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Items: 25

1.

Trait associations in the pangenome of pigeon pea (Cajanus cajan).

Zhao J, Bayer PE, Ruperao P, Saxena RK, Khan AW, Golicz AA, Nguyen HT, Batley J, Edwards D, Varshney RK.

Plant Biotechnol J. 2020 Feb 5. doi: 10.1111/pbi.13354. [Epub ahead of print]

2.

Method for Genome-Wide Association Study: A Soybean Example.

Anderson R, Fernandez CT, Yuan Y, Golicz AA, Edwards D, Bayer PE.

Methods Mol Biol. 2020;2107:147-158. doi: 10.1007/978-1-0716-0235-5_7.

PMID:
31893446
3.

Legume Pangenome Construction Using an Iterative Mapping and Assembly Approach.

Hu H, Yuan Y, Bayer PE, Fernandez CT, Scheben A, Golicz AA, Edwards D.

Methods Mol Biol. 2020;2107:35-47. doi: 10.1007/978-1-0716-0235-5_3.

PMID:
31893442
4.

Pangenomics Comes of Age: From Bacteria to Plant and Animal Applications.

Golicz AA, Bayer PE, Bhalla PL, Batley J, Edwards D.

Trends Genet. 2020 Feb;36(2):132-145. doi: 10.1016/j.tig.2019.11.006. Epub 2019 Dec 24. Review.

PMID:
31882191
5.

Super-Pangenome by Integrating the Wild Side of a Species for Accelerated Crop Improvement.

Khan AW, Garg V, Roorkiwal M, Golicz AA, Edwards D, Varshney RK.

Trends Plant Sci. 2020 Feb;25(2):148-158. doi: 10.1016/j.tplants.2019.10.012. Epub 2019 Nov 29. Review.

6.

Correction to: Analysis of the quinoa genome reveals conservation and divergence of the flowering pathways.

Golicz AA, Steinfort U, Arya H, Singh MB, Bhalla PL.

Funct Integr Genomics. 2020 Mar;20(2):259. doi: 10.1007/s10142-019-00721-z.

PMID:
31736011
7.

Analysis of the quinoa genome reveals conservation and divergence of the flowering pathways.

Golicz AA, Steinfort U, Arya H, Singh MB, Bhalla PL.

Funct Integr Genomics. 2020 Mar;20(2):245-258. doi: 10.1007/s10142-019-00711-1. Epub 2019 Sep 12. Erratum in: Funct Integr Genomics. 2019 Nov 18;:.

PMID:
31515641
8.

Genome-wide analysis of the Hsf gene family in Brassica oleracea and a comparative analysis of the Hsf gene family in B. oleracea, B. rapa and B. napus.

Lohani N, Golicz AA, Singh MB, Bhalla PL.

Funct Integr Genomics. 2019 May;19(3):515-531. doi: 10.1007/s10142-018-0649-1. Epub 2019 Jan 7.

PMID:
30618014
9.

Insight into the evolution and functional characteristics of the pan-genome assembly from sesame landraces and modern cultivars.

Yu J, Golicz AA, Lu K, Dossa K, Zhang Y, Chen J, Wang L, You J, Fan D, Edwards D, Zhang X.

Plant Biotechnol J. 2019 May;17(5):881-892. doi: 10.1111/pbi.13022. Epub 2018 Dec 8.

10.

Variation in abundance of predicted resistance genes in the Brassica oleracea pangenome.

Bayer PE, Golicz AA, Tirnaz S, Chan CK, Edwards D, Batley J.

Plant Biotechnol J. 2019 Apr;17(4):789-800. doi: 10.1111/pbi.13015. Epub 2018 May 31.

11.

MCRiceRepGP: a framework for the identification of genes associated with sexual reproduction in rice.

Golicz AA, Bhalla PL, Singh MB.

Plant J. 2018 Oct;96(1):188-202. doi: 10.1111/tpj.14019. Epub 2018 Aug 16.

12.

Genomic comparison of two independent seagrass lineages reveals habitat-driven convergent evolution.

Lee H, Golicz AA, Bayer PE, Severn-Ellis AA, Chan CK, Batley J, Kendrick GA, Edwards D.

J Exp Bot. 2018 Jun 27;69(15):3689-3702. doi: 10.1093/jxb/ery147.

13.

lncRNAs in Plant and Animal Sexual Reproduction.

Golicz AA, Bhalla PL, Singh MB.

Trends Plant Sci. 2018 Mar;23(3):195-205. doi: 10.1016/j.tplants.2017.12.009. Epub 2018 Jan 31. Review.

PMID:
29395831
14.

The Long Intergenic Noncoding RNA (LincRNA) Landscape of the Soybean Genome.

Golicz AA, Singh MB, Bhalla PL.

Plant Physiol. 2018 Mar;176(3):2133-2147. doi: 10.1104/pp.17.01657. Epub 2017 Dec 28.

15.

Homoeologous exchange is a major cause of gene presence/absence variation in the amphidiploid Brassica napus.

Hurgobin B, Golicz AA, Bayer PE, Chan CK, Tirnaz S, Dolatabadian A, Schiessl SV, Samans B, Montenegro JD, Parkin IAP, Pires JC, Chalhoub B, King GJ, Snowdon R, Batley J, Edwards D.

Plant Biotechnol J. 2018 Jul;16(7):1265-1274. doi: 10.1111/pbi.12867. Epub 2018 Jan 10.

16.

Assembly and comparison of two closely related Brassica napus genomes.

Bayer PE, Hurgobin B, Golicz AA, Chan CK, Yuan Y, Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King GJ, Batley J, Edwards D.

Plant Biotechnol J. 2017 Dec;15(12):1602-1610. doi: 10.1111/pbi.12742. Epub 2017 Jun 14.

17.

The pangenome of hexaploid bread wheat.

Montenegro JD, Golicz AA, Bayer PE, Hurgobin B, Lee H, Chan CK, Visendi P, Lai K, Doležel J, Batley J, Edwards D.

Plant J. 2017 Jun;90(5):1007-1013. doi: 10.1111/tpj.13515. Epub 2017 Apr 5.

18.

The pangenome of an agronomically important crop plant Brassica oleracea.

Golicz AA, Bayer PE, Barker GC, Edger PP, Kim H, Martinez PA, Chan CK, Severn-Ellis A, McCombie WR, Parkin IA, Paterson AH, Pires JC, Sharpe AG, Tang H, Teakle GR, Town CD, Batley J, Edwards D.

Nat Commun. 2016 Nov 11;7:13390. doi: 10.1038/ncomms13390.

19.

The Genome of a Southern Hemisphere Seagrass Species (Zostera muelleri).

Lee H, Golicz AA, Bayer PE, Jiao Y, Tang H, Paterson AH, Sablok G, Krishnaraj RR, Chan CK, Batley J, Kendrick GA, Larkum AW, Ralph PJ, Edwards D.

Plant Physiol. 2016 Sep;172(1):272-83. doi: 10.1104/pp.16.00868. Epub 2016 Jul 3.

20.

An efficient approach to BAC based assembly of complex genomes.

Visendi P, Berkman PJ, Hayashi S, Golicz AA, Bayer PE, Ruperao P, Hurgobin B, Montenegro J, Chan CK, Staňková H, Batley J, Šimková H, Doležel J, Edwards D.

Plant Methods. 2016 Jan 20;12:2. doi: 10.1186/s13007-016-0107-9. eCollection 2016.

21.

Towards plant pangenomics.

Golicz AA, Batley J, Edwards D.

Plant Biotechnol J. 2016 Apr;14(4):1099-105. doi: 10.1111/pbi.12499. Epub 2015 Nov 23. Review.

22.

Genome-wide survey of the seagrass Zostera muelleri suggests modification of the ethylene signalling network.

Golicz AA, Schliep M, Lee HT, Larkum AW, Dolferus R, Batley J, Chan CK, Sablok G, Ralph PJ, Edwards D.

J Exp Bot. 2015 Mar;66(5):1489-98. doi: 10.1093/jxb/eru510. Epub 2015 Jan 6.

23.

Gene loss in the fungal canola pathogen Leptosphaeria maculans.

Golicz AA, Martinez PA, Zander M, Patel DA, Van De Wouw AP, Visendi P, Fitzgerald TL, Edwards D, Batley J.

Funct Integr Genomics. 2015 Mar;15(2):189-96. doi: 10.1007/s10142-014-0412-1. Epub 2014 Nov 25.

PMID:
25421464
24.

Skim-based genotyping by sequencing.

Golicz AA, Bayer PE, Edwards D.

Methods Mol Biol. 2015;1245:257-70. doi: 10.1007/978-1-4939-1966-6_19.

PMID:
25373763
25.

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.

Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Da Silva C, Just J, Falentin C, Koh CS, Le Clainche I, Bernard M, Bento P, Noel B, Labadie K, Alberti A, Charles M, Arnaud D, Guo H, Daviaud C, Alamery S, Jabbari K, Zhao M, Edger PP, Chelaifa H, Tack D, Lassalle G, Mestiri I, Schnel N, Le Paslier MC, Fan G, Renault V, Bayer PE, Golicz AA, Manoli S, Lee TH, Thi VH, Chalabi S, Hu Q, Fan C, Tollenaere R, Lu Y, Battail C, Shen J, Sidebottom CH, Wang X, Canaguier A, Chauveau A, Bérard A, Deniot G, Guan M, Liu Z, Sun F, Lim YP, Lyons E, Town CD, Bancroft I, Wang X, Meng J, Ma J, Pires JC, King GJ, Brunel D, Delourme R, Renard M, Aury JM, Adams KL, Batley J, Snowdon RJ, Tost J, Edwards D, Zhou Y, Hua W, Sharpe AG, Paterson AH, Guan C, Wincker P.

Science. 2014 Aug 22;345(6199):950-3. doi: 10.1126/science.1253435. Epub 2014 Aug 21.

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