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Genomic investigation of Staphylococcus aureus recovered from Gambian women and newborns following an oral dose of intra-partum azithromycin.

Bojang A, Baines SL, Donovan L, Guerillot R, Stevens K, Higgs C, Bottomley C, Secka O, Schultz MB, Gonçalves da Silva A, Seemann T, Stinear TP, Roca A, Howden BP.

J Antimicrob Chemother. 2019 Nov 1;74(11):3170-3178. doi: 10.1093/jac/dkz341.


Genomics for Molecular Epidemiology and Detecting Transmission of Carbapenemase-Producing Enterobacterales in Victoria, Australia, 2012 to 2016.

Sherry NL, Lane CR, Kwong JC, Schultz M, Sait M, Stevens K, Ballard S, Gonçalves da Silva A, Seemann T, Gorrie CL, Stinear TP, Williamson DA, Brett J, van Diemen A, Easton M, Howden BP.

J Clin Microbiol. 2019 Aug 26;57(9). pii: e00573-19. doi: 10.1128/JCM.00573-19. Print 2019 Sep.


Emergence and divergence of major lineages of Shiga-toxin-producing Escherichia coli in Australia.

Ingle DJ, Gonçalves da Silva A, Valcanis M, Ballard SA, Seemann T, Jennison AV, Bastian I, Wise R, Kirk MD, Howden BP, Williamson DA.

Microb Genom. 2019 May;5(5). doi: 10.1099/mgen.0.000268. Epub 2019 May 20.


Pleistocene-dated biogeographic barriers drove divergence within the Australo-Papuan region in a sex-specific manner: an example in a widespread Australian songbird.

Lamb AM, Gonçalves da Silva A, Joseph L, Sunnucks P, Pavlova A.

Heredity (Edinb). 2019 Nov;123(5):608-621. doi: 10.1038/s41437-019-0206-2. Epub 2019 Mar 15.


Remodeling of pSK1 Family Plasmids and Enhanced Chlorhexidine Tolerance in a Dominant Hospital Lineage of Methicillin-Resistant Staphylococcus aureus.

Baines SL, Jensen SO, Firth N, Gonçalves da Silva A, Seemann T, Carter GP, Williamson DA, Howden BP, Stinear TP.

Antimicrob Agents Chemother. 2019 Apr 25;63(5). pii: e02356-18. doi: 10.1128/AAC.02356-18. Print 2019 May.


Persistent low avian malaria in a tropical species despite high community prevalence.

Eastwood JR, Peacock L, Hall ML, Roast M, Murphy SA, Gonçalves da Silva A, Peters A.

Int J Parasitol Parasites Wildl. 2019 Jan 11;8:88-93. doi: 10.1016/j.ijppaw.2019.01.001. eCollection 2019 Apr.


Reconstruction of the Genomes of Drug-Resistant Pathogens for Outbreak Investigation through Metagenomic Sequencing.

Mu A, Kwong JC, Isles NS, Gonçalves da Silva A, Schultz MB, Ballard SA, Lane CR, Carter GP, Williamson DA, Seemann T, Stinear TP, Howden BP.

mSphere. 2019 Jan 16;4(1). pii: e00529-18. doi: 10.1128/mSphere.00529-18.


Co-circulation of Multidrug-resistant Shigella Among Men Who Have Sex With Men in Australia.

Ingle DJ, Easton M, Valcanis M, Seemann T, Kwong JC, Stephens N, Carter GP, Gonçalves da Silva A, Adamopoulos J, Baines SL, Holt KE, Chow EPF, Fairley CK, Chen MY, Kirk MD, Howden BP, Williamson DA.

Clin Infect Dis. 2019 Oct 15;69(9):1535-1544. doi: 10.1093/cid/ciz005.


The changing landscape of vancomycin-resistant Enterococcus faecium in Australia: a population-level genomic study.

Lee RS, Gonçalves da Silva A, Baines SL, Strachan J, Ballard S, Carter GP, Kwong JC, Schultz MB, Bulach DM, Seemann T, Stinear TP, Howden BP.

J Antimicrob Chemother. 2018 Dec 1;73(12):3268-3278. doi: 10.1093/jac/dky331.


Global spread of three multidrug-resistant lineages of Staphylococcus epidermidis.

Lee JYH, Monk IR, Gonçalves da Silva A, Seemann T, Chua KYL, Kearns A, Hill R, Woodford N, Bartels MD, Strommenger B, Laurent F, Dodémont M, Deplano A, Patel R, Larsen AR, Korman TM, Stinear TP, Howden BP.

Nat Microbiol. 2018 Oct;3(10):1175-1185. doi: 10.1038/s41564-018-0230-7. Epub 2018 Sep 3.


Comprehensive antibiotic-linked mutation assessment by resistance mutation sequencing (RM-seq).

Guérillot R, Li L, Baines S, Howden B, Schultz MB, Seemann T, Monk I, Pidot SJ, Gao W, Giulieri S, Gonçalves da Silva A, D'Agata A, Tomita T, Peleg AY, Stinear TP, Howden BP.

Genome Med. 2018 Aug 31;10(1):63. doi: 10.1186/s13073-018-0572-z.


Genomic exploration of sequential clinical isolates reveals a distinctive molecular signature of persistent Staphylococcus aureus bacteraemia.

Giulieri SG, Baines SL, Guerillot R, Seemann T, Gonçalves da Silva A, Schultz M, Massey RC, Holmes NE, Stinear TP, Howden BP.

Genome Med. 2018 Aug 23;10(1):65. doi: 10.1186/s13073-018-0574-x.


Increasing tolerance of hospital Enterococcus faecium to handwash alcohols.

Pidot SJ, Gao W, Buultjens AH, Monk IR, Guerillot R, Carter GP, Lee JYH, Lam MMC, Grayson ML, Ballard SA, Mahony AA, Grabsch EA, Kotsanas D, Korman TM, Coombs GW, Robinson JO, Gonçalves da Silva A, Seemann T, Howden BP, Johnson PDR, Stinear TP.

Sci Transl Med. 2018 Aug 1;10(452). pii: eaar6115. doi: 10.1126/scitranslmed.aar6115.


The ΦBT1 large serine recombinase catalyzes DNA integration at pseudo-attB sites in the genus Nocardia.

Herisse M, Porter JL, Guerillot R, Tomita T, Goncalves Da Silva A, Seemann T, Howden BP, Stinear TP, Pidot SJ.

PeerJ. 2018 May 4;6:e4784. doi: 10.7717/peerj.4784. eCollection 2018.


Interaction of Hydrophobic Ionic Liquids with Lipids in Langmuir Monolayers.

Gonçalves da Silva AMPS.

Langmuir. 2018 Apr 3;34(13):3797-3805. doi: 10.1021/acs.langmuir.7b04164. Epub 2018 Mar 20.


Convergent Evolution Driven by Rifampin Exacerbates the Global Burden of Drug-Resistant Staphylococcus aureus.

Guérillot R, Gonçalves da Silva A, Monk I, Giulieri S, Tomita T, Alison E, Porter J, Pidot S, Gao W, Peleg AY, Seemann T, Stinear TP, Howden BP.

mSphere. 2018 Jan 24;3(1). pii: e00550-17. doi: 10.1128/mSphere.00550-17. eCollection 2018 Jan-Feb.


Translating genomics into practice for real-time surveillance and response to carbapenemase-producing Enterobacteriaceae: evidence from a complex multi-institutional KPC outbreak.

Kwong JC, Lane CR, Romanes F, Gonçalves da Silva A, Easton M, Cronin K, Waters MJ, Tomita T, Stevens K, Schultz MB, Baines SL, Sherry NL, Carter GP, Mu A, Sait M, Ballard SA, Seemann T, Stinear TP, Howden BP.

PeerJ. 2018 Jan 3;6:e4210. doi: 10.7717/peerj.4210. eCollection 2018.


Topical Antibiotic Use Coselects for the Carriage of Mobile Genetic Elements Conferring Resistance to Unrelated Antimicrobials in Staphylococcus aureus.

Carter GP, Schultz MB, Baines SL, Gonçalves da Silva A, Heffernan H, Tiong A, Pham PH, Monk IR, Stinear TP, Howden BP, Williamson DA.

Antimicrob Agents Chemother. 2018 Jan 25;62(2). pii: e02000-17. doi: 10.1128/AAC.02000-17. Print 2018 Feb.


Genomic epidemiology and antimicrobial resistance of Neisseria gonorrhoeae in New Zealand.

Lee RS, Seemann T, Heffernan H, Kwong JC, Gonçalves da Silva A, Carter GP, Woodhouse R, Dyet KH, Bulach DM, Stinear TP, Howden BP, Williamson DA.

J Antimicrob Chemother. 2018 Feb 1;73(2):353-364. doi: 10.1093/jac/dkx405.


A Supervised Statistical Learning Approach for Accurate Legionella pneumophila Source Attribution during Outbreaks.

Buultjens AH, Chua KYL, Baines SL, Kwong J, Gao W, Cutcher Z, Adcock S, Ballard S, Schultz MB, Tomita T, Subasinghe N, Carter GP, Pidot SJ, Franklin L, Seemann T, Gonçalves Da Silva A, Howden BP, Stinear TP.

Appl Environ Microbiol. 2017 Oct 17;83(21). pii: e01482-17. doi: 10.1128/AEM.01482-17. Print 2017 Nov 1.


Target-Specific Assay for Rapid and Quantitative Detection of Mycobacterium chimaera DNA.

Zozaya-Valdés E, Porter JL, Coventry J, Fyfe JAM, Carter GP, Gonçalves da Silva A, Schultz MB, Seemann T, Johnson PDR, Stewardson AJ, Bastian I, Roberts SA, Howden BP, Williamson DA, Stinear TP.

J Clin Microbiol. 2017 Jun;55(6):1847-1856. doi: 10.1128/JCM.00197-17. Epub 2017 Apr 5.


A phylogenomic framework for assessing the global emergence and evolution of clonal complex 398 methicillin-resistant Staphylococcus aureus.

Gonçalves da Silva A, Baines SL, Carter GP, Heffernan H, French NP, Ren X, Seemann T, Bulach D, Kwong J, Stinear TP, Howden BP, Williamson DA.

Microb Genom. 2017 Jan 31;3(1):e000105. doi: 10.1099/mgen.0.000105. eCollection 2017 Jan.


NGMASTER:in silico multi-antigen sequence typing for Neisseria gonorrhoeae.

Kwong JC, Gonçalves da Silva A, Dyet K, Williamson DA, Stinear TP, Howden BP, Seemann T.

Microb Genom. 2016 Aug 25;2(8):e000076. doi: 10.1099/mgen.0.000076. eCollection 2016 Aug.


Genomic analysis of ST88 community-acquired methicillin resistant Staphylococcus aureus in Ghana.

Kpeli G, Buultjens AH, Giulieri S, Owusu-Mireku E, Aboagye SY, Baines SL, Seemann T, Bulach D, Gonçalves da Silva A, Monk IR, Howden BP, Pluschke G, Yeboah-Manu D, Stinear T.

PeerJ. 2017 Feb 28;5:e3047. doi: 10.7717/peerj.3047. eCollection 2017.


Discovery of Streptococcus pneumoniae serogroup 35 variants in Australian patients.

Staples M, Graham RMA, Hicks V, Strachan J, Gonçalves da Silva A, Peverall J, Wicks V, Jennison AV.

Clin Microbiol Infect. 2017 Jul;23(7):476-479. doi: 10.1016/j.cmi.2016.12.029. Epub 2017 Jan 3.


Scope for genetic rescue of an endangered subspecies though re-establishing natural gene flow with another subspecies.

Harrisson KA, Pavlova A, Gonçalves da Silva A, Rose R, Bull JK, Lancaster ML, Murray N, Quin B, Menkhorst P, Magrath MJ, Sunnucks P.

Mol Ecol. 2016 Mar;25(6):1242-58. doi: 10.1111/mec.13547.


Radiation damage on Langmuir monolayers of the anionic 1.2-dipalmitoyl-sn-glycero-3-[phospho-rac-(1-glycerol)] (sodium salt)(DPPG) phospholipid at the air-DNA solution interface.

Gomes PJ, Gonçalves da Silva AM, Ribeiro PA, Oliveira ON Jr, Raposo M.

Mater Sci Eng C Mater Biol Appl. 2016 Jan 1;58:576-9. doi: 10.1016/j.msec.2015.09.017. Epub 2015 Sep 7.


Interaction of Cytotoxic and Cytoprotective Bile Acids with Model Membranes: Influence of the Membrane Composition.

Esteves M, Ferreira MJ, Kozica A, Fernandes AC, Gonçalves da Silva A, Saramago B.

Langmuir. 2015 Aug 18;31(32):8901-10. doi: 10.1021/acs.langmuir.5b01702. Epub 2015 Aug 6.


Ionic Liquid Films at the Water-Air Interface: Langmuir Isotherms of Tetra-alkylphosphonium-Based Ionic Liquids.

Shimizu K, Canongia Lopes JN, Gonçalves da Silva AM.

Langmuir. 2015 Aug 4;31(30):8371-8. doi: 10.1021/acs.langmuir.5b01977. Epub 2015 Jul 23.


Shared genetic diversity across the global invasive range of the monk parakeet suggests a common restricted geographic origin and the possibility of convergent selection.

Edelaar P, Roques S, Hobson EA, Gonçalves da Silva A, Avery ML, Russello MA, Senar JC, Wright TF, Carrete M, Tella JL.

Mol Ecol. 2015 May;24(9):2164-76. doi: 10.1111/mec.13157. Epub 2015 Apr 15.


Establishing the evolutionary compatibility of potential sources of colonizers for overfished stocks: a population genomics approach.

Gonçalves da Silva A, Appleyard SA, Upston J.

Mol Ecol. 2015 Feb;24(3):564-79. doi: 10.1111/mec.13046.


SNP discovery in nonmodel organisms: strand bias and base-substitution errors reduce conversion rates.

Gonçalves da Silva A, Barendse W, Kijas JW, Barris WC, McWilliam S, Bunch RJ, McCullough R, Harrison B, Hoelzel AR, England PR.

Mol Ecol Resour. 2015 Jul;15(4):723-36. doi: 10.1111/1755-0998.12343. Epub 2014 Nov 23.


Kinship and social behavior of lowland tapirs (Tapirus terrestris) in a central Amazon landscape.

Pinho GM, Gonçalves da Silva A, Hrbek T, Venticinque EM, Farias IP.

PLoS One. 2014 Mar 26;9(3):e92507. doi: 10.1371/journal.pone.0092507. eCollection 2014.


Influence of intracellular membrane pH on sphingolipid organization and membrane biophysical properties.

Varela AR, Gonçalves da Silva AM, Fedorov A, Futerman AH, Prieto M, Silva LC.

Langmuir. 2014 Apr 15;30(14):4094-104. doi: 10.1021/la5003397. Epub 2014 Apr 4.


Human hemorrhagic pulmonary leptospirosis: pathological findings and pathophysiological correlations.

De Brito T, Aiello VD, da Silva LF, Gonçalves da Silva AM, Ferreira da Silva WL, Castelli JB, Seguro AC.

PLoS One. 2013 Aug 12;8(8):e71743. doi: 10.1371/journal.pone.0071743. eCollection 2013. Erratum in: PLoS One. 2013;8(9). doi:10.1371/annotation/af645b13-6dbb-4327-8e78-021ea552106a.


On tapir ecology, evolution and conservation: what we know and future perspectives-part II.

Gonçalves DA Silva A, Campos-Arceiz A, Zavada MS.

Integr Zool. 2013 Mar;8(1):1-3. doi: 10.1111/1749-4877.12040. No abstract available.


On tapir ecology, evolution and conservation: what we know and future perspectives-part I.

Gonçalves DA Silva A, Campos-Arceiz A, Zavada MS.

Integr Zool. 2012 Dec;7(4):329-330. doi: 10.1111/1749-4877.12015. No abstract available.


Effect of glucosylceramide on the biophysical properties of fluid membranes.

Varela AR, Gonçalves da Silva AM, Fedorov A, Futerman AH, Prieto M, Silva LC.

Biochim Biophys Acta. 2013 Mar;1828(3):1122-30. doi: 10.1016/j.bbamem.2012.11.018. Epub 2012 Nov 27.


Gene flow networks among American Aedes aegypti populations.

Gonçalves da Silva A, Cunha IC, Santos WS, Luz SL, Ribolla PE, Abad-Franch F.

Evol Appl. 2012 Nov;5(7):664-76. doi: 10.1111/j.1752-4571.2012.00244.x.


Microphase separation in mixed monolayers of DPPG with a double hydrophilic block copolymer at the air-water interface: a BAM, LSCFM, and AFM study.

Romão RI, Ferreira Q, Morgado J, Martinho JM, Gonçalves da Silva AM.

Langmuir. 2010 Nov 16;26(22):17165-77. doi: 10.1021/la103029d. Epub 2010 Oct 21.


Genetic evidence for high propagule pressure and long-distance dispersal in monk parakeet (Myiopsitta monachus) invasive populations.

Gonçalves da Silva A, Eberhard JR, Wright TF, Avery ML, Russello MA.

Mol Ecol. 2010 Aug;19(16):3336-50. doi: 10.1111/j.1365-294X.2010.04749.x. Epub 2010 Jul 26.


Phase behaviour of oleanolic acid, pure and mixed with stearic acid: Interactions and crystallinity.

Teixeira AC, Garcia AR, Ilharco LM, Gonçalves da Silva AM, Fernandes AC.

Chem Phys Lipids. 2010 Sep;163(7):655-66. doi: 10.1016/j.chemphyslip.2010.06.001. Epub 2010 Jun 19.


Genetic approaches refine ex situ lowland tapir (Tapirus terrestris) conservation.

Gonçalves da Silva A, Lalonde DR, Quse V, Shoemaker A, Russello MA.

J Hered. 2010 Sep-Oct;101(5):581-90. doi: 10.1093/jhered/esq055. Epub 2010 May 19.


Schizophrenic behavior of a thermoresponsive double hydrophilic diblock copolymer at the air-water interface.

Romão RI, Beija M, Charreyre MT, Farinha JP, Gonçalves da Silva AM, Martinho JM.

Langmuir. 2010 Feb 2;26(3):1807-15. doi: 10.1021/la902510q.


Phase behaviour of oleanolic acid/stearyl stearate binary mixtures in bulk and at the air-water interface.

Teixeira AC, Garcia AR, Ilharco LM, Gonçalves da Silva AM, Fernandes AC.

Chem Phys Lipids. 2009 Jul;160(1):45-57. doi: 10.1016/j.chemphyslip.2009.04.001. Epub 2009 Apr 24.


Thermo-responsiveness of poly(N,N-diethylacrylamide) polymers at the air-water interface: The effect of a hydrophobic block.

Gonçalves da Silva AM, Lopes SI, Brogueira P, Prazeres TJ, Beija M, Martinho JM.

J Colloid Interface Sci. 2008 Nov 1;327(1):129-37. doi: 10.1016/j.jcis.2008.08.011. Epub 2008 Aug 9.


Phase behaviour of binary mixtures involving tristearin, stearyl stearate and stearic acid: thermodynamic study and BAM observation at the air-water interface and AFM analysis of LB films.

Teixeira AC, Brogueira P, Fernandes AC, Gonçalves da Silva AM.

Chem Phys Lipids. 2008 Jun;153(2):98-108. doi: 10.1016/j.chemphyslip.2008.03.006. Epub 2008 Mar 22.


Microdomains in mixed monolayers of oleanolic and stearic acids: thermodynamic study and BAM observation at the air-water interface and AFM and FTIR analysis of LB monolayers.

Teixeira AC, Fernandes AC, Garcia AR, Ilharco LM, Brogueira P, Gonçalves da Silva AM.

Chem Phys Lipids. 2007 Sep-Oct;149(1-2):1-13. Epub 2007 May 17.


Phase behaviour of stearic acid-stearonitrile mixtures. A thermodynamic study in bulk and at the air-water interface.

Teixeira AC, Gonçalves da Silva AM, Fernandes AC.

Chem Phys Lipids. 2006 Nov-Dec;144(2):160-71. Epub 2006 Sep 26.


Stem cell apoptosis in HIV-1 alopecia.

Barcaui CB, Gonçalves da Silva AM, Sotto MN, Genser B.

J Cutan Pathol. 2006 Oct;33(10):667-71.


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