. 2019 Jan;23(1):16-22. doi: 10.1089/gtmb.2018.0184. Epub 2018 Dec 8.

PMID:
30526057
4.

Allele Frequency Net Database.

Gonzalez-Galarza FF, McCabe A, Melo Dos Santos EJ, Takeshita L, Ghattaoraya G, Jones AR, Middleton D.

Methods Mol Biol. 2018;1802:49-62. doi: 10.1007/978-1-4939-8546-3_4.

PMID:
29858801
5.

[Type 2 diabetes mellitus and primary knee osteoarthritis].

Arellano-Pérez Vertti RD, Aguilar-Muñiz LS, González-Galarza FF, Argüello-Astorga R, Moran-Martínez J.

Salud Publica Mex. 2017 Jul-Aug;59(4):492-493. doi: 10.21149/8366. Spanish. No abstract available.

PMID:
29211273
6.

A web resource for mining HLA associations with adverse drug reactions: HLA-ADR.

Ghattaoraya GS, Dundar Y, González-Galarza FF, Maia MH, Santos EJ, da Silva AL, McCabe A, Middleton D, Alfirevic A, Dickson R, Jones AR.

Database (Oxford). 2016 May 17;2016. pii: baw069. doi: 10.1093/database/baw069. Print 2016.

7.

Allele Frequencies Net Database: Improvements for storage of individual genotypes and analysis of existing data.

Santos EJMD, McCabe A, Gonzalez-Galarza FF, Jones AR, Middleton D.

Hum Immunol. 2016 Mar;77(3):238-248. doi: 10.1016/j.humimm.2015.11.013. Epub 2015 Nov 14.

PMID:
26585775
8.

A bioinformatics tool for epitope-based vaccine design that accounts for human ethnic diversity: application to emerging infectious diseases.

Oyarzun P, Ellis JJ, Gonzalez-Galarza FF, Jones AR, Middleton D, Boden M, Kobe B.

Vaccine. 2015 Mar 3;33(10):1267-73. doi: 10.1016/j.vaccine.2015.01.040. Epub 2015 Jan 25.

PMID:
25629524
9.

Allele frequencies database.

Takeshita LY, Jones AR, Gonzalez-Galarza FF, Middleton D.

Transfus Med Hemother. 2014 Oct;41(5):352-5. doi: 10.1159/000368056. Review.

10.

Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations.

González-Galarza FF, Takeshita LY, Santos EJ, Kempson F, Maia MH, da Silva AL, Teles e Silva AL, Ghattaoraya GS, Alfirevic A, Jones AR, Middleton D.

Nucleic Acids Res. 2015 Jan;43(Database issue):D784-8. doi: 10.1093/nar/gku1166. Epub 2014 Nov 20.

11.

Numerical compression schemes for proteomics mass spectrometry data.

Teleman J, Dowsey AW, Gonzalez-Galarza FF, Perkins S, Pratt B, Röst HL, Malmström L, Malmström J, Jones AR, Deutsch EW, Levander F.

Mol Cell Proteomics. 2014 Jun;13(6):1537-42. doi: 10.1074/mcp.O114.037879. Epub 2014 Mar 27.

12.

The mzQuantML data standard for mass spectrometry-based quantitative studies in proteomics.

Walzer M, Qi D, Mayer G, Uszkoreit J, Eisenacher M, Sachsenberg T, Gonzalez-Galarza FF, Fan J, Bessant C, Deutsch EW, Reisinger F, Vizcaíno JA, Medina-Aunon JA, Albar JP, Kohlbacher O, Jones AR.

Mol Cell Proteomics. 2013 Aug;12(8):2332-40. doi: 10.1074/mcp.O113.028506. Epub 2013 Apr 18.

13.

A database for curating the associations between killer cell immunoglobulin-like receptors and diseases in worldwide populations.

Takeshita LY, Gonzalez-Galarza FF, dos Santos EJ, Maia MH, Rahman MM, Zain SM, Middleton D, Jones AR.

Database (Oxford). 2013 Apr 12;2013:bat021. doi: 10.1093/database/bat021. Print 2013.

14.

A tutorial for software development in quantitative proteomics using PSI standard formats.

Gonzalez-Galarza FF, Qi D, Fan J, Bessant C, Jones AR.

Biochim Biophys Acta. 2014 Jan;1844(1 Pt A):88-97. doi: 10.1016/j.bbapap.2013.04.004. Epub 2013 Apr 12. Review.

15.

16(th) IHIW: population global distribution of killer immunoglobulin-like receptor (KIR) and ligands.

Hollenbach JA, Augusto DG, Alaez C, Bubnova L, Fae I, Fischer G, Gonzalez-Galarza FF, Gorodezky C, Karabon L, Kusnierczyk P, Noble J, Rickards O, Roberts C, Schaffer M, Shi L, Tavoularis S, Trachtenberg E, Yao Y, Middleton D.

Int J Immunogenet. 2013 Feb;40(1):39-45. doi: 10.1111/iji.12028. Epub 2012 Dec 26.

16.

16(th) IHIW: extending the number of resources and bioinformatics analysis for the investigation of HLA rare alleles.

Gonzalez-Galarza FF, Mack SJ, Hollenbach J, Fernandez-Vina M, Setterholm M, Kempenich J, Marsh SG, Jones AR, Middleton D; HLA Rare Allele Consortium.

Int J Immunogenet. 2013 Feb;40(1):60-5. doi: 10.1111/iji.12030. Epub 2012 Dec 1.

PMID:
23198982
17.

Library of Apicomplexan Metabolic Pathways: a manually curated database for metabolic pathways of apicomplexan parasites.

Shanmugasundram A, Gonzalez-Galarza FF, Wastling JM, Vasieva O, Jones AR.

Nucleic Acids Res. 2013 Jan;41(Database issue):D706-13. doi: 10.1093/nar/gks1139. Epub 2012 Nov 27.

18.

A software toolkit and interface for performing stable isotope labeling and top3 quantification using Progenesis LC-MS.

Qi D, Brownridge P, Xia D, Mackay K, Gonzalez-Galarza FF, Kenyani J, Harman V, Beynon RJ, Jones AR.

OMICS. 2012 Sep;16(9):489-95. doi: 10.1089/omi.2012.0042. Epub 2012 Aug 13.

19.

A critical appraisal of techniques, software packages, and standards for quantitative proteomic analysis.

Gonzalez-Galarza FF, Lawless C, Hubbard SJ, Fan J, Bessant C, Hermjakob H, Jones AR.

OMICS. 2012 Sep;16(9):431-42. doi: 10.1089/omi.2012.0022. Epub 2012 Jul 17.

20.

Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations.

Gonzalez-Galarza FF, Christmas S, Middleton D, Jones AR.

Nucleic Acids Res. 2011 Jan;39(Database issue):D913-9. doi: 10.1093/nar/gkq1128. Epub 2010 Nov 9.

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