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Items: 1 to 50 of 195

1.

Serine 51 residue of Citrobacter freundii tyrosine phenol-lyase assists in C-α-proton abstraction and transfer in the reaction with substrate.

Barbolina MV, Kulikova VV, Tsvetikova MA, Anufrieva NV, Revtovich SV, Phillips RS, Gollnick PD, Demidkina TV, Faleev NG.

Biochimie. 2018 Apr;147:63-69. doi: 10.1016/j.biochi.2017.11.016. Epub 2017 Nov 26.

PMID:
29183854
2.

Cleavage of 3'-terminal adenosine by archaeal ATP-dependent RNA ligase.

Yoshinari S, Liu Y, Gollnick P, Ho CK.

Sci Rep. 2017 Sep 14;7(1):11662. doi: 10.1038/s41598-017-11693-0.

3.

Mechanistic Models Fit to Variable Temperature Calorimetric Data Provide Insights into Cooperativity.

Ihms EC, Kleckner IR, Gollnick P, Foster MP.

Biophys J. 2017 Apr 11;112(7):1328-1338. doi: 10.1016/j.bpj.2017.02.031.

4.

Identification of a Residue (Glu60) in TRAP Required for Inducing Efficient Transcription Termination at the trp Attenuator Independent of Binding Tryptophan and RNA.

McAdams NM, Patterson A, Gollnick P.

J Bacteriol. 2017 Feb 28;199(6). pii: e00710-16. doi: 10.1128/JB.00710-16. Print 2017 Mar 15.

5.

Nucleoside Triphosphate Phosphohydrolase I (NPH I) Functions as a 5' to 3' Translocase in Transcription Termination of Vaccinia Early Genes.

Hindman R, Gollnick P.

J Biol Chem. 2016 Jul 8;291(28):14826-38. doi: 10.1074/jbc.M116.730135. Epub 2016 May 6.

6.

Structural and mutational analysis of archaeal ATP-dependent RNA ligase identifies amino acids required for RNA binding and catalysis.

Gu H, Yoshinari S, Ghosh R, Ignatochkina AV, Gollnick PD, Murakami KS, Ho CK.

Nucleic Acids Res. 2016 Mar 18;44(5):2337-47. doi: 10.1093/nar/gkw094. Epub 2016 Feb 20.

7.

Biochemical analysis of the multifunctional vaccinia mRNA capping enzyme encoded by a temperature sensitive virus mutant.

Tate J, Boldt RL, McFadden BD, D'Costa SM, Lewandowski NM, Shatzer AN, Gollnick P, Condit RC.

Virology. 2016 Jan;487:27-40. doi: 10.1016/j.virol.2015.10.011. Epub 2015 Oct 20.

8.

Solution NMR Experiment for Measurement of (15)N-(1)H Residual Dipolar Couplings in Large Proteins and Supramolecular Complexes.

Eletsky A, Pulavarti SV, Beaumont V, Gollnick P, Szyperski T.

J Am Chem Soc. 2015 Sep 9;137(35):11242-5. doi: 10.1021/jacs.5b07010. Epub 2015 Aug 27.

9.

The role of vaccinia termination factor and cis-acting elements in vaccinia virus early gene transcription termination.

Tate J, Gollnick P.

Virology. 2015 Nov;485:179-88. doi: 10.1016/j.virol.2015.05.008. Epub 2015 Aug 14.

10.

APOBEC3A cytidine deaminase induces RNA editing in monocytes and macrophages.

Sharma S, Patnaik SK, Taggart RT, Kannisto ED, Enriquez SM, Gollnick P, Baysal BE.

Nat Commun. 2015 Apr 21;6:6881. doi: 10.1038/ncomms7881.

11.
12.

Modulating TRAP-mediated transcription termination by AT during transcription of the leader region of the Bacillus subtilis trp operon.

Sharma S, Gollnick P.

Nucleic Acids Res. 2014 May;42(9):5543-55. doi: 10.1093/nar/gku211. Epub 2014 Mar 20.

13.

Gene regulation by substoichiometric heterocomplex formation of undecameric TRAP and trimeric anti-TRAP.

Ihms EC, Zhou M, Zhang Y, Kleckner IR, McElroy CA, Wysocki VH, Gollnick P, Foster MP.

Proc Natl Acad Sci U S A. 2014 Mar 4;111(9):3442-7. doi: 10.1073/pnas.1315281111. Epub 2014 Feb 18.

14.
15.

Homotropic cooperativity from the activation pathway of the allosteric ligand-responsive regulatory trp RNA-binding attenuation protein.

Kleckner IR, McElroy CA, Kuzmic P, Gollnick P, Foster MP.

Biochemistry. 2013 Dec 10;52(49):8855-65. doi: 10.1021/bi401364v. Epub 2013 Nov 22.

16.

Trp RNA-binding attenuation protein: modifying symmetry and stability of a circular oligomer.

Bayfield OW, Chen CS, Patterson AR, Luan W, Smits C, Gollnick P, Antson AA.

PLoS One. 2012;7(9):e44309. doi: 10.1371/journal.pone.0044309. Epub 2012 Sep 6.

17.

Mechanisms of allosteric gene regulation by NMR quantification of microsecond-millisecond protein dynamics.

Kleckner IR, Gollnick P, Foster MP.

J Mol Biol. 2012 Jan 13;415(2):372-81. doi: 10.1016/j.jmb.2011.11.019. Epub 2011 Nov 15.

18.

Role of forward translocation in nucleoside triphosphate phosphohydrolase I (NPH I)-mediated transcription termination of vaccinia virus early genes.

Tate J, Gollnick P.

J Biol Chem. 2011 Dec 30;286(52):44764-75. doi: 10.1074/jbc.M111.263822. Epub 2011 Nov 7.

19.

How to change the oligomeric state of a circular protein assembly: switch from 11-subunit to 12-subunit TRAP suggests a general mechanism.

Chen CS, Smits C, Dodson GG, Shevtsov MB, Merlino N, Gollnick P, Antson AA.

PLoS One. 2011;6(10):e25296. doi: 10.1371/journal.pone.0025296. Epub 2011 Oct 3.

20.

TRAP binding to the Bacillus subtilis trp leader region RNA causes efficient transcription termination at a weak intrinsic terminator.

Potter KD, Merlino NM, Jacobs T, Gollnick P.

Nucleic Acids Res. 2011 Mar;39(6):2092-102. doi: 10.1093/nar/gkq965. Epub 2010 Nov 21.

21.

Mechanism for pH-dependent gene regulation by amino-terminus-mediated homooligomerization of Bacillus subtilis anti-trp RNA-binding attenuation protein.

Sachleben JR, McElroy CA, Gollnick P, Foster MP.

Proc Natl Acad Sci U S A. 2010 Aug 31;107(35):15385-90. doi: 10.1073/pnas.1004981107. Epub 2010 Aug 16.

22.

Bacillus licheniformis Anti-TRAP can assemble into two types of dodecameric particles with the same symmetry but inverted orientation of trimers.

Shevtsov MB, Chen Y, Isupov MN, Leech A, Gollnick P, Antson AA.

J Struct Biol. 2010 Apr;170(1):127-33. doi: 10.1016/j.jsb.2010.01.013. Epub 2010 Feb 4.

23.

Recombinant human lactoferrin expressed in glycoengineered Pichia pastoris: effect of terminal N-acetylneuraminic acid on in vitro secondary humoral immune response.

Choi BK, Actor JK, Rios S, d'Anjou M, Stadheim TA, Warburton S, Giaccone E, Cukan M, Li H, Kull A, Sharkey N, Gollnick P, Kocieba M, Artym J, Zimecki M, Kruzel ML, Wildt S.

Glycoconj J. 2008 Aug;25(6):581-93. doi: 10.1007/s10719-008-9123-y. Epub 2008 Mar 26.

24.

Alanine scanning mutagenesis of anti-TRAP (AT) reveals residues involved in binding to TRAP.

Chen Y, Gollnick P.

J Mol Biol. 2008 Apr 11;377(5):1529-43. doi: 10.1016/j.jmb.2008.02.015. Epub 2008 Feb 15.

25.

The rate of TRAP binding to RNA is crucial for transcription attenuation control of the B. subtilis trp operon.

Barbolina MV, Kristoforov R, Manfredo A, Chen Y, Gollnick P.

J Mol Biol. 2007 Jul 27;370(5):925-38. Epub 2007 May 18.

26.

Aspartic acid 214 in Citrobacter freundii tyrosine phenol-lyase ensures sufficient C--H-acidity of the external aldimine intermediate and proper orientation of the cofactor at the active site.

Demidkina TV, Faleev NG, Papisova AI, Bazhulina NP, Kulikova VV, Gollnick PD, Phillips RS.

Biochim Biophys Acta. 2006 Jul;1764(7):1268-76. Epub 2006 May 16.

PMID:
16793353
27.

Thermodynamics of tryptophan-mediated activation of the trp RNA-binding attenuation protein.

McElroy CA, Manfredo A, Gollnick P, Foster MP.

Biochemistry. 2006 Jun 27;45(25):7844-53.

28.
29.

Tryptophanase from Proteus vulgaris: the conformational rearrangement in the active site, induced by the mutation of Tyrosine 72 to phenylalanine, and its mechanistic consequences.

Kulikova VV, Zakomirdina LN, Dementieva IS, Phillips RS, Gollnick PD, Demidkina TV, Faleev NG.

Biochim Biophys Acta. 2006 Apr;1764(4):750-7. Epub 2006 Jan 3.

PMID:
16455316
30.

Crystal structure of Bacillus subtilis anti-TRAP protein, an antagonist of TRAP/RNA interaction.

Shevtsov MB, Chen Y, Gollnick P, Antson AA.

Proc Natl Acad Sci U S A. 2005 Dec 6;102(49):17600-5. Epub 2005 Nov 23.

31.

Complexity in regulation of tryptophan biosynthesis in Bacillus subtilis.

Gollnick P, Babitzke P, Antson A, Yanofsky C.

Annu Rev Genet. 2005;39:47-68. Review.

PMID:
16285852
32.

Going for RNA repeats.

Gollnick P, Antson A.

Nat Struct Mol Biol. 2005 Apr;12(4):289-90. No abstract available.

PMID:
15809648
33.

Bacillus subtilis TRAP binds to its RNA target by a 5' to 3' directional mechanism.

Barbolina MV, Li X, Gollnick P.

J Mol Biol. 2005 Jan 28;345(4):667-79.

PMID:
15588817
34.

Cellular levels of trp RNA-binding attenuation protein in Bacillus subtilis.

McCabe BC, Gollnick P.

J Bacteriol. 2004 Aug;186(15):5157-9.

35.

Anti-TRAP protein from Bacillus subtilis: crystallization and internal symmetry.

Shevtsov MB, Chen Y, Gollnick P, Antson AA.

Acta Crystallogr D Biol Crystallogr. 2004 Jul;60(Pt 7):1311-4. Epub 2004 Jun 22.

PMID:
15213402
36.

Protein displacement by DExH/D "RNA helicases" without duplex unwinding.

Fairman ME, Maroney PA, Wang W, Bowers HA, Gollnick P, Nilsen TW, Jankowsky E.

Science. 2004 Apr 30;304(5671):730-4.

37.

Interaction of the trp RNA-binding attenuation protein (TRAP) with anti-TRAP.

Snyder D, Lary J, Chen Y, Gollnick P, Cole JL.

J Mol Biol. 2004 May 7;338(4):669-82.

PMID:
15099736
38.

The interaction of RNA with TRAP: the role of triplet repeats and separating spacer nucleotides.

Hopcroft NH, Manfredo A, Wendt AL, Brzozowski AM, Gollnick P, Antson AA.

J Mol Biol. 2004 Apr 16;338(1):43-53.

PMID:
15050822
40.

TRAP-RNA interactions involved in regulating transcription attenuation of the Bacillus subtilis trp operon.

Gollnick P.

Methods Enzymol. 2003;371:405-18. No abstract available.

PMID:
14712718
41.
42.

Role of arginine 226 in the mechanism of tryptophan indole-lyase from Proteus vulgaris.

Kulikova VV, Zakomirdina LN, Bazhulina NP, Dementieva IS, Faleev NG, Gollnick PD, Demidkina TV.

Biochemistry (Mosc). 2003 Nov;68(11):1181-8.

43.

Role of aspartate-133 and histidine-458 in the mechanism of tryptophan indole-lyase from Proteus vulgaris.

Demidkina TV, Zakomirdina LN, Kulikova VV, Dementieva IS, Faleev NG, Ronda L, Mozzarelli A, Gollnick PD, Phillips RS.

Biochemistry. 2003 Sep 30;42(38):11161-9.

PMID:
14503866
45.

TROSY-NMR studies of the 91kDa TRAP protein reveal allosteric control of a gene regulatory protein by ligand-altered flexibility.

McElroy C, Manfredo A, Wendt A, Gollnick P, Foster M.

J Mol Biol. 2002 Oct 25;323(3):463-73.

PMID:
12381302
46.

Transcription attenuation.

Gollnick P, Babitzke P.

Biochim Biophys Acta. 2002 Sep 13;1577(2):240-50. Review.

PMID:
12213655
47.
48.

Threonine-124 and phenylalanine-448 in Citrobacter freundii tyrosine phenol-lyase are necessary for activity with L-tyrosine.

Demidkina TV, Barbolina MV, Faleev NG, Sundararaju B, Gollnick PD, Phillips RS.

Biochem J. 2002 May 1;363(Pt 3):745-52.

49.

Specificity of TRAP-RNA interactions: crystal structures of two complexes with different RNA sequences.

Hopcroft NH, Wendt AL, Gollnick P, Antson AA.

Acta Crystallogr D Biol Crystallogr. 2002 Apr;58(Pt 4):615-21. Epub 2002 Mar 22.

PMID:
11914485
50.

Creating hetero-11-mers composed of wild-type and mutant subunits to study RNA binding to TRAP.

Li PT, Scott DJ, Gollnick P.

J Biol Chem. 2002 Apr 5;277(14):11838-44. Epub 2002 Jan 22.

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