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Cyclic-di-GMP-mediated regulation of gene transfer and motility in Rhodobacter capsulatus.

Pallegar P, Peña-Castillo L, Langille E, Gomelsky M, Lang AS.

J Bacteriol. 2019 Oct 28. pii: JB.00554-19. doi: 10.1128/JB.00554-19. [Epub ahead of print]


Inducible asymmetric cell division and cell differentiation in a bacterium.

Mushnikov NV, Fomicheva A, Gomelsky M, Bowman GR.

Nat Chem Biol. 2019 Sep;15(9):925-931. doi: 10.1038/s41589-019-0340-4. Epub 2019 Aug 12.


Engineering Adenylate Cyclase Activated by Near-Infrared Window Light for Mammalian Optogenetic Applications.

Fomicheva A, Zhou C, Sun QQ, Gomelsky M.

ACS Synth Biol. 2019 Jun 21;8(6):1314-1324. doi: 10.1021/acssynbio.8b00528. Epub 2019 Jun 10.


Signaling specificity in the c-di-GMP-dependent network regulating antibiotic synthesis in Lysobacter.

Xu G, Han S, Huo C, Chin KH, Chou SH, Gomelsky M, Qian G, Liu F.

Nucleic Acids Res. 2018 Oct 12;46(18):9276-9288. doi: 10.1093/nar/gky803.


Positive and Negative Regulation of Glycerol Utilization by the c-di-GMP Binding Protein PlzA in Borrelia burgdorferi.

Zhang JJ, Chen T, Yang Y, Du J, Li H, Troxell B, He M, Carrasco SE, Gomelsky M, Yang XF.

J Bacteriol. 2018 Oct 23;200(22). pii: e00243-18. doi: 10.1128/JB.00243-18. Print 2018 Nov 15.


Biofilm formation - what we can learn from recent developments.

Bjarnsholt T, Buhlin K, Dufrêne YF, Gomelsky M, Moroni A, Ramstedt M, Rumbaugh KP, Schulte T, Sun L, Åkerlund B, Römling U.

J Intern Med. 2018 Oct;284(4):332-345. doi: 10.1111/joim.12782. Epub 2018 Jul 9.


Codon optimization and improved delivery/immunization regimen enhance the immune response against wild-type and drug-resistant HIV-1 reverse transcriptase, preserving its Th2-polarity.

Latanova AA, Petkov S, Kilpelainen A, Jansons J, Latyshev OE, Kuzmenko YV, Hinkula J, Abakumov MA, Valuev-Elliston VT, Gomelsky M, Karpov VL, Chiodi F, Wahren B, Logunov DY, Starodubova ES, Isaguliants MG.

Sci Rep. 2018 May 24;8(1):8078. doi: 10.1038/s41598-018-26281-z.


CodY-Mediated c-di-GMP-Dependent Inhibition of Mammalian Cell Invasion in Listeria monocytogenes.

Elbakush AM, Miller KW, Gomelsky M.

J Bacteriol. 2018 Feb 7;200(5). pii: e00457-17. doi: 10.1128/JB.00457-17. Print 2018 Mar 1.


Using Light-Activated Enzymes for Modulating Intracellular c-di-GMP Levels in Bacteria.

Ryu MH, Fomicheva A, O'Neal L, Alexandre G, Gomelsky M.

Methods Mol Biol. 2017;1657:169-186. doi: 10.1007/978-1-4939-7240-1_14.


Identification of bacterial guanylate cyclases.

Ryu MH, Youn H, Kang IH, Gomelsky M.

Proteins. 2017 Jun;85(6):1178. doi: 10.1002/prot.25308. Epub 2017 May 4. No abstract available.


Photoactivated cells link diagnosis and therapy.

Gomelsky M.

Sci Transl Med. 2017 Apr 26;9(387). pii: eaan3936. doi: 10.1126/scitranslmed.aan3936. Review.


Optogenetic Module for Dichromatic Control of c-di-GMP Signaling.

Ryu MH, Fomicheva A, Moskvin OV, Gomelsky M.

J Bacteriol. 2017 Aug 22;199(18). pii: e00014-17. doi: 10.1128/JB.00014-17. Print 2017 Sep 15.


Optogenetic Manipulation of Cyclic Di-GMP (c-di-GMP) Levels Reveals the Role of c-di-GMP in Regulating Aerotaxis Receptor Activity in Azospirillum brasilense.

O'Neal L, Ryu MH, Gomelsky M, Alexandre G.

J Bacteriol. 2017 Aug 22;199(18). pii: e00020-17. doi: 10.1128/JB.00020-17. Print 2017 Sep 15.


Lysobacter PilR, the Regulator of Type IV Pilus Synthesis, Controls Antifungal Antibiotic Production via a Cyclic di-GMP Pathway.

Chen Y, Xia J, Su Z, Xu G, Gomelsky M, Qian G, Liu F.

Appl Environ Microbiol. 2017 Mar 17;83(7). pii: e03397-16. doi: 10.1128/AEM.03397-16. Print 2017 Apr 1.


Systematic Nomenclature for GGDEF and EAL Domain-Containing Cyclic Di-GMP Turnover Proteins of Escherichia coli.

Hengge R, Galperin MY, Ghigo JM, Gomelsky M, Green J, Hughes KT, Jenal U, Landini P.

J Bacteriol. 2015 Jul 6;198(1):7-11. doi: 10.1128/JB.00424-15. Print 2016 Jan 1.


Listeria monocytogenes exopolysaccharide: origin, structure, biosynthetic machinery and c-di-GMP-dependent regulation.

Köseoğlu VK, Heiss C, Azadi P, Topchiy E, Güvener ZT, Lehmann TE, Miller KW, Gomelsky M.

Mol Microbiol. 2015 May;96(4):728-43. doi: 10.1111/mmi.12966. Epub 2015 Mar 11.


Identification of bacterial guanylate cyclases.

Ryu MH, Youn H, Kang IH, Gomelsky M.

Proteins. 2015 May;83(5):799-804. doi: 10.1002/prot.24769. Epub 2015 Feb 9. Erratum in: Proteins. 2017 Jun;85(6):1178.


Fifty ways to inhibit motility via cyclic di-GMP: the emerging Pseudomonas aeruginosa swarming story.

McCarter LL, Gomelsky M.

J Bacteriol. 2015 Feb;197(3):406-9. doi: 10.1128/JB.02483-14. Epub 2014 Dec 1.


Special issue on synthetic photobiology.

Gomelsky M.

ACS Synth Biol. 2014 Nov 21;3(11):780-1. doi: 10.1021/sb500350t. No abstract available.


Cyclic di-GMP-dependent signaling pathways in the pathogenic Firmicute Listeria monocytogenes.

Chen LH, Köseoğlu VK, Güvener ZT, Myers-Morales T, Reed JM, D'Orazio SE, Miller KW, Gomelsky M.

PLoS Pathog. 2014 Aug 7;10(8):e1004301. doi: 10.1371/journal.ppat.1004301. eCollection 2014 Aug.


Engineering adenylate cyclases regulated by near-infrared window light.

Ryu MH, Kang IH, Nelson MD, Jensen TM, Lyuksyutova AI, Siltberg-Liberles J, Raizen DM, Gomelsky M.

Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):10167-72. doi: 10.1073/pnas.1324301111. Epub 2014 Jun 30.


GIL, a new c-di-GMP-binding protein domain involved in regulation of cellulose synthesis in enterobacteria.

Fang X, Ahmad I, Blanka A, Schottkowski M, Cimdins A, Galperin MY, Römling U, Gomelsky M.

Mol Microbiol. 2014 Aug;93(3):439-52. doi: 10.1111/mmi.12672. Epub 2014 Jul 1.


Near-infrared light responsive synthetic c-di-GMP module for optogenetic applications.

Ryu MH, Gomelsky M.

ACS Synth Biol. 2014 Nov 21;3(11):802-10. doi: 10.1021/sb400182x. Epub 2014 Jan 28.


DhhP, a cyclic di-AMP phosphodiesterase of Borrelia burgdorferi, is essential for cell growth and virulence.

Ye M, Zhang JJ, Fang X, Lawlis GB, Troxell B, Zhou Y, Gomelsky M, Lou Y, Yang XF.

Infect Immun. 2014 May;82(5):1840-9. doi: 10.1128/IAI.00030-14. Epub 2014 Feb 24.


Altered residues in key proteins influence the expression and activity of the nitrogenase complex in an adaptive CO2 fixation-deficient mutant strain of Rhodobacter sphaeroides.

Farmer RM, Laguna R, Panescu J, McCoy A, Logsdon B, Zianni M, Moskvin OV, Gomelsky M, Tabita FR.

Microbiology. 2014 Jan;160(Pt 1):198-208. doi: 10.1099/mic.0.073031-0. Epub 2013 Oct 14.


Bacterial second messengers, cGMP and c-di-GMP, in a quest for regulatory dominance.

Gomelsky M, Galperin MY.

EMBO J. 2013 Sep 11;32(18):2421-3. doi: 10.1038/emboj.2013.193. Epub 2013 Aug 20. No abstract available.


A zinc lock on GGDEF domain dimerization inhibits E. coli biofilms.

Gomelsky M.

Structure. 2013 Jul 2;21(7):1067-8. doi: 10.1016/j.str.2013.06.011.


c-di-GMP signaling regulates E. coli O157:H7 adhesion to colonic epithelium.

Hu J, Wang B, Fang X, Means WJ, McCormick RJ, Gomelsky M, Zhu MJ.

Vet Microbiol. 2013 Jun 28;164(3-4):344-51. doi: 10.1016/j.vetmic.2013.02.023. Epub 2013 Mar 4.


Integration of the second messenger c-di-GMP into the chemotactic signaling pathway.

Russell MH, Bible AN, Fang X, Gooding JR, Campagna SR, Gomelsky M, Alexandre G.

MBio. 2013 Mar 19;4(2):e00001-13. doi: 10.1128/mBio.00001-13.


Cyclic di-GMP: the first 25 years of a universal bacterial second messenger.

Römling U, Galperin MY, Gomelsky M.

Microbiol Mol Biol Rev. 2013 Mar;77(1):1-52. doi: 10.1128/MMBR.00043-12. Review.


The c-di-GMP phosphodiesterase VmpA absent in Escherichia coli K12 strains affects motility and biofilm formation in the enterohemorrhagic O157:H7 serotype.

Branchu P, Hindré T, Fang X, Thomas R, Gomelsky M, Claret L, Harel J, Gobert AP, Martin C.

Vet Immunol Immunopathol. 2013 Mar 15;152(1-2):132-40. doi: 10.1016/j.vetimm.2012.09.029. Epub 2012 Sep 26.


Cyclic Di-GMP phosphodiesterases RmdA and RmdB are involved in regulating colony morphology and development in Streptomyces coelicolor.

Hull TD, Ryu MH, Sullivan MJ, Johnson RC, Klena NT, Geiger RM, Gomelsky M, Bennett JA.

J Bacteriol. 2012 Sep;194(17):4642-51. doi: 10.1128/JB.00157-12. Epub 2012 Jun 29.


Discrete cyclic di-GMP-dependent control of bacterial predation versus axenic growth in Bdellovibrio bacteriovorus.

Hobley L, Fung RK, Lambert C, Harris MA, Dabhi JM, King SS, Basford SM, Uchida K, Till R, Ahmad R, Aizawa S, Gomelsky M, Sockett RE.

PLoS Pathog. 2012 Feb;8(2):e1002493. doi: 10.1371/journal.ppat.1002493. Epub 2012 Feb 2.


Cyclic dimeric GMP-mediated decisions in surface-grown Vibrio parahaemolyticus: a different kind of motile-to-sessile transition.

Gomelsky M.

J Bacteriol. 2012 Mar;194(5):911-3. doi: 10.1128/JB.06695-11. Epub 2011 Dec 22. No abstract available.


Regulation of biofilm components in Salmonella enterica serovar Typhimurium by lytic transglycosylases involved in cell wall turnover.

Monteiro C, Fang X, Ahmad I, Gomelsky M, Römling U.

J Bacteriol. 2011 Dec;193(23):6443-51. doi: 10.1128/JB.00425-11. Epub 2011 Sep 30.


Salt stress-induced changes in the transcriptome, compatible solutes, and membrane lipids in the facultatively phototrophic bacterium Rhodobacter sphaeroides.

Tsuzuki M, Moskvin OV, Kuribayashi M, Sato K, Retamal S, Abo M, Zeilstra-Ryalls J, Gomelsky M.

Appl Environ Microbiol. 2011 Nov;77(21):7551-9. doi: 10.1128/AEM.05463-11. Epub 2011 Sep 9.


Cyclic di-GMP is essential for the survival of the lyme disease spirochete in ticks.

He M, Ouyang Z, Troxell B, Xu H, Moh A, Piesman J, Norgard MV, Gomelsky M, Yang XF.

PLoS Pathog. 2011 Jun;7(6):e1002133. doi: 10.1371/journal.ppat.1002133. Epub 2011 Jun 30.


Light helps bacteria make important lifestyle decisions.

Gomelsky M, Hoff WD.

Trends Microbiol. 2011 Sep;19(9):441-8. doi: 10.1016/j.tim.2011.05.002. Epub 2011 Jun 12. Review.


Biology and data-intensive scientific discovery in the beginning of the 21st century.

Smith A, Balazinska M, Baru C, Gomelsky M, McLennan M, Rose L, Smith B, Stewart E, Kolker E.

OMICS. 2011 Apr;15(4):209-12. doi: 10.1089/omi.2011.0006.


cAMP, c-di-GMP, c-di-AMP and now cGMP: bacteria use them all!

Gomelsky M.

Mol Microbiol. 2011 Feb;79(3):562-5. doi: 10.1111/j.1365-2958.2010.07514.x. Epub 2011 Jan 5. No abstract available.


Systematic analysis of cyclic di-GMP signalling enzymes and their role in biofilm formation and virulence in Yersinia pestis.

Bobrov AG, Kirillina O, Ryjenkov DA, Waters CM, Price PA, Fetherston JD, Mack D, Goldman WE, Gomelsky M, Perry RD.

Mol Microbiol. 2011 Jan;79(2):533-51. doi: 10.1111/j.1365-2958.2010.07470.x. Epub 2010 Dec 3.


Rhodobase, a meta-analytical tool for reconstructing gene regulatory networks in a model photosynthetic bacterium.

Moskvin OV, Bolotin D, Wang A, Ivanov PS, Gomelsky M.

Biosystems. 2011 Feb;103(2):125-31. doi: 10.1016/j.biosystems.2010.10.017. Epub 2010 Nov 9.


Natural and engineered photoactivated nucleotidyl cyclases for optogenetic applications.

Ryu MH, Moskvin OV, Siltberg-Liberles J, Gomelsky M.

J Biol Chem. 2010 Dec 31;285(53):41501-8. doi: 10.1074/jbc.M110.177600. Epub 2010 Oct 28.


The PpaA/AerR regulators of photosynthesis gene expression from anoxygenic phototrophic proteobacteria contain heme-binding SCHIC domains.

Moskvin OV, Gilles-Gonzalez MA, Gomelsky M.

J Bacteriol. 2010 Oct;192(19):5253-6. doi: 10.1128/JB.00736-10. Epub 2010 Jul 30.


A post-translational, c-di-GMP-dependent mechanism regulating flagellar motility.

Fang X, Gomelsky M.

Mol Microbiol. 2010 Jun 1;76(5):1295-305. doi: 10.1111/j.1365-2958.2010.07179.x. Epub 2010 Apr 23.


Cyclic-di-GMP-binding CRP-like protein: a spectacular new role for a veteran signal transduction actor.

Gomelsky M.

J Bacteriol. 2009 Nov;191(22):6785-7. doi: 10.1128/JB.01173-09. Epub 2009 Sep 11. No abstract available.


Structure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase.

Barends TR, Hartmann E, Griese JJ, Beitlich T, Kirienko NV, Ryjenkov DA, Reinstein J, Shoeman RL, Gomelsky M, Schlichting I.

Nature. 2009 Jun 18;459(7249):1015-8. doi: 10.1038/nature07966.


Hierarchical regulation of photosynthesis gene expression by the oxygen-responsive PrrBA and AppA-PpsR systems of Rhodobacter sphaeroides.

Gomelsky L, Moskvin OV, Stenzel RA, Jones DF, Donohue TJ, Gomelsky M.

J Bacteriol. 2008 Dec;190(24):8106-14. doi: 10.1128/JB.01094-08. Epub 2008 Oct 17.


A staphylococcal GGDEF domain protein regulates biofilm formation independently of cyclic dimeric GMP.

Holland LM, O'Donnell ST, Ryjenkov DA, Gomelsky L, Slater SR, Fey PD, Gomelsky M, O'Gara JP.

J Bacteriol. 2008 Aug;190(15):5178-89. doi: 10.1128/JB.00375-08. Epub 2008 May 23.


The flagellar sigma factor FliA regulates adhesion and invasion of Crohn disease-associated Escherichia coli via a cyclic dimeric GMP-dependent pathway.

Claret L, Miquel S, Vieille N, Ryjenkov DA, Gomelsky M, Darfeuille-Michaud A.

J Biol Chem. 2007 Nov 16;282(46):33275-83. Epub 2007 Sep 7.

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