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Items: 1 to 50 of 542

1.

Enhancing communication and social engagement among clinicians and research teams to improve reliability of research recruitment.

Chang JC, Buckley LH, Goldberg T, Nolan BE, Peterson R, Liebling EJ, Waqar LN, Burnham JM.

BMJ Open Qual. 2019 Nov 24;8(4):e000725. doi: 10.1136/bmjoq-2019-000725. eCollection 2019.

PMID:
31803853
2.

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens.

Zhou N, Jiang Y, Bergquist TR, Lee AJ, Kacsoh BZ, Crocker AW, Lewis KA, Georghiou G, Nguyen HN, Hamid MN, Davis L, Dogan T, Atalay V, Rifaioglu AS, Dalkıran A, Cetin Atalay R, Zhang C, Hurto RL, Freddolino PL, Zhang Y, Bhat P, Supek F, Fernández JM, Gemovic B, Perovic VR, Davidović RS, Sumonja N, Veljkovic N, Asgari E, Mofrad MRK, Profiti G, Savojardo C, Martelli PL, Casadio R, Boecker F, Schoof H, Kahanda I, Thurlby N, McHardy AC, Renaux A, Saidi R, Gough J, Freitas AA, Antczak M, Fabris F, Wass MN, Hou J, Cheng J, Wang Z, Romero AE, Paccanaro A, Yang H, Goldberg T, Zhao C, Holm L, Törönen P, Medlar AJ, Zosa E, Borukhov I, Novikov I, Wilkins A, Lichtarge O, Chi PH, Tseng WC, Linial M, Rose PW, Dessimoz C, Vidulin V, Dzeroski S, Sillitoe I, Das S, Lees JG, Jones DT, Wan C, Cozzetto D, Fa R, Torres M, Warwick Vesztrocy A, Rodriguez JM, Tress ML, Frasca M, Notaro M, Grossi G, Petrini A, Re M, Valentini G, Mesiti M, Roche DB, Reeb J, Ritchie DW, Aridhi S, Alborzi SZ, Devignes MD, Koo DCE, Bonneau R, Gligorijević V, Barot M, Fang H, Toppo S, Lavezzo E, Falda M, Berselli M, Tosatto SCE, Carraro M, Piovesan D, Ur Rehman H, Mao Q, Zhang S, Vucetic S, Black GS, Jo D, Suh E, Dayton JB, Larsen DJ, Omdahl AR, McGuffin LJ, Brackenridge DA, Babbitt PC, Yunes JM, Fontana P, Zhang F, Zhu S, You R, Zhang Z, Dai S, Yao S, Tian W, Cao R, Chandler C, Amezola M, Johnson D, Chang JM, Liao WH, Liu YW, Pascarelli S, Frank Y, Hoehndorf R, Kulmanov M, Boudellioua I, Politano G, Di Carlo S, Benso A, Hakala K, Ginter F, Mehryary F, Kaewphan S, Björne J, Moen H, Tolvanen MEE, Salakoski T, Kihara D, Jain A, Šmuc T, Altenhoff A, Ben-Hur A, Rost B, Brenner SE, Orengo CA, Jeffery CJ, Bosco G, Hogan DA, Martin MJ, O'Donovan C, Mooney SD, Greene CS, Radivojac P, Friedberg I.

Genome Biol. 2019 Nov 19;20(1):244. doi: 10.1186/s13059-019-1835-8.

3.

Biodiversity of protists and nematodes in the wild nonhuman primate gut.

Mann AE, Mazel F, Lemay MA, Morien E, Billy V, Kowalewski M, Di Fiore A, Link A, Goldberg TL, Tecot S, Baden AL, Gomez A, Sauther ML, Cuozzo FP, Rice GAO, Dominy NJ, Stumpf R, Lewis RJ, Swedell L, Amato K, Wegener Parfrey L.

ISME J. 2019 Nov 12. doi: 10.1038/s41396-019-0551-4. [Epub ahead of print]

PMID:
31719654
4.

SOAP Notes During APPEs: Assessment of Student Performance.

Nguyen T, Wong E, Wang Z, Goldberg T.

J Pharm Pract. 2019 Nov 6:897190019885274. doi: 10.1177/0897190019885274. [Epub ahead of print]

PMID:
31694447
5.

Intact global cognitive and olfactory ability predicts lack of transition to dementia.

Devanand DP, Lee S, Luchsinger JA, Andrews H, Goldberg T, Huey ED, Schupf N, Manly J, Stern Y, Kreisl WC, Mayeux R.

Alzheimers Dement. 2019 Oct 23. pii: S1552-5260(19)35374-9. doi: 10.1016/j.jalz.2019.08.200. [Epub ahead of print]

PMID:
31676234
6.

Multidecade Mortality and a Homolog of Hepatitis C Virus in Bald Eagles (Haliaeetus leucocephalus), the National Bird of the USA.

Goldberg TL, Sibley SD, Pinkerton ME, Dunn CD, Long LJ, White LC, Strom SM.

Sci Rep. 2019 Oct 18;9(1):14953. doi: 10.1038/s41598-019-50580-8.

7.

Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny.

Amato KR, Mallott EK, McDonald D, Dominy NJ, Goldberg T, Lambert JE, Swedell L, Metcalf JL, Gomez A, Britton GAO, Stumpf RM, Leigh SR, Knight R.

Genome Biol. 2019 Oct 8;20(1):201. doi: 10.1186/s13059-019-1807-z.

8.

Characterization and genotype-phenotype correlation of patients with Fanconi anemia in a multi-ethnic population.

Steinberg-Shemer O, Goldberg TA, Yacobovich J, Levin C, Koren A, Revel-Vilk S, Ben-Ami T, Kuperman AA, Shkalim Zemer V, Toren A, Kapelushnik J, Ben-Barak A, Miskin H, Krasnov T, Noy-Lotan S, Dgany O, Tamary H.

Haematologica. 2019 Sep 26. pii: haematol.2019.222877. doi: 10.3324/haematol.2019.222877. [Epub ahead of print]

9.

Reference intervals for blood-based biochemical analytes of southern Beaufort Sea polar bears.

Fry TL, Friedrichs KR, Atwood TC, Duncan C, Simac K, Goldberg T.

Conserv Physiol. 2019 Sep 16;7(1):coz040. doi: 10.1093/conphys/coz040. eCollection 2019.

10.

Cognitive training and neuroplasticity in mild cognitive impairment (COG-IT): protocol for a two-site, blinded, randomised, controlled treatment trial.

D'Antonio J, Simon-Pearson L, Goldberg T, Sneed JR, Rushia S, Kerner N, Andrews H, Hellegers C, Tolbert S, Perea E, Petrella J, Doraiswamy PM, Devanand D.

BMJ Open. 2019 Aug 30;9(8):e028536. doi: 10.1136/bmjopen-2018-028536. Erratum in: BMJ Open. 2019 Sep 11;9(9):e028536corr1.

11.

AT-dinucleotide rich sequences drive fragile site formation.

Irony-Tur Sinai M, Salamon A, Stanleigh N, Goldberg T, Weiss A, Wang YH, Kerem B.

Nucleic Acids Res. 2019 Oct 10;47(18):9685-9695. doi: 10.1093/nar/gkz689.

12.
13.

Logistical and Economic Advantages of Sterile-Packed, Single-Use Instruments for Total Knee Arthroplasty.

Goldberg TD, Maltry JA, Ahuja M, Inzana JA.

J Arthroplasty. 2019 Sep;34(9):1876-1883.e2. doi: 10.1016/j.arth.2019.03.011. Epub 2019 Apr 25.

14.

Genome-Wide Patterns of Gene Expression in a Wild Primate Indicate Species-Specific Mechanisms Associated with Tolerance to Natural Simian Immunodeficiency Virus Infection.

Simons ND, Eick GN, Ruiz-Lopez MJ, Hyeroba D, Omeja PA, Weny G, Zheng H, Shankar A, Frost SDW, Jones JH, Chapman CA, Switzer WM, Goldberg TL, Sterner KN, Ting N.

Genome Biol Evol. 2019 Jun 1;11(6):1630-1643. doi: 10.1093/gbe/evz099.

15.

The evolution of a super-swarm of foot-and-mouth disease virus in cattle.

Arzt J, Fish I, Pauszek SJ, Johnson SL, Chain PS, Rai DK, Rieder E, Goldberg TL, Rodriguez LL, Stenfeldt C.

PLoS One. 2019 Apr 25;14(4):e0210847. doi: 10.1371/journal.pone.0210847. eCollection 2019.

16.

Detailed prediction of protein sub-nuclear localization.

Littmann M, Goldberg T, Seitz S, Bodén M, Rost B.

BMC Bioinformatics. 2019 Apr 23;20(1):205. doi: 10.1186/s12859-019-2790-9.

17.

Breadth and depth of working memory and executive function compromises in mild cognitive impairment and their relationships to frontal lobe morphometry and functional competence.

Garcia-Alvarez L, Gomar JJ, Sousa A, Garcia-Portilla MP, Goldberg TE.

Alzheimers Dement (Amst). 2019 Feb 22;11:170-179. doi: 10.1016/j.dadm.2018.12.010. eCollection 2019 Dec.

18.

Simultaneous outbreaks of respiratory disease in wild chimpanzees caused by distinct viruses of human origin.

Negrey JD, Reddy RB, Scully EJ, Phillips-Garcia S, Owens LA, Langergraber KE, Mitani JC, Emery Thompson M, Wrangham RW, Muller MN, Otali E, Machanda Z, Hyeroba D, Grindle KA, Pappas TE, Palmenberg AC, Gern JE, Goldberg TL.

Emerg Microbes Infect. 2019;8(1):139-149. doi: 10.1080/22221751.2018.1563456.

19.

Risk factors for respiratory illness in a community of wild chimpanzees (Pan troglodytes schweinfurthii).

Emery Thompson M, Machanda ZP, Scully EJ, Enigk DK, Otali E, Muller MN, Goldberg TL, Chapman CA, Wrangham RW.

R Soc Open Sci. 2018 Sep 19;5(9):180840. doi: 10.1098/rsos.180840. eCollection 2018 Sep.

20.

Corrigendum to "Diverse RNA viruses of arthropod origin in the blood of fruit bats suggest a link between bat and arthropod viromes" [Virology 528 (2019) 64-72].

Bennett AJ, Bushmaker T, Cameron K, Ondzie A, Niama FR, Parra HJ, Mombouli JV, Olson SH, Munster VJ, Goldberg TL.

Virology. 2019 Feb;528. pii: S0042-6822(19)30021-2. doi: 10.1016/j.virol.2019.01.020. Epub 2019 Jan 25. No abstract available.

PMID:
30691873
21.

Diverse RNA viruses of arthropod origin in the blood of fruit bats suggest a link between bat and arthropod viromes.

Bennett AJ, Bushmaker T, Cameron K, Ondzie A, Niama FR, Parra HJ, Mombouli JV, Olson SH, Munster VJ, Goldberg TL.

Virology. 2019 Feb;528:64-72. doi: 10.1016/j.virol.2018.12.009. Epub 2018 Dec 18. Erratum in: Virology. 2019 Jan 25;:.

PMID:
30576861
22.

Combining multimodal imaging and treatment features improves machine learning-based prognostic assessment in patients with glioblastoma multiforme.

Peeken JC, Goldberg T, Pyka T, Bernhofer M, Wiestler B, Kessel KA, Tafti PD, Nüsslin F, Braun AE, Zimmer C, Rost B, Combs SE.

Cancer Med. 2019 Jan;8(1):128-136. doi: 10.1002/cam4.1908. Epub 2018 Dec 18.

24.

Antibiotic-Resistant Escherichia coli and Class 1 Integrons in Humans, Domestic Animals, and Wild Primates in Rural Uganda.

Weiss D, Wallace RM, Rwego IB, Gillespie TR, Chapman CA, Singer RS, Goldberg TL.

Appl Environ Microbiol. 2018 Oct 17;84(21). pii: e01632-18. doi: 10.1128/AEM.01632-18. Print 2018 Nov 1.

25.

The Age-Related Perfusion Pattern Measured With Arterial Spin Labeling MRI in Healthy Subjects.

Zhang N, Gordon ML, Ma Y, Chi B, Gomar JJ, Peng S, Kingsley PB, Eidelberg D, Goldberg TE.

Front Aging Neurosci. 2018 Jul 17;10:214. doi: 10.3389/fnagi.2018.00214. eCollection 2018.

26.

One-year adolescent bone mineral density and bone formation marker changes through the use or lack of use of combined hormonal contraceptives.

Rizzo ADCB, Goldberg TBL, Biason TP, Kurokawa CS, Silva CCD, Corrente JE, Nunes HRC.

J Pediatr (Rio J). 2019 Sep - Oct;95(5):567-574. doi: 10.1016/j.jped.2018.05.011. Epub 2018 Jun 28.

27.

Measuring cognition and function in the preclinical stage of Alzheimer's disease.

Weintraub S, Carrillo MC, Farias ST, Goldberg TE, Hendrix JA, Jaeger J, Knopman DS, Langbaum JB, Park DC, Ropacki MT, Sikkes SAM, Welsh-Bohmer KA, Bain LJ, Brashear R, Budur K, Graf A, Martenyi F, Storck MS, Randolph C.

Alzheimers Dement (N Y). 2018 Feb 13;4:64-75. doi: 10.1016/j.trci.2018.01.003. eCollection 2018. Review.

28.

Selective constraint and adaptive potential of West Nile virus within and among naturally infected avian hosts and mosquito vectors.

Nelson CW, Sibley SD, Kolokotronis SO, Hamer GL, Newman CM, Anderson TK, Walker ED, Kitron UD, Brawn JD, Ruiz MO, Goldberg TL.

Virus Evol. 2018 Jun 12;4(1):vey013. doi: 10.1093/ve/vey013. eCollection 2018 Jan.

29.

Severe neurologic disease and chick mortality in crested screamers (Chauna torquata) infected with a novel Gyrovirus.

Goldberg TL, Clyde VL, Gendron-Fitzpatrick A, Sibley SD, Wallace R.

Virology. 2018 Jul;520:111-115. doi: 10.1016/j.virol.2018.05.014. Epub 2018 May 28.

30.

Radiomics in radiooncology - Challenging the medical physicist.

Peeken JC, Bernhofer M, Wiestler B, Goldberg T, Cremers D, Rost B, Wilkens JJ, Combs SE, Nüsslin F.

Phys Med. 2018 Apr;48:27-36. doi: 10.1016/j.ejmp.2018.03.012. Epub 2018 Mar 27. Review.

PMID:
29728226
31.

Co-circulation of Flanders Virus and West Nile Virus in Culex Mosquitoes (Diptera: Culicidae) from Chicago, Illinois.

Poh KC, Martin E, Walker ED, Kitron U, Ruiz MO, Goldberg TL, Hamer GL.

J Med Entomol. 2018 Jun 28;55(4):1062-1066. doi: 10.1093/jme/tjy051.

32.

Taxonomy of the order Mononegavirales: update 2018.

Amarasinghe GK, Aréchiga Ceballos NG, Banyard AC, Basler CF, Bavari S, Bennett AJ, Blasdell KR, Briese T, Bukreyev A, Caì Y, Calisher CH, Campos Lawson C, Chandran K, Chapman CA, Chiu CY, Choi KS, Collins PL, Dietzgen RG, Dolja VV, Dolnik O, Domier LL, Dürrwald R, Dye JM, Easton AJ, Ebihara H, Echevarría JE, Fooks AR, Formenty PBH, Fouchier RAM, Freuling CM, Ghedin E, Goldberg TL, Hewson R, Horie M, Hyndman TH, Jiāng D, Kityo R, Kobinger GP, Kondō H, Koonin EV, Krupovic M, Kurath G, Lamb RA, Lee B, Leroy EM, Maes P, Maisner A, Marston DA, Mor SK, Müller T, Mühlberger E, Ramírez VMN, Netesov SV, Ng TFF, Nowotny N, Palacios G, Patterson JL, Pawęska JT, Payne SL, Prieto K, Rima BK, Rota P, Rubbenstroth D, Schwemmle M, Siddell S, Smither SJ, Song Q, Song T, Stenglein MD, Stone DM, Takada A, Tesh RB, Thomazelli LM, Tomonaga K, Tordo N, Towner JS, Vasilakis N, Vázquez-Morón S, Verdugo C, Volchkov VE, Wahl V, Walker PJ, Wang D, Wang LF, Wellehan JFX, Wiley MR, Whitfield AE, Wolf YI, Yè G, Zhāng YZ, Kuhn JH.

Arch Virol. 2018 Aug;163(8):2283-2294. doi: 10.1007/s00705-018-3814-x. Epub 2018 Apr 11.

33.

Tivantinib for second-line treatment of MET-high, advanced hepatocellular carcinoma (METIV-HCC): a final analysis of a phase 3, randomised, placebo-controlled study.

Rimassa L, Assenat E, Peck-Radosavljevic M, Pracht M, Zagonel V, Mathurin P, Rota Caremoli E, Porta C, Daniele B, Bolondi L, Mazzaferro V, Harris W, Damjanov N, Pastorelli D, Reig M, Knox J, Negri F, Trojan J, López López C, Personeni N, Decaens T, Dupuy M, Sieghart W, Abbadessa G, Schwartz B, Lamar M, Goldberg T, Shuster D, Santoro A, Bruix J.

Lancet Oncol. 2018 May;19(5):682-693. doi: 10.1016/S1470-2045(18)30146-3. Epub 2018 Apr 3.

PMID:
29625879
34.

Treatment-related features improve machine learning prediction of prognosis in soft tissue sarcoma patients.

Peeken JC, Goldberg T, Knie C, Komboz B, Bernhofer M, Pasa F, Kessel KA, Tafti PD, Rost B, Nüsslin F, Braun AE, Combs SE.

Strahlenther Onkol. 2018 Sep;194(9):824-834. doi: 10.1007/s00066-018-1294-2. Epub 2018 Mar 20.

PMID:
29557486
35.

CellMap visualizes protein-protein interactions and subcellular localization.

Dallago C, Goldberg T, Andrade-Navarro MA, Alanis-Lobato G, Rost B.

Version 2. F1000Res. 2017 Oct 11 [revised 2018 Jan 1];6:1824. doi: 10.12688/f1000research.12707.2. eCollection 2017.

36.

Lethal Respiratory Disease Associated with Human Rhinovirus C in Wild Chimpanzees, Uganda, 2013.

Scully EJ, Basnet S, Wrangham RW, Muller MN, Otali E, Hyeroba D, Grindle KA, Pappas TE, Thompson ME, Machanda Z, Watters KE, Palmenberg AC, Gern JE, Goldberg TL.

Emerg Infect Dis. 2018 Feb;24(2):267-274. doi: 10.3201/eid2402.170778.

37.

LocText: relation extraction of protein localizations to assist database curation.

Cejuela JM, Vinchurkar S, Goldberg T, Prabhu Shankar MS, Baghudana A, Bojchevski A, Uhlig C, Ofner A, Raharja-Liu P, Jensen LJ, Rost B.

BMC Bioinformatics. 2018 Jan 17;19(1):15. doi: 10.1186/s12859-018-2021-9.

38.

NLSdb-major update for database of nuclear localization signals and nuclear export signals.

Bernhofer M, Goldberg T, Wolf S, Ahmed M, Zaugg J, Boden M, Rost B.

Nucleic Acids Res. 2018 Jan 4;46(D1):D503-D508. doi: 10.1093/nar/gkx1021.

39.

Differential medial temporal lobe morphometric predictors of item- and relational-encoded memories in healthy individuals and in individuals with mild cognitive impairment and Alzheimer's disease.

Gomar JJ, Ragland JD, Uluğ AM, Sousa A, Huey ED, Conejero-Goldberg C, Davies P, Goldberg TE.

Alzheimers Dement (N Y). 2017 Mar 23;3(2):238-246. doi: 10.1016/j.trci.2017.03.002. eCollection 2017 Jun.

40.

Discovery of numerous novel small genes in the intergenic regions of the Escherichia coli O157:H7 Sakai genome.

Hücker SM, Ardern Z, Goldberg T, Schafferhans A, Bernhofer M, Vestergaard G, Nelson CW, Schloter M, Rost B, Scherer S, Neuhaus K.

PLoS One. 2017 Sep 13;12(9):e0184119. doi: 10.1371/journal.pone.0184119. eCollection 2017.

41.

New Onset Insomnia in a Pediatric Patient: A Case of Anti-NMDA Receptor Encephalitis.

Goldberg TN, Cellucci MF.

Case Rep Pediatr. 2017;2017:4083785. doi: 10.1155/2017/4083785. Epub 2017 Jul 9.

42.

Kanyawara Virus: A Novel Rhabdovirus Infecting Newly Discovered Nycteribiid Bat Flies Infesting Previously Unknown Pteropodid Bats in Uganda.

Goldberg TL, Bennett AJ, Kityo R, Kuhn JH, Chapman CA.

Sci Rep. 2017 Jul 13;7(1):5287. doi: 10.1038/s41598-017-05236-w.

43.

Comparison of gastrointestinal parasite communities in vervet monkeys.

Valenta K, Twinomugisha D, Godfrey K, Liu C, Schoof VAM, Goldberg TL, Chapman CA.

Integr Zool. 2017 Nov;12(6):512-520. doi: 10.1111/1749-4877.12270.

44.

Cis-regulatory evolution in a wild primate: Infection-associated genetic variation drives differential expression of MHC-DQA1 in vitro.

Simons ND, Eick GN, Ruiz-Lopez MJ, Omeja PA, Chapman CA, Goldberg TL, Ting N, Sterner KN.

Mol Ecol. 2017 Sep;26(17):4523-4535. doi: 10.1111/mec.14221. Epub 2017 Jul 24.

45.

Culex Flavivirus During West Nile Virus Epidemic and Interepidemic Years in Chicago, United States.

Newman CM, Krebs BL, Anderson TK, Hamer GL, Ruiz MO, Brawn JD, Brown WM, Kitron UD, Goldberg TL.

Vector Borne Zoonotic Dis. 2017 Aug;17(8):567-575. doi: 10.1089/vbz.2017.2124. Epub 2017 Jun 19.

46.

Novel reductive dehalogenases from the marine sponge associated bacterium Desulfoluna spongiiphila.

Liu J, Lopez N, Ahn Y, Goldberg T, Bromberg Y, Kerkhof LJ, Häggblom MM.

Environ Microbiol Rep. 2017 Oct;9(5):537-549. doi: 10.1111/1758-2229.12556. Epub 2017 Jul 21.

PMID:
28618195
47.

Tumor biopsy and patient enrollment in clinical trials for advanced hepatocellular carcinoma.

Rimassa L, Reig M, Abbadessa G, Peck-Radosavljevic M, Harris W, Zagonel V, Pastorelli D, Rota Caremoli E, Porta C, Damjanov N, Patel H, Daniele B, Lamar M, Schwartz B, Goldberg T, Santoro A, Bruix J.

World J Gastroenterol. 2017 Apr 7;23(13):2448-2452. doi: 10.3748/wjg.v23.i13.2448.

48.

Performance-based and Observational Assessments in Clinical Trials Across the Alzheimer's Disease Spectrum.

Harvey PD, Cosentino S, Curiel R, Goldberg TE, Kaye J, Loewenstein D, Marson D, Salmon D, Wesnes K, Posner H.

Innov Clin Neurosci. 2017 Feb 1;14(1-2):30-39. eCollection 2017 Jan-Feb. Review.

49.

Metagenomic assessment of adventitious viruses in commercial bovine sera.

Toohey-Kurth K, Sibley SD, Goldberg TL.

Biologicals. 2017 May;47:64-68. doi: 10.1016/j.biologicals.2016.10.009. Epub 2017 Mar 31.

PMID:
28366627
50.

A meta-analysis of self-monitoring on reading performance of K-12 students.

Guzman G, Goldberg TS, Swanson HL.

Sch Psychol Q. 2018 Mar;33(1):160-168. doi: 10.1037/spq0000199. Epub 2017 Mar 16.

PMID:
28301179

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