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Items: 21

1.

Genomewide Assessment of Mycobacterium tuberculosis Conditionally Essential Metabolic Pathways.

Minato Y, Gohl DM, Thiede JM, Chacón JM, Harcombe WR, Maruyama F, Baughn AD.

mSystems. 2019 Jun 25;4(4). pii: e00070-19. doi: 10.1128/mSystems.00070-19.

2.

Measuring sequencer size bias using REcount: a novel method for highly accurate Illumina sequencing-based quantification.

Gohl DM, Magli A, Garbe J, Becker A, Johnson DM, Anderson S, Auch B, Billstein B, Froehling E, McDevitt SL, Beckman KB.

Genome Biol. 2019 Apr 29;20(1):85. doi: 10.1186/s13059-019-1691-6.

3.

Evaluating the Information Content of Shallow Shotgun Metagenomics.

Hillmann B, Al-Ghalith GA, Shields-Cutler RR, Zhu Q, Gohl DM, Beckman KB, Knight R, Knights D.

mSystems. 2018 Nov 13;3(6). pii: e00069-18. doi: 10.1128/mSystems.00069-18. eCollection 2018 Nov-Dec.

4.

Publisher Correction: Diverse populations of local interneurons integrate into the Drosophila adult olfactory circuit.

Liou NF, Lin SH, Chen YJ, Tsai KT, Yang CJ, Lin TY, Wu TH, Lin HJ, Chen YT, Gohl DM, Silies M, Chou YH.

Nat Commun. 2018 Nov 6;9(1):4729. doi: 10.1038/s41467-018-07001-7.

5.

Comprehensive Functional Analysis of the Enterococcus faecalis Core Genome Using an Ordered, Sequence-Defined Collection of Insertional Mutations in Strain OG1RF.

Dale JL, Beckman KB, Willett JLE, Nilson JL, Palani NP, Baller JA, Hauge A, Gohl DM, Erickson R, Manias DA, Sadowsky MJ, Dunny GM.

mSystems. 2018 Sep 11;3(5). pii: e00062-18. doi: 10.1128/mSystems.00062-18. eCollection 2018 Sep-Oct.

6.

Diverse populations of local interneurons integrate into the Drosophila adult olfactory circuit.

Liou NF, Lin SH, Chen YJ, Tsai KT, Yang CJ, Lin TY, Wu TH, Lin HJ, Chen YT, Gohl DM, Silies M, Chou YH.

Nat Commun. 2018 Jun 8;9(1):2232. doi: 10.1038/s41467-018-04675-x. Erratum in: Nat Commun. 2018 Nov 6;9(1):4729.

7.

Nociceptive interneurons control modular motor pathways to promote escape behavior in Drosophila.

Burgos A, Honjo K, Ohyama T, Qian CS, Shin GJ, Gohl DM, Silies M, Tracey WD, Zlatic M, Cardona A, Grueber WB.

Elife. 2018 Mar 12;7. pii: e26016. doi: 10.7554/eLife.26016.

8.

The ecological landscape of microbiome science.

Gohl DM.

Nat Biotechnol. 2017 Nov;35(11):1047-1049. doi: 10.1038/nbt.3983. Epub 2017 Oct 2. No abstract available.

PMID:
28967886
9.

Preferential suppression of Anopheles gambiae host sequences allows detection of the mosquito eukaryotic microbiome.

Belda E, Coulibaly B, Fofana A, Beavogui AH, Traore SF, Gohl DM, Vernick KD, Riehle MM.

Sci Rep. 2017 Jun 12;7(1):3241. doi: 10.1038/s41598-017-03487-1.

10.

Single-Strand Consensus Sequencing Reveals that HIV Type but not Subtype Significantly Impacts Viral Mutation Frequencies and Spectra.

Rawson JMO, Gohl DM, Landman SR, Roth ME, Meissner ME, Peterson TS, Hodges JS, Beckman KB, Mansky LM.

J Mol Biol. 2017 Jul 21;429(15):2290-2307. doi: 10.1016/j.jmb.2017.05.010. Epub 2017 May 11.

11.

FlpStop, a tool for conditional gene control in Drosophila.

Fisher YE, Yang HH, Isaacman-Beck J, Xie M, Gohl DM, Clandinin TR.

Elife. 2017 Feb 17;6. pii: e22279. doi: 10.7554/eLife.22279.

12.

Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies.

Gohl DM, Vangay P, Garbe J, MacLean A, Hauge A, Becker A, Gould TJ, Clayton JB, Johnson TJ, Hunter R, Knights D, Beckman KB.

Nat Biotechnol. 2016 Sep;34(9):942-9. doi: 10.1038/nbt.3601. Epub 2016 Jul 25.

PMID:
27454739
13.

A Class of Visual Neurons with Wide-Field Properties Is Required for Local Motion Detection.

Fisher YE, Leong JC, Sporar K, Ketkar MD, Gohl DM, Clandinin TR, Silies M.

Curr Biol. 2015 Dec 21;25(24):3178-89. doi: 10.1016/j.cub.2015.11.018. Epub 2015 Dec 5.

14.

Persistent microbial dysbiosis in preterm premature rupture of membranes from onset until delivery.

Baldwin EA, Walther-Antonio M, MacLean AM, Gohl DM, Beckman KB, Chen J, White B, Creedon DJ, Chia N.

PeerJ. 2015 Nov 26;3:e1398. doi: 10.7717/peerj.1398. eCollection 2015.

15.

Motion-detecting circuits in flies: coming into view.

Silies M, Gohl DM, Clandinin TR.

Annu Rev Neurosci. 2014;37:307-27. doi: 10.1146/annurev-neuro-071013-013931. Review.

PMID:
25032498
16.

Flies and humans share a motion estimation strategy that exploits natural scene statistics.

Clark DA, Fitzgerald JE, Ales JM, Gohl DM, Silies MA, Norcia AM, Clandinin TR.

Nat Neurosci. 2014 Feb;17(2):296-303. doi: 10.1038/nn.3600. Epub 2014 Jan 5.

17.

Large-scale mapping of transposable element insertion sites using digital encoding of sample identity.

Gohl DM, Freifeld L, Silies M, Hwa JJ, Horowitz M, Clandinin TR.

Genetics. 2014 Mar;196(3):615-23. doi: 10.1534/genetics.113.159483. Epub 2013 Dec 27.

18.

Modular use of peripheral input channels tunes motion-detecting circuitry.

Silies M, Gohl DM, Fisher YE, Freifeld L, Clark DA, Clandinin TR.

Neuron. 2013 Jul 10;79(1):111-27. doi: 10.1016/j.neuron.2013.04.029.

19.

Specific kinematics and motor-related neurons for aversive chemotaxis in Drosophila.

Gao XJ, Potter CJ, Gohl DM, Silies M, Katsov AY, Clandinin TR, Luo L.

Curr Biol. 2013 Jul 8;23(13):1163-72. doi: 10.1016/j.cub.2013.05.008. Epub 2013 Jun 13.

20.

Motor neurons controlling fluid ingestion in Drosophila.

Manzo A, Silies M, Gohl DM, Scott K.

Proc Natl Acad Sci U S A. 2012 Apr 17;109(16):6307-12. doi: 10.1073/pnas.1120305109. Epub 2012 Apr 2.

21.

A versatile in vivo system for directed dissection of gene expression patterns.

Gohl DM, Silies MA, Gao XJ, Bhalerao S, Luongo FJ, Lin CC, Potter CJ, Clandinin TR.

Nat Methods. 2011 Mar;8(3):231-7.

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