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Items: 1 to 50 of 70

1.

Lattice Boltzmann methods and active fluids.

Carenza LN, Gonnella G, Lamura A, Negro G, Tiribocchi A.

Eur Phys J E Soft Matter. 2019 Jun 28;42(6):81. doi: 10.1140/epje/i2019-11843-6. Review.

PMID:
31250142
2.

Anesthetic management of a parturient with Behcet's Disease and suspected arhythmogenic right ventricular dysplasia (ARVD).

Giuri PP, Gonnella GL, Catarci S, Ciancia M, Draisci G.

Korean J Anesthesiol. 2019 Jun 20. doi: 10.4097/kja.19213. [Epub ahead of print] No abstract available.

3.

Transcriptional Bursts in a Nonequilibrium Model for Gene Regulation by Supercoiling.

Ancona M, Bentivoglio A, Brackley CA, Gonnella G, Marenduzzo D.

Biophys J. 2019 Jul 23;117(2):369-376. doi: 10.1016/j.bpj.2019.04.023. Epub 2019 Apr 26.

PMID:
31103229
4.

Horizontal acquisition of hydrogen conversion ability and other habitat adaptations in the Hydrogenovibrio strains SP-41 and XCL-2.

Gonnella G, Adam N, Perner M.

BMC Genomics. 2019 May 6;20(1):339. doi: 10.1186/s12864-019-5710-5.

5.

Lamellar ordering, droplet formation and phase inversion in exotic active emulsions.

Bonelli F, Carenza LN, Gonnella G, Marenduzzo D, Orlandini E, Tiribocchi A.

Sci Rep. 2019 Feb 26;9(1):2801. doi: 10.1038/s41598-019-39190-6.

6.

GfaViz: flexible and interactive visualization of GFA sequence graphs.

Gonnella G, Niehus N, Kurtz S.

Bioinformatics. 2019 Aug 15;35(16):2853-2855. doi: 10.1093/bioinformatics/bty1046.

PMID:
30596893
7.

TDP-43 enhances translation of specific mRNAs linked to neurodegenerative disease.

Neelagandan N, Gonnella G, Dang S, Janiesch PC, Miller KK, Küchler K, Marques RF, Indenbirken D, Alawi M, Grundhoff A, Kurtz S, Duncan KE.

Nucleic Acids Res. 2019 Jan 10;47(1):341-361. doi: 10.1093/nar/gky972.

8.

Active dumbbells: Dynamics and morphology in the coexisting region.

Petrelli I, Digregorio P, Cugliandolo LF, Gonnella G, Suma A.

Eur Phys J E Soft Matter. 2018 Oct 25;41(10):128. doi: 10.1140/epje/i2018-11739-y.

PMID:
30353425
9.

Successful use of spinal anesthesia for an urgent cesarean section in a parturient with a severe Klippel-Trénaunay syndrome.

Gonnella GL, Scorzoni M, Catarci S, Zanfini BA, Draisci G.

Korean J Anesthesiol. 2018 Oct;71(5):411-412. doi: 10.4097/kja.d.18.00050. Epub 2018 Oct 1. No abstract available.

10.

Full Phase Diagram of Active Brownian Disks: From Melting to Motility-Induced Phase Separation.

Digregorio P, Levis D, Suma A, Cugliandolo LF, Gonnella G, Pagonabarraga I.

Phys Rev Lett. 2018 Aug 31;121(9):098003. doi: 10.1103/PhysRevLett.121.098003.

PMID:
30230874
11.

Hydrothermal chimneys host habitat-specific microbial communities: analogues for studying the possible impact of mining seafloor massive sulfide deposits.

Han Y, Gonnella G, Adam N, Schippers A, Burkhardt L, Kurtz S, Schwarz-Schampera U, Franke H, Perner M.

Sci Rep. 2018 Jul 10;8(1):10386. doi: 10.1038/s41598-018-28613-5.

12.

Non-equilibrium phase transition in a model for supercoiling-dependent DNA transcription.

Bentivoglio A, Ancona M, Brackley CA, Gonnella G, Marenduzzo D.

Soft Matter. 2018 May 9;14(18):3632-3639. doi: 10.1039/c7sm02452e.

PMID:
29691522
13.

Corner-transport-upwind lattice Boltzmann model for bubble cavitation.

Sofonea V, Biciuşcă T, Busuioc S, Ambruş VE, Gonnella G, Lamura A.

Phys Rev E. 2018 Feb;97(2-1):023309. doi: 10.1103/PhysRevE.97.023309.

PMID:
29548242
14.

Phase Coexistence in Two-Dimensional Passive and Active Dumbbell Systems.

Cugliandolo LF, Digregorio P, Gonnella G, Suma A.

Phys Rev Lett. 2017 Dec 29;119(26):268002. doi: 10.1103/PhysRevLett.119.268002. Epub 2017 Dec 29.

PMID:
29328721
15.

Lattice Boltzmann study of chemically-driven self-propelled droplets.

Fadda F, Gonnella G, Lamura A, Tiribocchi A.

Eur Phys J E Soft Matter. 2017 Dec 19;40(12):112. doi: 10.1140/epje/i2017-11603-8.

PMID:
29256179
16.

Large Fluctuations and Dynamic Phase Transition in a System of Self-Propelled Particles.

Cagnetta F, Corberi F, Gonnella G, Suma A.

Phys Rev Lett. 2017 Oct 13;119(15):158002. doi: 10.1103/PhysRevLett.119.158002. Epub 2017 Oct 12.

PMID:
29077467
17.

Switching dynamics in cholesteric liquid crystal emulsions.

Fadda F, Gonnella G, Marenduzzo D, Orlandini E, Tiribocchi A.

J Chem Phys. 2017 Aug 14;147(6):064903. doi: 10.1063/1.4997637.

PMID:
28810771
18.

GfaPy: a flexible and extensible software library for handling sequence graphs in Python.

Gonnella G, Kurtz S.

Bioinformatics. 2017 Oct 1;33(19):3094-3095. doi: 10.1093/bioinformatics/btx398.

PMID:
28645150
19.

Utility of ultrasound-guided transversus abdominis plane block for day-case inguinal hernia repair.

Frassanito L, Pitoni S, Gonnella G, Alfieri S, Del Vicario M, Catarci S, Draisci G.

Korean J Anesthesiol. 2017 Feb;70(1):46-51. doi: 10.4097/kjae.2017.70.1.46. Epub 2016 Oct 25.

20.

RGFA: powerful and convenient handling of assembly graphs.

Gonnella G, Kurtz S.

PeerJ. 2016 Nov 8;4:e2681. eCollection 2016.

21.

Endemic hydrothermal vent species identified in the open ocean seed bank.

Gonnella G, Böhnke S, Indenbirken D, Garbe-Schönberg D, Seifert R, Mertens C, Kurtz S, Perner M.

Nat Microbiol. 2016 Jun 13;1(8):16086. doi: 10.1038/nmicrobiol.2016.86.

PMID:
27573109
22.

Stochastic Model of Supercoiling-Dependent Transcription.

Brackley CA, Johnson J, Bentivoglio A, Corless S, Gilbert N, Gonnella G, Marenduzzo D.

Phys Rev Lett. 2016 Jul 1;117(1):018101. doi: 10.1103/PhysRevLett.117.018101. Epub 2016 Jun 27.

PMID:
27419594
23.

Spontaneous flow in polar active fluids: the effect of a phenomenological self propulsion-like term.

Bonelli F, Gonnella G, Tiribocchi A, Marenduzzo D.

Eur Phys J E Soft Matter. 2016 Jan;39(1):1. doi: 10.1140/epje/i2016-16001-2. Epub 2016 Jan 14.

PMID:
26769011
24.

Rotational and translational diffusion in an interacting active dumbbell system.

Cugliandolo LF, Gonnella G, Suma A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Jun;91(6):062124. Epub 2015 Jun 18.

PMID:
26172678
25.

Dynamics of a homogeneous active dumbbell system.

Suma A, Gonnella G, Laghezza G, Lamura A, Mossa A, Cugliandolo LF.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Nov;90(5-1):052130. Epub 2014 Nov 17.

PMID:
25493762
26.

Molecular signatures of mouse TRPV1-lineage neurons revealed by RNA-Seq transcriptome analysis.

Goswami SC, Mishra SK, Maric D, Kaszas K, Gonnella GL, Clokie SJ, Kominsky HD, Gross JR, Keller JM, Mannes AJ, Hoon MA, Iadarola MJ.

J Pain. 2014 Dec;15(12):1338-1359. doi: 10.1016/j.jpain.2014.09.010. Epub 2014 Oct 2.

27.

Condensation of fluctuations in and out of equilibrium.

Zannetti M, Corberi F, Gonnella G.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Jul;90(1):012143. Epub 2014 Jul 30.

PMID:
25122287
28.

Pattern formation in liquid-vapor systems under periodic potential and shear.

Coclite A, Gonnella G, Lamura A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Jun;89(6):063303. Epub 2014 Jun 9.

PMID:
25019908
29.

Handling temperature bursts reaching 464°C: different microbial strategies in the sisters peak hydrothermal chimney.

Perner M, Gonnella G, Kurtz S, LaRoche J.

Appl Environ Microbiol. 2014 Aug;80(15):4585-98.

30.

Non-invasive ventilation for acute respiratory failure in preterm pregnancy.

Draisci G, Volpe C, Pitoni S, Zanfini BA, Gonnella GL, Catarci S, Frassanito L, Maggiore SM.

Int J Obstet Anesth. 2013 Apr;22(2):169-71. doi: 10.1016/j.ijoa.2012.12.003. Epub 2013 Mar 7. No abstract available.

PMID:
23465361
31.

Resiniferatoxin for Pain Treatment: An Interventional Approach to Personalized Pain Medicine.

Iadarola MJ, Gonnella GL.

Open Pain J. 2013;6:95-107. Epub 2013 Mar 8.

32.

In situ chemistry and microbial community compositions in five deep-sea hydrothermal fluid samples from Irina II in the Logatchev field.

Perner M, Gonnella G, Hourdez S, Böhnke S, Kurtz S, Girguis P.

Environ Microbiol. 2013 May;15(5):1551-60. doi: 10.1111/1462-2920.12038. Epub 2012 Nov 22.

PMID:
23171403
33.

Readjoiner: a fast and memory efficient string graph-based sequence assembler.

Gonnella G, Kurtz S.

BMC Bioinformatics. 2012 May 6;13:82. doi: 10.1186/1471-2105-13-82.

34.

Bistable defect structures in blue phase devices.

Tiribocchi A, Gonnella G, Marenduzzo D, Orlandini E, Salvadore F.

Phys Rev Lett. 2011 Dec 2;107(23):237803. Epub 2011 Dec 1.

PMID:
22182126
35.

Shearing self-propelled suspensions: arrest of coarsening and suppression of giant density fluctuations.

Saracco GP, Gonnella G, Marenduzzo D, Orlandini E.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Sep;84(3 Pt 1):031930. Epub 2011 Sep 29.

PMID:
22060426
36.

Thermal and hydrodynamic effects in the ordering of lamellar fluids.

Gonnella G, Lamura A, Tiribocchi A.

Philos Trans A Math Phys Eng Sci. 2011 Jun 28;369(1945):2592-9. doi: 10.1098/rsta.2011.0020.

PMID:
21576175
37.

Phase separation of binary fluids with dynamic temperature.

Gonnella G, Lamura A, Piscitelli A, Tiribocchi A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Oct;82(4 Pt 2):046302. Epub 2010 Oct 7.

PMID:
21230385
38.

Which factors predict candidate outcome in advanced life support courses? A preliminary observational study.

Sandroni C, Gonnella GL, de Waure C, Cavallaro F, La Torre G, Antonelli M.

Intensive Care Med. 2010 Sep;36(9):1521-5. doi: 10.1007/s00134-010-1926-1. Epub 2010 Jun 18.

39.

Monte Carlo study of the phase transition in the critical behavior of the Ising model with shear.

Saracco GP, Gonnella G.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Nov;80(5 Pt 1):051126. Epub 2009 Nov 24.

PMID:
20364966
40.

Hybrid lattice Boltzmann model for binary fluid mixtures.

Tiribocchi A, Stella N, Gonnella G, Lamura A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Aug;80(2 Pt 2):026701. Epub 2009 Aug 7.

PMID:
19792275
41.

Lattice Boltzmann simulation of thermal nonideal fluids.

Gonnella G, Lamura A, Sofonea V.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Sep;76(3 Pt 2):036703. Epub 2007 Sep 7.

PMID:
17930357
42.

Kinetics of self-induced aggregation in Brownian particles.

Cecconi F, Gonnella G, Saracco GP.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Mar;75(3 Pt 1):031111. Epub 2007 Mar 20.

PMID:
17500672
43.

Long-time behavior and different shear regimes in quenched binary mixtures.

Gonnella G, Lamura A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Jan;75(1 Pt 1):011501. Epub 2007 Jan 9.

PMID:
17358154
44.

Morphologies and flow patterns in quenching of lamellar systems with shear.

Xu A, Gonnella G, Lamura A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Jul;74(1 Pt 1):011505. Epub 2006 Jul 24.

PMID:
16907098
45.

Monte Carlo results for the Ising model with shear.

Cirillo EN, Gonnella G, Saracco GP.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Aug;72(2 Pt 2):026139. Epub 2005 Aug 31.

PMID:
16196676
46.

Finite-difference lattice Boltzmann model with flux limiters for liquid-vapor systems.

Sofonea V, Lamura A, Gonnella G, Cristea A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Oct;70(4 Pt 2):046702. Epub 2004 Oct 6.

PMID:
15600560
47.

Phase-separating binary fluids under oscillatory shear.

Xu A, Gonnella G, Lamura A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2003 May;67(5 Pt 2):056105. Epub 2003 May 9.

PMID:
12786218
48.

Rheological behavior of microemulsions.

Gonnella G, Ruggieri M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Sep;66(3 Pt 1):031506. Epub 2002 Sep 24.

PMID:
12366119
49.

Ordering of the lamellar phase under a shear flow.

Corberi F, Gonnella G, Lamura A.

Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Jul;66(1 Pt 2):016114. Epub 2002 Jul 22.

PMID:
12241433
50.

Phase separation in two-dimensional fluids: the role of noise.

Gonnella G, Orlandini E, Yeomans JM.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1999 May;59(5 Pt A):R4741-4.

PMID:
11969508

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