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Items: 1 to 50 of 662

1.

The calibrated model-based concordance improved assessment of discriminative ability in patient clusters of limited sample size.

van Klaveren D, Steyerberg EW, Gönen M, Vergouwe Y.

Diagn Progn Res. 2019 Jun 6;3:11. doi: 10.1186/s41512-019-0055-8. eCollection 2019.

2.

Path2Surv: Pathway/gene set-based survival analysis using multiple kernel learning.

Dereli O, Oğuz C, Gönen M.

Bioinformatics. 2019 May 30. pii: btz446. doi: 10.1093/bioinformatics/btz446. [Epub ahead of print]

PMID:
31147687
3.

A prospective prediction tool for understanding Crimean-Congo haemorrhagic fever dynamics in Turkey.

Ak Ç, Ergönül Ö, Gönen M.

Clin Microbiol Infect. 2019 May 23. pii: S1198-743X(19)30221-6. doi: 10.1016/j.cmi.2019.05.006. [Epub ahead of print]

PMID:
31129282
4.

Contemporary Validation of a Nomogram Predicting Colon Cancer Recurrence, Revealing All-Stage Improved Outcomes.

Konishi T, Shimada Y, Hsu M, Wei IH, Pappou E, Smith JJ, Nash GM, Guillem JG, Paty PB, Garcia-Aguilar J, Cercek A, Yaeger R, Stadler ZK, Segal NH, Varghese A, Saltz LB, Shia J, Vakiani E, Gönen M, Weiser MR.

JNCI Cancer Spectr. 2019 Jun;3(2):pkz015. doi: 10.1093/jncics/pkz015. Epub 2019 Apr 25.

5.

Changes in the Multidisciplinary Management of Rectal Cancer from 2009 to 2015 and Associated Improvements in Short-Term Outcomes.

Roxburgh CSD, Strombom P, Lynn P, Cercek A, Gonen M, Smith JJ, Temple LKF, Nash GM, Guillem JG, Paty PB, Shia J, Vakiani E, Yaeger R, Stadler ZK, Segal NH, Reidy D, Varghese A, Wu AJ, Crane CH, Gollub MJ, Saltz LB, Garcia-Aguilar J, Weiser MR.

Colorectal Dis. 2019 May 20. doi: 10.1111/codi.14713. [Epub ahead of print]

PMID:
31108012
6.

There is still a place for significance testing in clinical trials.

Cook JA, Fergusson DA, Ford I, Gonen M, Kimmelman J, Korn EL, Begg CB.

Clin Trials. 2019 Jun;16(3):223-224. doi: 10.1177/1740774519846504. Epub 2019 May 9. No abstract available.

PMID:
31068002
7.

Imaging metastatic castration-resistant prostate cancer patients with 89Zr-DFO-MSTP2109A anti-STEAP1 antibody.

Carrasquillo JA, Fine B, Pandit-Taskar N, Larson SM, Fleming S, Fox JJ, Cheal SM, O'Donoghue JA, Ruan S, Ragupathi G, Lyashchenko SK, Humm JL, Scher HI, Gonen M, Williams S, Danila DC, Morris MJ.

J Nucl Med. 2019 May 3. pii: jnumed.118.222844. doi: 10.2967/jnumed.118.222844. [Epub ahead of print]

PMID:
31053681
8.

Evolution of surgical management of gallbladder carcinoma and impact on outcome: results from two decades at a single-institution.

Creasy JM, Goldman DA, Gonen M, Dudeja V, O'Reilly EM, Abou-Alfa GK, Cercek A, Harding JJ, Balachandran VP, Drebin JA, Allen PJ, Kingham TP, D'Angelica MI, Jarnagin WR.

HPB (Oxford). 2019 Apr 23. pii: S1365-182X(19)30496-4. doi: 10.1016/j.hpb.2019.03.370. [Epub ahead of print]

PMID:
31027875
9.

Computational modeling of pancreatic cancer patients receiving FOLFIRINOX and gemcitabine-based therapies identifies optimum intervention strategies.

Yamamoto KN, Nakamura A, Liu LL, Stein S, Tramontano AC, Kartoun U, Shimizu T, Inoue Y, Asakuma M, Haeno H, Kong CY, Uchiyama K, Gonen M, Hur C, Michor F.

PLoS One. 2019 Apr 26;14(4):e0215409. doi: 10.1371/journal.pone.0215409. eCollection 2019.

10.

Prospective Study of the Radiolabeled GRPR Antagonist BAY86-7548 for Positron Emission Tomography/Computed Tomography Imaging of Newly Diagnosed Prostate Cancer.

Touijer KA, Michaud L, Alvarez HAV, Gopalan A, Kossatz S, Gonen M, Beattie B, Sandler I, Lyaschenko S, Eastham JA, Scardino PT, Hricak H, Weber WA.

Eur Urol Oncol. 2019 Mar;2(2):166-173. doi: 10.1016/j.euo.2018.08.011. Epub 2018 Sep 22.

PMID:
31017093
11.

Promoters of Colistin Resistance in Acinetobacter baumannii Infections.

Nurtop E, Bayındır Bilman F, Menekse S, Kurt Azap O, Gönen M, Ergonul O, Can F.

Microb Drug Resist. 2019 Apr 9. doi: 10.1089/mdr.2018.0396. [Epub ahead of print]

PMID:
30964377
12.

Role of the Interval from Completion of Neoadjuvant Therapy to Surgery in Postoperative Morbidity in Patients with Locally Advanced Rectal Cancer.

Roxburgh CSD, Strombom P, Lynn P, Gonen M, Paty PB, Guillem JG, Nash GM, Smith JJ, Wei I, Pappou E, Garcia-Aguilar J, Weiser MR.

Ann Surg Oncol. 2019 Jul;26(7):2019-2027. doi: 10.1245/s10434-019-07340-9. Epub 2019 Apr 8.

PMID:
30963399
13.

Outcome of 1000 Patients With Gastrointestinal Stromal Tumor (GIST) Treated by Surgery in the Pre and Post-imatinib Eras.

Cavnar MJ, Seier K, Curtin C, Balachandran VP, Coit DG, Yoon SS, Crago AM, Strong VE, Tap WD, Gönen M, Antonescu CR, Brennan MF, Singer S, DeMatteo RP.

Ann Surg. 2019 Apr 2. doi: 10.1097/SLA.0000000000003277. [Epub ahead of print]

PMID:
30946076
14.

Radiogenomics of rectal adenocarcinoma in the era of precision medicine: A pilot study of associations between qualitative and quantitative MRI imaging features and genetic mutations.

Horvat N, Veeraraghavan H, Pelossof RA, Fernandes MC, Arora A, Khan M, Marco M, Cheng CT, Gonen M, Golia Pernicka JS, Gollub MJ, Garcia-Aguillar J, Petkovska I.

Eur J Radiol. 2019 Apr;113:174-181. doi: 10.1016/j.ejrad.2019.02.022. Epub 2019 Feb 18.

PMID:
30927944
15.

Comparing Objective and Subjective Bayes Factors for the Two-Sample Comparison: The Classification Theorem in Action.

Gönen M, Johnson WO, Lu Y, Westfall PH.

Am Stat. 2019;73(1):22-31. doi: 10.1080/00031305.2017.1322142. Epub 2018 May 10.

PMID:
30905968
16.

Quality of life improves after palliative placement of percutaneous tunneled drainage catheter for refractory ascites in prospective study of patients with end-stage cancer.

Robson PC, Gonen M, Ni A, Brody L, Brown KT, Getrajdman G, Thom B, Kline N, Covey A.

Palliat Support Care. 2019 Mar 18:1-9. doi: 10.1017/S1478951519000051. [Epub ahead of print]

PMID:
30880658
17.

Statistical Shape Analysis of Subthalamic Nucleus in Patients with Parkinson Disease.

Kaya MO, Ozturk S, Ercan I, Gonen M, Serhat Erol F, Kocabicak E.

World Neurosurg. 2019 Mar 9. pii: S1878-8750(19)30603-5. doi: 10.1016/j.wneu.2019.02.180. [Epub ahead of print]

PMID:
30862597
18.

Quantitative Non-Gaussian Intravoxel Incoherent Motion Diffusion-Weighted Imaging Metrics and Surgical Pathology for Stratifying Tumor Aggressiveness in Papillary Thyroid Carcinomas.

Núñez DA, Lu Y, Paudyal R, Hatzoglou V, Moreira AL, Oh JH, Stambuk HE, Mazaheri Y, Gonen M, Ghossein RA, Shaha AR, Tuttle RM, Shukla-Dave A.

Tomography. 2019 Mar;5(1):26-35. doi: 10.18383/j.tom.2018.00054.

19.

The quality of ECG data acquisition, and diagnostic performance of a novel adhesive patch for ambulatory cardiac rhythm monitoring in arrhythmia detection.

Karaoğuz MR, Yurtseven E, Aslan G, Deliormanlı BG, Adıgüzel Ö, Gönen M, Li KM, Yılmaz EN.

J Electrocardiol. 2019 May - Jun;54:28-35. doi: 10.1016/j.jelectrocard.2019.02.012. Epub 2019 Feb 28.

PMID:
30851474
20.

Adjuvant Hepatic Artery Infusion Chemotherapy is Associated With Improved Survival Regardless of KRAS Mutation Status in Patients With Resected Colorectal Liver Metastases: A Retrospective Analysis of 674 Patients.

Gholami S, Kemeny NE, Boucher TM, Gönen M, Cercek A, Kingham TP, Balachandran V, Allen P, DeMatteo R, Drebin J, Jarnagin W, D'Angelica M.

Ann Surg. 2019 Feb 19. doi: 10.1097/SLA.0000000000003248. [Epub ahead of print]

PMID:
30817353
21.

Ureteral Catheter Versus Nephrostomy Tube for Patients Undergoing Percutaneous Nephrolithotomy Under Spinal Anesthesia: A Prospectively Randomized Trial.

Gönen M, Arslan ÖE, Dönmez Mİ, Halat AÖ, Sezgin T.

J Endourol. 2019 Apr;33(4):291-294. doi: 10.1089/end.2018.0875.

PMID:
30793924
22.

Protein dynamics analysis reveals that missense mutations in cancer-related genes appear frequently on hinge-neighboring residues.

Sayılgan JF, Haliloğlu T, Gönen M.

Proteins. 2019 Jun;87(6):512-519. doi: 10.1002/prot.25673. Epub 2019 Mar 6.

PMID:
30785643
23.

Peripheral Circulating Tumor DNA Detection Predicts Poor Outcomes After Liver Resection for Metastatic Colorectal Cancer.

Narayan RR, Goldman DA, Gonen M, Reichel J, Huberman KH, Raj S, Viale A, Kemeny NE, Allen PJ, Balachandran VP, D'Angelica MI, DeMatteo RP, Drebin JA, Jarnagin WR, Kingham TP.

Ann Surg Oncol. 2019 Jun;26(6):1824-1832. doi: 10.1245/s10434-019-07201-5. Epub 2019 Jan 31.

PMID:
30706231
24.

Examining the associations between children's receptive language skills and developmental domains in the United States and Turkey.

Guler Yildiz T, Gonen M, Ulker Erdem A, Garcia A, Raikes H, Acar IH, Burcak F, Turan F, Can Gul S, Davis D.

J Child Lang. 2019 May;46(3):480-500. doi: 10.1017/S0305000918000570. Epub 2019 Jan 31.

PMID:
30700341
25.

Vol-PACT: A Foundation for the NIH Public-Private Partnership That Supports Sharing of Clinical Trial Data for the Development of Improved Imaging Biomarkers in Oncology.

Dercle L, Connors DE, Tang Y, Adam SJ, Gönen M, Hilden P, Karovic S, Maitland M, Moskowitz CS, Kelloff G, Zhao B, Oxnard GR, Schwartz LH.

JCO Clin Cancer Inform. 2018 Dec;2:1-12. doi: 10.1200/CCI.17.00137.

26.

Perioperative Bundle to Reduce Surgical Site Infection after Pancreaticoduodenectomy: A Prospective Cohort Study.

Lawrence SA, McIntyre CA, Pulvirenti A, Seier K, Chou Y, Gonen M, Balachandran VP, Kingham TP, D'Angelica MI, Drebin JA, Jarnagin WR, Allen PJ.

J Am Coll Surg. 2019 Apr;228(4):595-601. doi: 10.1016/j.jamcollsurg.2018.12.018. Epub 2019 Jan 8.

PMID:
30630087
27.

Assessment of a Watch-and-Wait Strategy for Rectal Cancer in Patients With a Complete Response After Neoadjuvant Therapy.

Smith JJ, Strombom P, Chow OS, Roxburgh CS, Lynn P, Eaton A, Widmar M, Ganesh K, Yaeger R, Cercek A, Weiser MR, Nash GM, Guillem JG, Temple LKF, Chalasani SB, Fuqua JL, Petkovska I, Wu AJ, Reyngold M, Vakiani E, Shia J, Segal NH, Smith JD, Crane C, Gollub MJ, Gonen M, Saltz LB, Garcia-Aguilar J, Paty PB.

JAMA Oncol. 2019 Jan 10:e185896. doi: 10.1001/jamaoncol.2018.5896. [Epub ahead of print]

PMID:
30629084
28.

Variance prior specification for a basket trial design using Bayesian hierarchical modeling.

Cunanan KM, Iasonos A, Shen R, Gönen M.

Clin Trials. 2019 Apr;16(2):142-153. doi: 10.1177/1740774518812779. Epub 2018 Dec 7.

PMID:
30526008
29.

Psychiatric symptoms in migraine patients and their attitudes towards psychological support on stigmatization.

Korkmaz S, Kazgan A, Korucu T, Gönen M, Yilmaz MZ, Atmaca M.

J Clin Neurosci. 2019 Apr;62:180-183. doi: 10.1016/j.jocn.2018.11.035. Epub 2018 Nov 22.

PMID:
30472336
30.

Regional differences in gallbladder cancer pathogenesis: Insights from a multi-institutional comparison of tumor mutations.

Narayan RR, Creasy JM, Goldman DA, Gönen M, Kandoth C, Kundra R, Solit DB, Askan G, Klimstra DS, Basturk O, Allen PJ, Balachandran VP, D'Angelica MI, DeMatteo RP, Drebin JA, Kingham TP, Simpson AL, Abou-Alfa GK, Harding JJ, O'Reilly EM, Butte JM, Matsuyama R, Endo I, Jarnagin WR.

Cancer. 2019 Feb 15;125(4):575-585. doi: 10.1002/cncr.31850. Epub 2018 Nov 14.

PMID:
30427539
31.

Outcomes after Pancreatectomy with Routine Pasireotide Use.

Kunstman JW, Goldman DA, Gönen M, Balachandran VP, D'Angelica MI, Kingham TP, Jarnagin WR, Allen PJ.

J Am Coll Surg. 2019 Feb;228(2):161-170.e2. doi: 10.1016/j.jamcollsurg.2018.10.018. Epub 2018 Nov 7.

PMID:
30414453
32.

Risk-based stratification of carcinomas concurrently involving the endometrium and ovary.

Turashvili G, Gómez-Hidalgo NR, Flynn J, Gonen M, Leitao MM Jr, Soslow RA, Murali R.

Gynecol Oncol. 2019 Jan;152(1):38-45. doi: 10.1016/j.ygyno.2018.10.033. Epub 2018 Nov 6.

PMID:
30413340
33.

Development and external validation of a pathological nodal staging score for patients with clear cell renal cell carcinoma.

Rieken M, Boorjian SA, Kluth LA, Capitanio U, Briganti A, Thompson RH, Leibovich BC, Krabbe LM, Margulis V, Raman JD, Regelman M, Karakiewicz PI, Rouprêt M, Abufaraj M, Foerster B, Gönen M, Shariat SF.

World J Urol. 2018 Nov 7. doi: 10.1007/s00345-018-2555-5. [Epub ahead of print]

34.

Correction to: Hypophosphatemia as a Predictor of Organ-Specific Complications Following Gastrointestinal Surgery: Analysis of 8034 Patients.

Sadot E, Zheng J, Srouji R, Strong VE, Gönen M, Balachandran VP, D'Angelica MI, Allen PJ, DeMatteo RP, Kingham TP, Fong Y, Weiser MR, Jarnagin WR.

World J Surg. 2019 Feb;43(2):395. doi: 10.1007/s00268-018-4845-x.

PMID:
30406321
35.

Limited role of Chromogranin A as clinical biomarker for pancreatic neuroendocrine tumors.

Pulvirenti A, Rao D, Mcintyre CA, Gonen M, Tang LH, Klimstra DS, Fleisher M, Ramanathan LV, Reidy-Lagunes D, Allen PJ.

HPB (Oxford). 2019 May;21(5):612-618. doi: 10.1016/j.hpb.2018.09.016. Epub 2018 Oct 23.

PMID:
30366884
36.

Correction to Melanocortin-1 Receptor-Targeting Ultrasmall Silica Nanoparticles for Dual-Modality Human Melanoma Imaging.

Chen F, Zhang X, Ma K, Madajewski B, Benezra M, Zhang L, Phillips E, Turker MZ, Gallazzi F, Penate-Medina O, Overholtzer M, Pauliah M, Gonen M, Zanzonico P, Wiesner U, Bradbury MS, Quinn TP.

ACS Appl Mater Interfaces. 2018 Oct 24;10(42):36584. doi: 10.1021/acsami.8b16671. Epub 2018 Oct 11. No abstract available.

PMID:
30360123
37.

Ultrasmall targeted nanoparticles with engineered antibody fragments for imaging detection of HER2-overexpressing breast cancer.

Chen F, Ma K, Madajewski B, Zhuang L, Zhang L, Rickert K, Marelli M, Yoo B, Turker MZ, Overholtzer M, Quinn TP, Gonen M, Zanzonico P, Tuesca A, Bowen MA, Norton L, Subramony JA, Wiesner U, Bradbury MS.

Nat Commun. 2018 Oct 8;9(1):4141. doi: 10.1038/s41467-018-06271-5.

38.

Factors Affecting Oncologic Outcomes of 90Y Radioembolization of Heavily Pre-Treated Patients With Colon Cancer Liver Metastases.

Kurilova I, Beets-Tan RGH, Flynn J, Gönen M, Ulaner G, Petre EN, Edward Boas F, Ziv E, Yarmohammadi H, Klompenhouwer EG, Cercek A, Kemeny NA, Sofocleous CT.

Clin Colorectal Cancer. 2019 Mar;18(1):8-18. doi: 10.1016/j.clcc.2018.08.004. Epub 2018 Sep 13.

PMID:
30297264
39.

Endoscopic versus percutaneous drainage of post-operative peripancreatic fluid collections following pancreatic resection.

Al Efishat M, Attiyeh MA, Eaton AA, Gönen M, Covey AM, D'Angelica MI, DeMatteo RP, Kingham TP, Balachandran V, Jarnagin WR, Gerdes H, Allen PJ, Schattner MA.

HPB (Oxford). 2019 Apr;21(4):434-443. doi: 10.1016/j.hpb.2018.08.010. Epub 2018 Oct 4.

PMID:
30293867
40.

The Role of AcrAB-TolC Efflux Pumps on Quinolone Resistance of E. coli ST131.

Atac N, Kurt-Azap O, Dolapci I, Yesilkaya A, Ergonul O, Gonen M, Can F.

Curr Microbiol. 2018 Dec;75(12):1661-1666. doi: 10.1007/s00284-018-1577-y. Epub 2018 Oct 3.

PMID:
30283991
41.

Pelvic MRI after induction chemotherapy and before long-course chemoradiation therapy for rectal cancer: What are the imaging findings?

Gollub MJ, Blazic I, Bates DDB, Campbell N, Knezevic A, Gonen M, Lynn P, Weiser MR, Garcia-Aguilar J, Hötker AM, Cercek A, Saltz L.

Eur Radiol. 2019 Apr;29(4):1733-1742. doi: 10.1007/s00330-018-5726-2. Epub 2018 Oct 2.

PMID:
30280248
42.

Value of adding dynamic contrast-enhanced MRI visual assessment to conventional MRI and clinical assessment in the diagnosis of complete tumour response to chemoradiotherapy for rectal cancer.

Gollub MJ, Blazic I, Felder S, Knezevic A, Gonen M, Garcia-Aguilar J, Paty PP, Smith JJ.

Eur Radiol. 2019 Mar;29(3):1104-1113. doi: 10.1007/s00330-018-5719-1. Epub 2018 Sep 21.

PMID:
30242504
43.

Epileptic auditory illusions as reliable findings in the determination of the lateralization and localization of epileptogenic zone.

Balgetir F, Müngen B, Gönen M, Müngen E, Taşcı İ.

Epilepsy Behav. 2018 Nov;88:21-24. doi: 10.1016/j.yebeh.2018.08.017. Epub 2018 Sep 10. No abstract available.

PMID:
30212724
44.

Systematic Review and Meta-analysis of Postexposure Prophylaxis for Crimean-Congo Hemorrhagic Fever Virus among Healthcare Workers.

Ergönül Ö, Keske Ş, Çeldir MG, Kara İA, Pshenichnaya N, Abuova G, Blumberg L, Gönen M.

Emerg Infect Dis. 2018 Sep;24(9):1642-1648. doi: 10.3201/eid2409.171709.

45.

Spatiotemporal prediction of infectious diseases using structured Gaussian processes with application to Crimean-Congo hemorrhagic fever.

Ak Ç, Ergönül Ö, Şencan İ, Torunoğlu MA, Gönen M.

PLoS Negl Trop Dis. 2018 Aug 17;12(8):e0006737. doi: 10.1371/journal.pntd.0006737. eCollection 2018 Aug.

46.

Preoperative risk prediction for intraductal papillary mucinous neoplasms by quantitative CT image analysis.

Attiyeh MA, Chakraborty J, Gazit L, Langdon-Embry L, Gonen M, Balachandran VP, D'Angelica MI, DeMatteo RP, Jarnagin WR, Kingham TP, Allen PJ, Do RK, Simpson AL.

HPB (Oxford). 2019 Feb;21(2):212-218. doi: 10.1016/j.hpb.2018.07.016. Epub 2018 Aug 7.

PMID:
30097414
47.

A perioperative multidisciplinary care bundle reduces surgical site infections in patients undergoing synchronous colorectal and liver resection.

Tufts LS, Jarnagin ED, Flynn JR, Gonen M, Guillem JG, Paty PB, Nash GM, Smith JJ, Wei IH, Pappou E, D'Angelica MI, Allen PJ, Peter Kingham T, Balachandran VP, Drebin JA, Garcia-Aguilar J, Jarnagin WR, Weiser MR.

HPB (Oxford). 2019 Feb;21(2):181-186. doi: 10.1016/j.hpb.2018.07.001. Epub 2018 Aug 1.

PMID:
30077525
48.

Clonal diversity predicts adverse outcome in chronic lymphocytic leukemia.

Leeksma AC, Taylor J, Wu B, Gardner JR, He J, Nahas M, Gonen M, Alemayehu WG, Te Raa D, Walther T, Hüllein J, Dietrich S, Claus R, de Boer F, de Heer K, Dubois J, Dampmann M, Dürig J, van Oers MHJ, Geisler CH, Eldering E, Levine RL, Miller V, Mughal T, Lamanna N, Frattini MG, Heaney ML, Zelenetz A, Zenz T, Abdel-Wahab O, Kater AP.

Leukemia. 2019 Feb;33(2):390-402. doi: 10.1038/s41375-018-0215-9. Epub 2018 Jul 23.

PMID:
30038380
49.

Is Hepatectomy Justified for BRAF Mutant Colorectal Liver Metastases?: A Multi-institutional Analysis of 1497 Patients.

Gagnière J, Dupré A, Gholami SS, Pezet D, Boerner T, Gönen M, Kingham TP, Allen PJ, Balachandran VP, De Matteo RP, Drebin JA, Yaeger R, Kemeny NE, Jarnagin WR, D'Angelica MI.

Ann Surg. 2018 Jul 10. doi: 10.1097/SLA.0000000000002968. [Epub ahead of print]

PMID:
29995686
50.

Effectiveness of a multidisciplinary patient care bundle for reducing surgical-site infections.

Weiser MR, Gonen M, Usiak S, Pottinger T, Samedy P, Patel D, Seo S, Smith JJ, Guillem JG, Temple L, Nash GM, Paty PB, Baldwin-Medsker A, Cheavers CE, Eagan J, Garcia-Aguilar J; Memorial Sloan Kettering Multidisciplinary Surgical-Site Infection Reduction Team.

Br J Surg. 2018 Nov;105(12):1680-1687. doi: 10.1002/bjs.10896. Epub 2018 Jul 4.

PMID:
29974946

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