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Items: 1 to 50 of 66

1.

Mercury exposure, risk factors, and perceptions among women of childbearing age in an artisanal gold mining region of the Peruvian Amazon.

Gonzalez DJX, Arain A, Fernandez LE.

Environ Res. 2019 Oct 4;179(Pt A):108786. doi: 10.1016/j.envres.2019.108786. [Epub ahead of print]

PMID:
31605870
2.

AssessORF: combining evolutionary conservation and proteomics to assess prokaryotic gene predictions.

Korandla DR, Wozniak JM, Campeau A, Gonzalez DJ, Wright ES.

Bioinformatics. 2019 Sep 18. pii: btz714. doi: 10.1093/bioinformatics/btz714. [Epub ahead of print]

PMID:
31532487
3.

Functional and Proteomic Analysis of Streptococcus pyogenes Virulence Upon Loss of Its Native Cas9 Nuclease.

Gao NJ, Al-Bassam MM, Poudel S, Wozniak JM, Gonzalez DJ, Olson J, Zengler K, Nizet V, Valderrama JA.

Front Microbiol. 2019 Aug 22;10:1967. doi: 10.3389/fmicb.2019.01967. eCollection 2019.

4.

Associations of the Fecal Microbial Proteome Composition and Proneness to Diet-induced Obesity.

Tran HQ, Mills RH, Peters NV, Holder MK, de Vries GJ, Knight R, Chassaing B, Gonzalez DJ, Gewirtz AT.

Mol Cell Proteomics. 2019 Sep;18(9):1864-1879. doi: 10.1074/mcp.RA119.001623. Epub 2019 Jul 1.

5.

PTMphinder: an R package for PTM site localization and motif extraction from proteomic datasets.

Wozniak JM, Gonzalez DJ.

PeerJ. 2019 Jun 4;7:e7046. doi: 10.7717/peerj.7046. eCollection 2019.

6.

Multiantigenic Nanotoxoids for Antivirulence Vaccination against Antibiotic-Resistant Gram-Negative Bacteria.

Wei X, Ran D, Campeau A, Xiao C, Zhou J, Dehaini D, Jiang Y, Kroll AV, Zhang Q, Gao W, Gonzalez DJ, Fang RH, Zhang L.

Nano Lett. 2019 Jul 10;19(7):4760-4769. doi: 10.1021/acs.nanolett.9b01844. Epub 2019 Jun 11.

PMID:
31184899
7.

Evaluating Metagenomic Prediction of the Metaproteome in a 4.5-Year Study of a Patient with Crohn's Disease.

Mills RH, Vázquez-Baeza Y, Zhu Q, Jiang L, Gaffney J, Humphrey G, Smarr L, Knight R, Gonzalez DJ.

mSystems. 2019 Feb 12;4(1). pii: e00337-18. doi: 10.1128/mSystems.00337-18. eCollection 2019 Jan-Feb.

8.

Neutrophilic proteolysis in the cystic fibrosis lung correlates with a pathogenic microbiome.

Quinn RA, Adem S, Mills RH, Comstock W, DeRight Goldasich L, Humphrey G, Aksenov AA, Melnik AV, da Silva R, Ackermann G, Bandeira N, Gonzalez DJ, Conrad D, O'Donoghue AJ, Knight R, Dorrestein PC.

Microbiome. 2019 Feb 13;7(1):23. doi: 10.1186/s40168-019-0636-3.

9.

Quantitative Multiplex Substrate Profiling of Peptidases by Mass Spectrometry.

Lapek JD Jr, Jiang Z, Wozniak JM, Arutyunova E, Wang SC, Lemieux MJ, Gonzalez DJ, O'Donoghue AJ.

Mol Cell Proteomics. 2019 May;18(5):968-981. doi: 10.1074/mcp.TIR118.001099. Epub 2019 Jan 31.

PMID:
30705125
10.

Essential metabolism for a minimal cell.

Breuer M, Earnest TM, Merryman C, Wise KS, Sun L, Lynott MR, Hutchison CA, Smith HO, Lapek JD, Gonzalez DJ, de Crécy-Lagard V, Haas D, Hanson AD, Labhsetwar P, Glass JI, Luthey-Schulten Z.

Elife. 2019 Jan 18;8. pii: e36842. doi: 10.7554/eLife.36842.

11.

Identification of Common and Rare Genetic Variation Associated With Plasma Protein Levels Using Whole-Exome Sequencing and Mass Spectrometry.

Solomon T, Lapek JD Jr, Jensen SB, Greenwald WW, Hindberg K, Matsui H, Latysheva N, Braekken SK, Gonzalez DJ, Frazer KA, Smith EN, Hansen JB.

Circ Genom Precis Med. 2018 Dec;11(12):e002170. doi: 10.1161/CIRCGEN.118.002170.

PMID:
30562114
12.

Optimization of carbon and energy utilization through differential translational efficiency.

Al-Bassam MM, Kim JN, Zaramela LS, Kellman BP, Zuniga C, Wozniak JM, Gonzalez DJ, Zengler K.

Nat Commun. 2018 Oct 26;9(1):4474. doi: 10.1038/s41467-018-06993-6.

13.

Dysregulated Microbial Fermentation of Soluble Fiber Induces Cholestatic Liver Cancer.

Singh V, Yeoh BS, Chassaing B, Xiao X, Saha P, Aguilera Olvera R, Lapek JD Jr, Zhang L, Wang WB, Hao S, Flythe MD, Gonzalez DJ, Cani PD, Conejo-Garcia JR, Xiong N, Kennett MJ, Joe B, Patterson AD, Gewirtz AT, Vijay-Kumar M.

Cell. 2018 Oct 18;175(3):679-694.e22. doi: 10.1016/j.cell.2018.09.004.

14.

Correction to: Mitochondrial H+-ATP synthase in human skeletal muscle: contribution to dyslipidaemia and insulin resistance.

Formentini L, Ryan AJ, Gálvez-Santisteban M, Carter L, Taub P, Lapek JD Jr, Gonzalez DJ, Villarreal F, Ciaraldi TP, Cuezva JM, Henry RR.

Diabetologia. 2018 Dec;61(12):2674. doi: 10.1007/s00125-018-4747-3.

PMID:
30324489
15.

A Tyrosine Switch on NEDD4-2 E3 Ligase Transmits GPCR Inflammatory Signaling.

Grimsey NJ, Narala R, Rada CC, Mehta S, Stephens BS, Kufareva I, Lapek J, Gonzalez DJ, Handel TM, Zhang J, Trejo J.

Cell Rep. 2018 Sep 18;24(12):3312-3323.e5. doi: 10.1016/j.celrep.2018.08.061.

16.

Discovery of novel plasma biomarkers for future incident venous thromboembolism by untargeted synchronous precursor selection mass spectrometry proteomics.

Jensen SB, Hindberg K, Solomon T, Smith EN, Lapek JD Jr, Gonzalez DJ, Latysheva N, Frazer KA, Braekkan SK, Hansen JB.

J Thromb Haemost. 2018 Sep;16(9):1763-1774. doi: 10.1111/jth.14220. Epub 2018 Aug 6.

17.

Pseudopodium-enriched atypical kinase 1 mediates angiogenesis by modulating GATA2-dependent VEGFR2 transcription.

Wang H, Lapek J, Fujimura K, Strnadel J, Liu B, Gonzalez DJ, Zhang W, Watson F, Yu V, Liu C, Melo CM, Miller YI, Elliott KC, Cheresh DA, Klemke RL.

Cell Discov. 2018 May 29;4:26. doi: 10.1038/s41421-018-0024-3. eCollection 2018.

18.

Group B Streptococcus Biofilm Regulatory Protein A Contributes to Bacterial Physiology and Innate Immune Resistance.

Patras KA, Derieux J, Al-Bassam MM, Adiletta N, Vrbanac A, Lapek JD, Zengler K, Gonzalez DJ, Nizet V.

J Infect Dis. 2018 Oct 5;218(10):1641-1652. doi: 10.1093/infdis/jiy341.

19.

Defining Host Responses during Systemic Bacterial Infection through Construction of a Murine Organ Proteome Atlas.

Lapek JD Jr, Mills RH, Wozniak JM, Campeau A, Fang RH, Wei X, van de Groep K, Perez-Lopez A, van Sorge NM, Raffatellu M, Knight R, Zhang L, Gonzalez DJ.

Cell Syst. 2018 May 23;6(5):579-592.e4. doi: 10.1016/j.cels.2018.04.010. Epub 2018 May 16.

20.

Staphylococcus aureus Membrane-Derived Vesicles Promote Bacterial Virulence and Confer Protective Immunity in Murine Infection Models.

Askarian F, Lapek JD Jr, Dongre M, Tsai CM, Kumaraswamy M, Kousha A, Valderrama JA, Ludviksen JA, Cavanagh JP, Uchiyama S, Mollnes TE, Gonzalez DJ, Wai SN, Nizet V, Johannessen M.

Front Microbiol. 2018 Feb 20;9:262. doi: 10.3389/fmicb.2018.00262. eCollection 2018.

21.

Identification of the S-transferase like superfamily bacillithiol transferases encoded by Bacillus subtilis.

Perera VR, Lapek JD Jr, Newton GL, Gonzalez DJ, Pogliano K.

PLoS One. 2018 Feb 16;13(2):e0192977. doi: 10.1371/journal.pone.0192977. eCollection 2018.

22.

Context-Dependent and Disease-Specific Diversity in Protein Interactions within Stress Granules.

Markmiller S, Soltanieh S, Server KL, Mak R, Jin W, Fang MY, Luo EC, Krach F, Yang D, Sen A, Fulzele A, Wozniak JM, Gonzalez DJ, Kankel MW, Gao FB, Bennett EJ, Lécuyer E, Yeo GW.

Cell. 2018 Jan 25;172(3):590-604.e13. doi: 10.1016/j.cell.2017.12.032.

23.

Biomimetic Virulomics for Capture and Identification of Cell-Type Specific Effector Proteins.

Lapek JD Jr, Fang RH, Wei X, Li P, Wang B, Zhang L, Gonzalez DJ.

ACS Nano. 2017 Dec 26;11(12):11831-11838. doi: 10.1021/acsnano.7b02650. Epub 2017 Sep 20.

PMID:
28892626
24.

Phosphorylation of serine96 of histidine-rich calcium-binding protein by the Fam20C kinase functions to prevent cardiac arrhythmia.

Pollak AJ, Haghighi K, Kunduri S, Arvanitis DA, Bidwell PA, Liu GS, Singh VP, Gonzalez DJ, Sanoudou D, Wiley SE, Dixon JE, Kranias EG.

Proc Natl Acad Sci U S A. 2017 Aug 22;114(34):9098-9103. doi: 10.1073/pnas.1706441114. Epub 2017 Aug 7.

25.

Mitochondrial H+-ATP synthase in human skeletal muscle: contribution to dyslipidaemia and insulin resistance.

Formentini L, Ryan AJ, Gálvez-Santisteban M, Carter L, Taub P, Lapek JD Jr, Gonzalez DJ, Villarreal F, Ciaraldi TP, Cuezva JM, Henry RR.

Diabetologia. 2017 Oct;60(10):2052-2065. doi: 10.1007/s00125-017-4379-z. Epub 2017 Aug 2. Erratum in: Diabetologia. 2018 Oct 15;:.

26.

Quantitative Temporal Viromics of an Inducible HIV-1 Model Yields Insight to Global Host Targets and Phospho-Dynamics Associated with Protein Vpr.

Lapek JD Jr, Lewinski MK, Wozniak JM, Guatelli J, Gonzalez DJ.

Mol Cell Proteomics. 2017 Aug;16(8):1447-1461. doi: 10.1074/mcp.M116.066019. Epub 2017 Jun 12.

27.

Ab initio study of several static and dynamic properties of bulk liquid Ni near melting.

Del Rio BG, González LE, González DJ.

J Chem Phys. 2017 Jan 21;146(3):034501. doi: 10.1063/1.4973803.

PMID:
28109223
28.

Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking.

Wang M, Carver JJ, Phelan VV, Sanchez LM, Garg N, Peng Y, Nguyen DD, Watrous J, Kapono CA, Luzzatto-Knaan T, Porto C, Bouslimani A, Melnik AV, Meehan MJ, Liu WT, Crüsemann M, Boudreau PD, Esquenazi E, Sandoval-Calderón M, Kersten RD, Pace LA, Quinn RA, Duncan KR, Hsu CC, Floros DJ, Gavilan RG, Kleigrewe K, Northen T, Dutton RJ, Parrot D, Carlson EE, Aigle B, Michelsen CF, Jelsbak L, Sohlenkamp C, Pevzner P, Edlund A, McLean J, Piel J, Murphy BT, Gerwick L, Liaw CC, Yang YL, Humpf HU, Maansson M, Keyzers RA, Sims AC, Johnson AR, Sidebottom AM, Sedio BE, Klitgaard A, Larson CB, P CAB, Torres-Mendoza D, Gonzalez DJ, Silva DB, Marques LM, Demarque DP, Pociute E, O'Neill EC, Briand E, Helfrich EJN, Granatosky EA, Glukhov E, Ryffel F, Houson H, Mohimani H, Kharbush JJ, Zeng Y, Vorholt JA, Kurita KL, Charusanti P, McPhail KL, Nielsen KF, Vuong L, Elfeki M, Traxler MF, Engene N, Koyama N, Vining OB, Baric R, Silva RR, Mascuch SJ, Tomasi S, Jenkins S, Macherla V, Hoffman T, Agarwal V, Williams PG, Dai J, Neupane R, Gurr J, Rodríguez AMC, Lamsa A, Zhang C, Dorrestein K, Duggan BM, Almaliti J, Allard PM, Phapale P, Nothias LF, Alexandrov T, Litaudon M, Wolfender JL, Kyle JE, Metz TO, Peryea T, Nguyen DT, VanLeer D, Shinn P, Jadhav A, Müller R, Waters KM, Shi W, Liu X, Zhang L, Knight R, Jensen PR, Palsson BO, Pogliano K, Linington RG, Gutiérrez M, Lopes NP, Gerwick WH, Moore BS, Dorrestein PC, Bandeira N.

Nat Biotechnol. 2016 Aug 9;34(8):828-837. doi: 10.1038/nbt.3597.

29.

Pressure-induced changes in structural and dynamic properties of liquid Fe close to the melting line. An ab initio study.

Marqués M, González LE, González DJ.

J Phys Condens Matter. 2016 Feb 24;28(7):075101. doi: 10.1088/0953-8984/28/7/075101. Epub 2016 Jan 26.

PMID:
26811899
30.

Tamoxifen augments the innate immune function of neutrophils through modulation of intracellular ceramide.

Corriden R, Hollands A, Olson J, Derieux J, Lopez J, Chang JT, Gonzalez DJ, Nizet V.

Nat Commun. 2015 Oct 13;6:8369. doi: 10.1038/ncomms9369.

31.

N-terminal ArgD peptides from the classical Staphylococcus aureus Agr system have cytotoxic and proinflammatory activities.

Gonzalez DJ, Corriden R, Akong-Moore K, Olson J, Dorrestein PC, Nizet V.

Chem Biol. 2014 Nov 20;21(11):1457-62. doi: 10.1016/j.chembiol.2014.09.015.

32.

Dynamic regulation of FGF23 by Fam20C phosphorylation, GalNAc-T3 glycosylation, and furin proteolysis.

Tagliabracci VS, Engel JL, Wiley SE, Xiao J, Gonzalez DJ, Nidumanda Appaiah H, Koller A, Nizet V, White KE, Dixon JE.

Proc Natl Acad Sci U S A. 2014 Apr 15;111(15):5520-5. doi: 10.1073/pnas.1402218111. Epub 2014 Mar 26.

33.

Phenol soluble modulin (PSM) variants of community-associated methicillin-resistant Staphylococcus aureus (MRSA) captured using mass spectrometry-based molecular networking.

Gonzalez DJ, Vuong L, Gonzalez IS, Keller N, McGrosso D, Hwang JH, Hung J, Zinkernagel A, Dixon JE, Dorrestein PC, Nizet V.

Mol Cell Proteomics. 2014 May;13(5):1262-72. doi: 10.1074/mcp.M113.031336. Epub 2014 Feb 24.

34.

Direct cloning and refactoring of a silent lipopeptide biosynthetic gene cluster yields the antibiotic taromycin A.

Yamanaka K, Reynolds KA, Kersten RD, Ryan KS, Gonzalez DJ, Nizet V, Dorrestein PC, Moore BS.

Proc Natl Acad Sci U S A. 2014 Feb 4;111(5):1957-62. doi: 10.1073/pnas.1319584111. Epub 2014 Jan 21.

35.

Glycogenomics as a mass spectrometry-guided genome-mining method for microbial glycosylated molecules.

Kersten RD, Ziemert N, Gonzalez DJ, Duggan BM, Nizet V, Dorrestein PC, Moore BS.

Proc Natl Acad Sci U S A. 2013 Nov 19;110(47):E4407-16. doi: 10.1073/pnas.1315492110. Epub 2013 Nov 4.

36.

How to Make a Dolphin: Molecular Signature of Positive Selection in Cetacean Genome.

Nery MF, González DJ, Opazo JC.

PLoS One. 2013 Jun 19;8(6):e65491. doi: 10.1371/journal.pone.0065491. Print 2013.

37.

An ab initio study of the structure and dynamics of bulk liquid Cd and its liquid-vapor interface.

Calderín L, González LE, González DJ.

J Phys Condens Matter. 2013 Feb 13;25(6):065102. doi: 10.1088/0953-8984/25/6/065102. Epub 2013 Jan 18.

PMID:
23334159
38.

Methicillin-resistant Staphylococcus aureus bacterial nitric-oxide synthase affects antibiotic sensitivity and skin abscess development.

van Sorge NM, Beasley FC, Gusarov I, Gonzalez DJ, von Köckritz-Blickwede M, Anik S, Borkowski AW, Dorrestein PC, Nudler E, Nizet V.

J Biol Chem. 2013 Mar 1;288(9):6417-26. doi: 10.1074/jbc.M112.448738. Epub 2013 Jan 15.

39.

Observing the invisible through imaging mass spectrometry, a window into the metabolic exchange patterns of microbes.

Gonzalez DJ, Xu Y, Yang YL, Esquenazi E, Liu WT, Edlund A, Duong T, Du L, Molnár I, Gerwick WH, Jensen PR, Fischbach M, Liaw CC, Straight P, Nizet V, Dorrestein PC.

J Proteomics. 2012 Aug 30;75(16):5069-5076. doi: 10.1016/j.jprot.2012.05.036. Epub 2012 May 26.

40.

Resolution of the laurasiatherian phylogeny: evidence from genomic data.

Nery MF, González DJ, Hoffmann FG, Opazo JC.

Mol Phylogenet Evol. 2012 Sep;64(3):685-9. doi: 10.1016/j.ympev.2012.04.012. Epub 2012 Apr 24.

PMID:
22560954
41.

Novel phenol-soluble modulin derivatives in community-associated methicillin-resistant Staphylococcus aureus identified through imaging mass spectrometry.

Gonzalez DJ, Okumura CY, Hollands A, Kersten R, Akong-Moore K, Pence MA, Malone CL, Derieux J, Moore BS, Horswill AR, Dixon JE, Dorrestein PC, Nizet V.

J Biol Chem. 2012 Apr 20;287(17):13889-98. doi: 10.1074/jbc.M112.349860. Epub 2012 Feb 27.

42.

Néstor-Guillermo progeria syndrome: a novel premature aging condition with early onset and chronic development caused by BANF1 mutations.

Cabanillas R, Cadiñanos J, Villameytide JA, Pérez M, Longo J, Richard JM, Alvarez R, Durán NS, Illán R, González DJ, López-Otín C.

Am J Med Genet A. 2011 Nov;155A(11):2617-25. doi: 10.1002/ajmg.a.34249. Epub 2011 Sep 19.

PMID:
21932319
43.

Static, dynamic and electronic properties of expanded fluid mercury in the metal-nonmetal transition range. An ab initio study.

Calderín L, González LE, González DJ.

J Phys Condens Matter. 2011 Sep 21;23(37):375105. doi: 10.1088/0953-8984/23/37/375105. Epub 2011 Aug 31.

PMID:
21878714
44.

Microbial competition between Bacillus subtilis and Staphylococcus aureus monitored by imaging mass spectrometry.

Gonzalez DJ, Haste NM, Hollands A, Fleming TC, Hamby M, Pogliano K, Nizet V, Dorrestein PC.

Microbiology. 2011 Sep;157(Pt 9):2485-92. doi: 10.1099/mic.0.048736-0. Epub 2011 Jun 30.

45.

The chronic administration of cerebrolysin induces plastic changes in the prefrontal cortex and dentate gyrus in aged mice.

Juárez I, González DJ, Mena R, Flores G.

Synapse. 2011 Nov;65(11):1128-35. doi: 10.1002/syn.20950. Epub 2011 May 17.

PMID:
21544867
46.

Biofunctional activity of tortillas and bars enhanced with nopal. Preliminary assessment of functional effect after intake on the oxidative status in healthy volunteers.

Guevara-Arauza JC, Ornelas Paz Jde J, Mendoza SR, Guerra RE, Paz Maldonado LM, González DJ.

Chem Cent J. 2011 Mar 3;5(1):10. doi: 10.1186/1752-153X-5-10.

47.

Clostridiolysin S, a post-translationally modified biotoxin from Clostridium botulinum.

Gonzalez DJ, Lee SW, Hensler ME, Markley AL, Dahesh S, Mitchell DA, Bandeira N, Nizet V, Dixon JE, Dorrestein PC.

J Biol Chem. 2010 Sep 3;285(36):28220-8. doi: 10.1074/jbc.M110.118554. Epub 2010 Jun 25.

48.

Ab initio molecular dynamics study of the static, dynamic, and electronic properties of liquid mercury at room temperature.

Calderín L, González LE, González DJ.

J Chem Phys. 2009 May 21;130(19):194505. doi: 10.1063/1.3137582.

PMID:
19466841
49.

Transverse acoustic excitations in liquid Ga.

Hosokawa S, Inui M, Kajihara Y, Matsuda K, Ichitsubo T, Pilgrim WC, Sinn H, González LE, González DJ, Tsutsui S, Baron AQ.

Phys Rev Lett. 2009 Mar 13;102(10):105502. Epub 2009 Mar 13.

PMID:
19392123
50.

Structure and motion at the liquid-vapor interface of some interalkali binary alloys: An orbital-free ab initio study.

González DJ, González LE.

J Chem Phys. 2009 Mar 21;130(11):114703. doi: 10.1063/1.3089228.

PMID:
19317551

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