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Items: 1 to 50 of 169

1.

Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex.

Chiner-Oms Á, Berney M, Boinett C, González-Candelas F, Young DB, Gagneux S, Jacobs WR Jr, Parkhill J, Cortes T, Comas I.

Nat Commun. 2019 Sep 5;10(1):3994. doi: 10.1038/s41467-019-11948-6.

2.

Corrigendum: Phylogeny of Vibrio vulnificus From the Analysis of the Core-Genome: Implications for Intra-Species Taxonomy.

Roig FJ, González-Candelas F, Sanjuán E, Fouz B, Feil EJ, Llorens C, Baker-Austin C, Oliver JD, Danin-Poleg Y, Gibas CJ, Kashi Y, Gulig PA, Morrison SS, Amaro C.

Front Microbiol. 2019 Aug 21;10:1904. doi: 10.3389/fmicb.2019.01904. eCollection 2019.

3.

Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex.

Chiner-Oms Á, Sánchez-Busó L, Corander J, Gagneux S, Harris SR, Young D, González-Candelas F, Comas I.

Sci Adv. 2019 Jun 12;5(6):eaaw3307. doi: 10.1126/sciadv.aaw3307. eCollection 2019 Jun.

4.

Whole-genome sequencing of Neisseria gonorrhoeae in a forensic transmission case.

Francés-Cuesta C, de la Caba I, Idigoras P, Fernández-Rodríguez A, Del Valle Pérez D, Marimón JM, González-Candelas F.

Forensic Sci Int Genet. 2019 Sep;42:141-146. doi: 10.1016/j.fsigen.2019.07.003. Epub 2019 Jul 8.

PMID:
31319352
5.

Characterization of New Recombinant Forms of HIV-1 From the Comunitat Valenciana (Spain) by Phylogenetic Incongruence.

Beamud B, Bracho MA, González-Candelas F.

Front Microbiol. 2019 May 22;10:1006. doi: 10.3389/fmicb.2019.01006. eCollection 2019.

6.

Phylogenomics of Enterococcus faecalis from wild birds: new insights into host-associated differences in core and accessory genomes of the species.

León-Sampedro R, Del Campo R, Rodriguez-Baños M, Lanza VF, Pozuelo MJ, Francés-Cuesta C, Tedim AP, Freitas AR, Novais C, Peixe L, Willems RJL, Corander J, González Candelas F, Baquero F, Coque TM.

Environ Microbiol. 2019 Aug;21(8):3046-3062. doi: 10.1111/1462-2920.14702. Epub 2019 Jul 4.

PMID:
31162871
7.

Hepatitis C virus intrinsic molecular determinants may contribute to the development of cholestatic hepatitis after liver transplantation.

Gambato M, Gregori J, Quer J, Koutsoudakis G, González P, Caro-Pérez N, García-Cehic D, García-González N, González-Candelas F, Esteban JI, Crespo G, Navasa M, Forns X, Pérez-Del-Pulgar S.

J Gen Virol. 2019 Jan;100(1):63-68. doi: 10.1099/jgv.0.001175. Epub 2018 Nov 19.

PMID:
30451649
8.

An unusually high substitution rate in transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides.

Domingo-Calap P, Schubert B, Joly M, Solis M, Untrau M, Carapito R, Georgel P, Caillard S, Fafi-Kremer S, Paul N, Kohlbacher O, González-Candelas F, Bahram S.

PLoS Pathog. 2018 Oct 18;14(10):e1007368. doi: 10.1371/journal.ppat.1007368. eCollection 2018 Oct.

9.

Emergence and dissemination of colistin-resistant Klebsiella pneumoniae isolates expressing OXA-48 plus CTX-M-15 in patients not previously treated with colistin in a Spanish university hospital.

Barragán-Prada H, Ruiz-Hueso P, Tedim AP, González-Candelas F, Galán JC, Cantón R, Morosini MI.

Diagn Microbiol Infect Dis. 2019 Feb;93(2):147-153. doi: 10.1016/j.diagmicrobio.2018.08.014. Epub 2018 Sep 8.

PMID:
30266401
10.

Genome-scale analysis of evolutionary rate and selection in a fast-expanding Spanish cluster of HIV-1 subtype F1.

Patiño-Galindo JÁ, Domínguez F, Cuevas MT, Delgado E, Sánchez M, Pérez-Álvarez L, Thomson MM, Sanjuán R, González-Candelas F, Cuevas JM.

Infect Genet Evol. 2018 Dec;66:43-47. doi: 10.1016/j.meegid.2018.09.008. Epub 2018 Sep 13.

PMID:
30219320
11.

Hepatitis C virus early kinetics and resistance-associated substitution dynamics during antiviral therapy with direct-acting antivirals.

Perpiñán E, Caro-Pérez N, García-González N, Gregori J, González P, Bartres C, Soria ME, Perales C, Lens S, Mariño Z, Londoño MC, Ariza X, Koutsoudakis G, Quer J, González-Candelas F, Forns X, Pérez-Del-Pulgar S.

J Viral Hepat. 2018 Dec;25(12):1515-1525. doi: 10.1111/jvh.12986. Epub 2018 Oct 4.

PMID:
30141252
12.

Molecular characterization of Treponema pallidum subsp. pallidum in Switzerland and France with a new multilocus sequence typing scheme.

Grillová L, Bawa T, Mikalová L, Gayet-Ageron A, Nieselt K, Strouhal M, Sednaoui P, Ferry T, Cavassini M, Lautenschlager S, Dutly F, Pla-Díaz M, Krützen M, González-Candelas F, Bagheri HC, Šmajs D, Arora N, Bosshard PP.

PLoS One. 2018 Jul 30;13(7):e0200773. doi: 10.1371/journal.pone.0200773. eCollection 2018.

13.

Molecular evolution methods to study HIV-1 epidemics.

Patiño-Galindo JÁ, González-Candelas F.

Future Virol. 2018 May;13(6):399-404. doi: 10.2217/fvl-2017-0159. Epub 2018 May 21. Review.

14.

The substitution rate of HIV-1 subtypes: a genomic approach.

Patiño-Galindo JÁ, González-Candelas F.

Virus Evol. 2017 Oct 20;3(2):vex029. doi: 10.1093/ve/vex029. eCollection 2017 Jul.

15.

Gene expression models based on a reference laboratory strain are poor predictors of Mycobacterium tuberculosis complex transcriptional diversity.

Chiner-Oms Á, González-Candelas F, Comas I.

Sci Rep. 2018 Feb 28;8(1):3813. doi: 10.1038/s41598-018-22237-5.

16.

Phylogeny of Vibrio vulnificus from the Analysis of the Core-Genome: Implications for Intra-Species Taxonomy.

Roig FJ, González-Candelas F, Sanjuán E, Fouz B, Feil EJ, Llorens C, Baker-Austin C, Oliver JD, Danin-Poleg Y, Gibas CJ, Kashi Y, Gulig PA, Morrison SS, Amaro C.

Front Microbiol. 2018 Jan 5;8:2613. doi: 10.3389/fmicb.2017.02613. eCollection 2017. Erratum in: Front Microbiol. 2019 Aug 21;10:1904.

17.

Reanalysis of Chinese Treponema pallidum samples: all Chinese samples cluster with SS14-like group of syphilis-causing treponemes.

Strouhal M, Oppelt J, Mikalová L, Arora N, Nieselt K, González-Candelas F, Šmajs D.

BMC Res Notes. 2018 Jan 11;11(1):16. doi: 10.1186/s13104-017-3106-7.

18.

The Effect of RNA Substitution Models on Viroid and RNA Virus Phylogenies.

Patiño-Galindo JÁ, González-Candelas F, Pybus OG.

Genome Biol Evol. 2018 Feb 1;10(2):657-666. doi: 10.1093/gbe/evx273.

19.

Genotypes and subgenotypes of hepatitis B virus circulating in an endemic area in Peru.

Ramírez-Soto MC, Bracho MA, González-Candelas F, Huichi-Atamari M.

Arch Virol. 2018 Jan;163(1):183-189. doi: 10.1007/s00705-017-3557-0. Epub 2017 Sep 25.

PMID:
28948365
20.

The molecular epidemiology of HIV-1 in the Comunidad Valenciana (Spain): analysis of transmission clusters.

Patiño-Galindo JÁ, Torres-Puente M, Bracho MA, Alastrué I, Juan A, Navarro D, Galindo MJ, Ocete D, Ortega E, Gimeno C, Belda J, Domínguez V, Moreno R, González-Candelas F.

Sci Rep. 2017 Sep 14;7(1):11584. doi: 10.1038/s41598-017-10286-1.

21.

The impact of virus population diversity on the dynamics of cytomegalovirus DNAemia in allogeneic stem cell transplant recipients.

Vinuesa V, Bracho MA, Albert E, Solano C, Torres-Puente M, Giménez E, González-Candelas F, Navarro D.

J Gen Virol. 2017 Oct;98(10):2530-2542. doi: 10.1099/jgv.0.000916. Epub 2017 Sep 6.

PMID:
28874227
22.

Phylogenetic analysis of an epidemic outbreak of acute hepatitis C in HIV-infected patients by ultra-deep pyrosequencing.

Caro-Pérez N, Martínez-Rebollar M, Gregori J, Quer J, González P, Gambato M, García-González N, González-Candelas F, Costa J, Esteban JI, Mallolas J, Forns X, Laguno M, Pérez-Del-Pulgar S.

J Clin Virol. 2017 Jul;92:42-47. doi: 10.1016/j.jcv.2017.05.008. Epub 2017 May 10.

PMID:
28521213
23.

Identification of a large, fast-expanding HIV-1 subtype B transmission cluster among MSM in Valencia, Spain.

Patiño-Galindo JÁ, Torres-Puente M, Bracho MA, Alastrué I, Juan A, Navarro D, Galindo MJ, Gimeno C, Ortega E, González-Candelas F.

PLoS One. 2017 Feb 2;12(2):e0171062. doi: 10.1371/journal.pone.0171062. eCollection 2017.

24.

Comparative analysis of variation and selection in the HCV genome.

Patiño-Galindo JÁ, González-Candelas F.

Infect Genet Evol. 2017 Apr;49:104-110. doi: 10.1016/j.meegid.2017.01.010. Epub 2017 Jan 10.

PMID:
28087495
25.

EvalMSA: A Program to Evaluate Multiple Sequence Alignments and Detect Outliers.

Chiner-Oms A, González-Candelas F.

Evol Bioinform Online. 2016 Nov 28;12:277-284. eCollection 2016.

26.

Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster.

Arora N, Schuenemann VJ, Jäger G, Peltzer A, Seitz A, Herbig A, Strouhal M, Grillová L, Sánchez-Busó L, Kühnert D, Bos KI, Davis LR, Mikalová L, Bruisten S, Komericki P, French P, Grant PR, Pando MA, Vaulet LG, Fermepin MR, Martinez A, Centurion Lara A, Giacani L, Norris SJ, Šmajs D, Bosshard PP, González-Candelas F, Nieselt K, Krause J, Bagheri HC.

Nat Microbiol. 2016 Dec 5;2:16245. doi: 10.1038/nmicrobiol.2016.245.

27.

Effect of Occupational Exposure on A(H1N1)pdm09 Infection and Hospitalization.

Pujol J, Godoy P, Soldevila N, Castilla J, González-Candelas F, Mayoral JM, Astray J, García S, Martín V, Tamames S, Delgado M, García ÁD; CIBERESP Cases and Controls in Pandemic Influenza Working Group.

Ann Occup Hyg. 2016 Oct;60(8):1009-19. doi: 10.1093/annhyg/mew044. Epub 2016 Jul 18.

PMID:
27432191
28.

Smoking may increase the risk of hospitalization due to influenza.

Godoy P, Castilla J, Mayoral JM, Delgado-Rodríguez M, Martín V, Astray J, Soldevila N, González-Candelas F, Castro A, Baricot M, Tamames S, Alonso J, Galán JC, Quintana JM, Pumarola T, Domínguez A; CIBERESP Cases and Controls in Pandemic Influenza Working Group, Spain.

Eur J Public Health. 2016 Oct;26(5):882-887. Epub 2016 Apr 16.

PMID:
27085194
29.

Transmission dynamics of HIV-1 subtype B in the Basque Country, Spain.

Patiño-Galindo JA, Thomson MM, Pérez-Álvarez L, Delgado E, Cuevas MT, Fernández-García A, Nájera R, Iribarren JA, Cilla G, López-Soria L, Lezaun MJ, Cisterna R, González-Candelas F; Group of HIV-1 Antiretroviral Resistance Studies in the Basque Country.

Infect Genet Evol. 2016 Jun;40:91-97. doi: 10.1016/j.meegid.2016.02.028. Epub 2016 Feb 26.

PMID:
26921800
30.

Comprehensive Screening for Naturally Occurring Hepatitis C Virus Resistance to Direct-Acting Antivirals in the NS3, NS5A, and NS5B Genes in Worldwide Isolates of Viral Genotypes 1 to 6.

Patiño-Galindo JÁ, Salvatierra K, González-Candelas F, López-Labrador FX.

Antimicrob Agents Chemother. 2016 Mar 25;60(4):2402-16. doi: 10.1128/AAC.02776-15. Print 2016 Apr.

31.

Genomic Investigation of a Legionellosis Outbreak in a Persistently Colonized Hotel.

Sánchez-Busó L, Guiral S, Crespi S, Moya V, Camaró ML, Olmos MP, Adrián F, Morera V, González-Morán F, Vanaclocha H, González-Candelas F.

Front Microbiol. 2016 Jan 21;6:1556. doi: 10.3389/fmicb.2015.01556. eCollection 2015.

32.

Comparison of body mass index (BMI) with the CUN-BAE body adiposity estimator in the prediction of hypertension and type 2 diabetes.

Martín V, Dávila-Batista V, Castilla J, Godoy P, Delgado-Rodríguez M, Soldevila N, Molina AJ, Fernandez-Villa T, Astray J, Castro A, González-Candelas F, Mayoral JM, Quintana JM, Domínguez A; CIBERESP Cases and Controls in Pandemic Influenza Working Group, Spain.

BMC Public Health. 2016 Jan 27;16:82. doi: 10.1186/s12889-016-2728-3.

33.

High Body Mass Index as a Risk Factor for Hospitalization Due to Influenza: A Case-Control Study.

Martín V, Castilla J, Godoy P, Delgado-Rodríguez M, Soldevila N, Fernández-Villa T, Molina AJ, Astray J, Castro A, González-Candelas F, Mayoral JM, Quintana JM, Domínguez Á; Grupo de Trabajo del Proyecto CIBERESP de Casos y Controles sobre la Gripe Pandémica, España.

Arch Bronconeumol. 2016 Jun;52(6):299-307. doi: 10.1016/j.arbres.2015.11.006. Epub 2016 Jan 22. English, Spanish.

34.

Transmission of human immunodeficiency virus Type-1 by fresh-frozen plasma treated with methylene blue and light.

Álvarez M, Luis-Hidalgo M, Bracho MA, Blanquer A, Larrea L, Villalba J, Puig N, Planelles D, Montoro J, González-Candelas F, Roig R.

Transfusion. 2016 Apr;56(4):831-6. doi: 10.1111/trf.13409. Epub 2015 Nov 20.

PMID:
26585542
35.

Correction: No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.

Garcia-Etxebarria K, Bracho MA, Galán JC, Pumarola T, Castilla J, Ortiz de Lejarazu R, Rodríguez-Dominguez M, Quintela I, Bonet N, Garcia-Garcerà M, Domínguez A, González-Candelas F, Calafell F; CIBERESP Cases; Controls in Pandemic Influenza Working Group.

PLoS One. 2015 Oct 30;10(10):e0141661. doi: 10.1371/journal.pone.0141661. eCollection 2015. No abstract available.

36.

No Major Host Genetic Risk Factor Contributed to A(H1N1)2009 Influenza Severity.

Garcia-Etxebarria K, Bracho MA, Galán JC, Pumarola T, Castilla J, Ortiz de Lejarazu R, Rodríguez-Dominguez M, Quintela I, Bonet N, Garcia-Garcerà M, Domínguez A, González-Candelas F, Calafell F; CIBERESP Cases and Controls in Pandemic Influenza Working Group.

PLoS One. 2015 Sep 17;10(9):e0135983. doi: 10.1371/journal.pone.0135983. eCollection 2015. Erratum in: PLoS One. 2015;10(10):e0141661.

37.

Social class based on occupation is associated with hospitalization for A(H1N1)pdm09 infection. Comparison between hospitalized and ambulatory cases.

Pujol J, Godoy P, Soldevila N, Castilla J, González-Candelas F, Mayoral JM, Astray J, Garcia S, Martin V, Tamames S, Delgado M, Domínguez A; CIBERESP Cases and Controls in Pandemic Influenza Working Group.

Epidemiol Infect. 2016 Mar;144(4):732-40. doi: 10.1017/S0950268815001892. Epub 2015 Aug 14.

PMID:
26271901
38.

Geographical and Temporal Structures of Legionella pneumophila Sequence Types in Comunitat Valenciana (Spain), 1998 to 2013.

Sánchez-Busó L, Coscollà M, Palero F, Camaró ML, Gimeno A, Moreno P, Escribano I, López Perezagua MM, Colomina J, Vanaclocha H, González-Candelas F.

Appl Environ Microbiol. 2015 Oct;81(20):7106-13. doi: 10.1128/AEM.02196-15. Epub 2015 Jul 31.

39.

Expansion of the CRF19_cpx Variant in Spain.

Patiño Galindo JA, Torres-Puente M, Gimeno C, Ortega E, Navarro D, Galindo MJ, Navarro L, Navarro V, Juan A, Belda J, Bracho MA, González-Candelas F; CRIVIH.

J Clin Virol. 2015 Aug;69:146-9. doi: 10.1016/j.jcv.2015.06.094. Epub 2015 Jun 23.

PMID:
26209397
40.

Influenza vaccination of primary healthcare physicians may be associated with vaccination in their patients: a vaccination coverage study.

Godoy P, Castilla J, Mayoral JM, Martín V, Astray J, Torner N, Toledo D, Soldevila N, González-Candelas F, García S, Diaz-Borrego J, Tamames S, Domínguez A; Working Group for the Survey on Influenza Vaccination in Primary Health Care Professionals.

BMC Fam Pract. 2015 Mar 31;16:44. doi: 10.1186/s12875-015-0259-0.

41.

A novel approach to identify candidate prognostic factors for hepatitis C treatment response integrating clinical and viral genetic data.

Amadoz A, González-Candelas F.

Evol Bioinform Online. 2015 Feb 23;11:15-24. doi: 10.4137/EBO.S20853. eCollection 2015.

42.

Comparative genomic and phylogenetic analyses of Gammaproteobacterial glg genes traced the origin of the Escherichia coli glycogen glgBXCAP operon to the last common ancestor of the sister orders Enterobacteriales and Pasteurellales.

Almagro G, Viale AM, Montero M, Rahimpour M, Muñoz FJ, Baroja-Fernández E, Bahaji A, Zúñiga M, González-Candelas F, Pozueta-Romero J.

PLoS One. 2015 Jan 21;10(1):e0115516. doi: 10.1371/journal.pone.0115516. eCollection 2015.

43.

Managing an online survey about influenza vaccination in primary healthcare workers.

Toledo D, Aerny N, Soldevila N, Baricot M, Godoy P, Castilla J, García-Gutierrez S, Torner N, Astray J, Mayoral JM, Tamames S, González-Candelas F, Martín V, Díaz J, Domíguez A; CIBERESP Working Group for the Survey on Influenza Vaccination in Primary Health Care Workers.

Int J Environ Res Public Health. 2015 Jan 9;12(1):541-53. doi: 10.3390/ijerph120100541.

44.

Recombination in viruses: mechanisms, methods of study, and evolutionary consequences.

Pérez-Losada M, Arenas M, Galán JC, Palero F, González-Candelas F.

Infect Genet Evol. 2015 Mar;30:296-307. doi: 10.1016/j.meegid.2014.12.022. Epub 2014 Dec 23. Review.

45.

Visualizing knowledge and attitude factors related to influenza vaccination of physicians.

Antón-Ladislao A, García-Gutiérrez S, Soldevila N, González-Candelas F, Godoy P, Castilla J, Mayoral JM, Astray J, Martín V, Tamames S, Toledo D, Aguirre U, Domínguez A; CIBERESP Working Group for the Survey on Influenza Vaccination in Primary Health Care Workers.

Vaccine. 2015 Feb 11;33(7):885-91. doi: 10.1016/j.vaccine.2014.12.012. Epub 2014 Dec 19.

PMID:
25529290
46.

Phylogenetic analysis of environmental Legionella pneumophila isolates from an endemic area (Alcoy, Spain).

Sánchez-Busó L, Olmos MP, Camaró ML, Adrián F, Calafat JM, González-Candelas F.

Infect Genet Evol. 2015 Mar;30:45-54. doi: 10.1016/j.meegid.2014.12.008. Epub 2014 Dec 13.

PMID:
25511251
47.

Knowledge of and attitudes to influenza in unvaccinated primary care physicians and nurses.

Domínguez A, Godoy P, Castilla J, María Mayoral J, Soldevila N, Torner N, Toledo D, Astray J, Tamames S, García-Gutiérrez S, González-Candelas F, Martín V, Díaz J; CIBERES P Working Group for the Survey on Influenza Vaccination in Primary Health Care Workers.

Hum Vaccin Immunother. 2014;10(8):2378-86. doi: 10.4161/hv.29142.

48.

[Molecular epidemiology studies on the immigrant population in Spain].

González-Candelas F, Alma Bracho M, Comas I, d'Auria G, D Unková M, García R, Gosalbes MJ, Isaac S, Latorre A, López-Labrador FX, Patiño Galindo JÁ, Palero F, Pérez-Brocal V, Pérez-Cobas AE, Sánchez-Busó L, Silva FJ, Vázquez-Castellanos JF, Moya A.

Rev Esp Salud Publica. 2014 Nov-Dec;88(6):819-28. doi: 10.4321/S1135-57272014000600013. Review. Spanish.

49.

Relating the outcome of HCV infection and different host SNP polymorphisms in a Majorcan population coinfected with HCV-HIV and treated with pegIFN-RBV.

Matas M, Picornell A, Cifuentes C, Payeras A, Homar F, González-Candelas F, López-Labrador FX, Moya A, Ramon C, Castro JA.

Int Microbiol. 2014 Mar;17(1):11-20.

50.

Recombination drives genome evolution in outbreak-related Legionella pneumophila isolates.

Sánchez-Busó L, Comas I, Jorques G, González-Candelas F.

Nat Genet. 2014 Nov;46(11):1205-11. doi: 10.1038/ng.3114. Epub 2014 Oct 5.

PMID:
25282102

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