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Items: 34

1.

The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finch.

Michel AJ, Ward LM, Goffredi SK, Dawson KS, Baldassarre DT, Brenner A, Gotanda KM, McCormack JE, Mullin SW, O'Neill A, Tender GS, Uy JAC, Yu K, Orphan VJ, Chaves JA.

Microbiome. 2018 Sep 19;6(1):167. doi: 10.1186/s40168-018-0555-8.

2.

Diet breadth and exploitation of exotic plants shift the core microbiome of Cephaloleia, a group of tropical herbivorous beetles.

Blankenchip CL, Michels DE, Braker HE, Goffredi SK.

PeerJ. 2018 May 17;6:e4793. doi: 10.7717/peerj.4793. eCollection 2018.

3.

An inordinate fondness for Osedax (Siboglinidae: Annelida): Fourteen new species of bone worms from California.

Rouse GW, Goffredi SK, Johnson SB, Vrijenhoek RC.

Zootaxa. 2018 Feb 5;4377(4):451-489. doi: 10.11646/zootaxa.4377.4.1.

PMID:
29690036
4.

Hydrothermal vent fields discovered in the southern Gulf of California clarify role of habitat in augmenting regional diversity.

Goffredi SK, Johnson S, Tunnicliffe V, Caress D, Clague D, Escobar E, Lundsten L, Paduan JB, Rouse G, Salcedo DL, Soto LA, Spelz-Madero R, Zierenberg R, Vrijenhoek R.

Proc Biol Sci. 2017 Jul 26;284(1859). pii: 20170817. doi: 10.1098/rspb.2017.0817.

5.

The specific and exclusive microbiome of the deep-sea bone-eating snail, Rubyspira osteovora.

Aronson HS, Zellmer AJ, Goffredi SK.

FEMS Microbiol Ecol. 2017 Mar 1;93(3). doi: 10.1093/femsec/fiw250.

PMID:
27986828
6.

Decomposition of plant-sourced carbon compounds by heterotrophic betaproteobacteria isolated from a tropical Costa Rican bromeliad.

Klann J, McHenry A, Montelongo C, Goffredi SK.

Microbiologyopen. 2016 Jun;5(3):479-89. doi: 10.1002/mbo3.344. Epub 2016 Feb 25.

7.

A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes.

Abdul Rahman N, Parks DH, Willner DL, Engelbrektson AL, Goffredi SK, Warnecke F, Scheffrahn RH, Hugenholtz P.

Microbiome. 2015 Feb 25;3:5. doi: 10.1186/s40168-015-0067-8. eCollection 2015.

8.

Transcriptomics in the tropics: Total RNA-based profiling of Costa Rican bromeliad-associated communities.

Goffredi SK, Jang GE, Haroon MF.

Comput Struct Biotechnol J. 2014 Dec 13;13:18-23. doi: 10.1016/j.csbj.2014.12.001. eCollection 2015.

9.

Symbiont polyphyly, co-evolution, and necessity in pentatomid stinkbugs from Costa Rica.

Bistolas KS, Sakamoto RI, Fernandes JA, Goffredi SK.

Front Microbiol. 2014 Jul 15;5:349. doi: 10.3389/fmicb.2014.00349. eCollection 2014.

10.

Distribution and dietary regulation of an associated facultative Rhizobiales-related bacterium in the omnivorous giant tropical ant, Paraponera clavata.

Larson HK, Goffredi SK, Parra EL, Vargas O, Pinto-Tomas AA, McGlynn TP.

Naturwissenschaften. 2014 May;101(5):397-406. doi: 10.1007/s00114-014-1168-0. Epub 2014 Mar 30.

PMID:
24682514
11.

Genomic versatility and functional variation between two dominant heterotrophic symbionts of deep-sea Osedax worms.

Goffredi SK, Yi H, Zhang Q, Klann JE, Struve IA, Vrijenhoek RC, Brown CT.

ISME J. 2014 Apr;8(4):908-24. doi: 10.1038/ismej.2013.201. Epub 2013 Nov 14.

12.

Ontogenetic variation in epibiont community structure in the deep-sea yeti crab, Kiwa puravida: convergence among crustaceans.

Goffredi SK, Gregory A, Jones WJ, Morella NM, Sakamoto RI.

Mol Ecol. 2014 Mar;23(6):1457-72. doi: 10.1111/mec.12439. Epub 2013 Aug 16.

PMID:
23952239
13.

Affiliations between bacteria and marine fish leeches (Piscicolidae), with emphasis on a deep-sea species from Monterey Canyon, CA.

Goffredi SK, Morella NM, Pulcrano ME.

Environ Microbiol. 2012 Sep;14(9):2429-44. doi: 10.1111/j.1462-2920.2012.02798.x. Epub 2012 Jun 11.

PMID:
22681178
14.

A hydrothermal seep on the Costa Rica margin: middle ground in a continuum of reducing ecosystems.

Levin LA, Orphan VJ, Rouse GW, Rathburn AE, Ussler W 3rd, Cook GS, Goffredi SK, Perez EM, Waren A, Grupe BM, Chadwick G, Strickrott B.

Proc Biol Sci. 2012 Jul 7;279(1738):2580-8. doi: 10.1098/rspb.2012.0205. Epub 2012 Mar 7.

15.

Bromeliad catchments as habitats for methanogenesis in tropical rainforest canopies.

Goffredi SK, Jang GE, Woodside WT, Ussler W 3rd.

Front Microbiol. 2011 Dec 27;2:256. doi: 10.3389/fmicb.2011.00256. eCollection 2011.

16.

Not whale-fall specialists, Osedax worms also consume fishbones.

Rouse GW, Goffredi SK, Johnson SB, Vrijenhoek RC.

Biol Lett. 2011 Oct 23;7(5):736-9. doi: 10.1098/rsbl.2011.0202. Epub 2011 Apr 13.

17.

Aquatic microbial habitats within a neotropical rainforest: bromeliads and pH-associated trends in bacterial diversity and composition.

Goffredi SK, Kantor AH, Woodside WT.

Microb Ecol. 2011 Apr;61(3):529-42. doi: 10.1007/s00248-010-9781-8. Epub 2010 Dec 21.

PMID:
21174086
18.

Indigenous ectosymbiotic bacteria associated with diverse hydrothermal vent invertebrates.

Goffredi SK.

Environ Microbiol Rep. 2010 Aug;2(4):479-88. doi: 10.1111/j.1758-2229.2010.00136.x. Epub 2010 Feb 8.

PMID:
23766219
19.

Bacterial community shifts in taxa and diversity in response to localized organic loading in the deep sea.

Goffredi SK, Orphan VJ.

Environ Microbiol. 2010 Feb;12(2):344-63. doi: 10.1111/j.1462-2920.2009.02072.x. Epub 2009 Oct 2.

PMID:
19799620
20.

Epibiotic bacteria associated with the recently discovered Yeti crab, Kiwa hirsuta.

Goffredi SK, Jones WJ, Erhlich H, Springer A, Vrijenhoek RC.

Environ Microbiol. 2008 Oct;10(10):2623-34. doi: 10.1111/j.1462-2920.2008.01684.x. Epub 2008 Jun 28.

PMID:
18564185
21.

Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics.

Pernthaler A, Dekas AE, Brown CT, Goffredi SK, Embaye T, Orphan VJ.

Proc Natl Acad Sci U S A. 2008 May 13;105(19):7052-7. doi: 10.1073/pnas.0711303105. Epub 2008 May 8.

22.

Temporal evolution of methane cycling and phylogenetic diversity of archaea in sediments from a deep-sea whale-fall in Monterey Canyon, California.

Goffredi SK, Wilpiszeski R, Lee R, Orphan VJ.

ISME J. 2008 Feb;2(2):204-20. doi: 10.1038/ismej.2007.103. Epub 2008 Jan 24.

PMID:
18219285
23.

Description and relationships of Chaetopterus pugaporcinus, an unusual pelagic polychaete (Annelida, Chaetopteridae).

Osborn KJ, Rouse GW, Goffredi SK, Robison BH.

Biol Bull. 2007 Feb;212(1):40-54.

PMID:
17301330
24.

Genetic diversity and potential function of microbial symbionts associated with newly discovered species of Osedax polychaete worms.

Goffredi SK, Johnson SB, Vrijenhoek RC.

Appl Environ Microbiol. 2007 Apr;73(7):2314-23. Epub 2007 Feb 2.

25.

Molecular detection of marine invertebrate larvae.

Goffredi SK, Jones WJ, Scholin CA, Marin R 3rd, Vrijenhoek RC.

Mar Biotechnol (NY). 2006 Mar-Apr;8(2):149-60. Epub 2006 Jan 1.

PMID:
16380809
26.

Evolutionary innovation: a bone-eating marine symbiosis.

Goffredi SK, Orphan VJ, Rouse GW, Jahnke L, Embaye T, Turk K, Lee R, Vrijenhoek RC.

Environ Microbiol. 2005 Sep;7(9):1369-78.

PMID:
16104860
27.

Osedax: bone-eating marine worms with dwarf males.

Rouse GW, Goffredi SK, Vrijenhoek RC.

Science. 2004 Jul 30;305(5684):668-71.

28.

Novel forms of structural integration between microbes and a hydrothermal vent gastropod from the Indian Ocean.

Goffredi SK, Warén A, Orphan VJ, Van Dover CL, Vrijenhoek RC.

Appl Environ Microbiol. 2004 May;70(5):3082-90.

29.

A hot-vent gastropod with iron sulfide dermal sclerites.

Warén A, Bengtson S, Goffredi SK, Van Dover CL.

Science. 2003 Nov 7;302(5647):1007. No abstract available.

30.

Aggregations of egg-brooding deep-sea fish and cephalopods on the Gorda Escarpment: a reproductive hot spot.

Drazen JC, Goffredi SK, Schlining B, Stakes DS.

Biol Bull. 2003 Aug;205(1):1-7. No abstract available.

PMID:
12917216
31.

Biogeography and ecological setting of Indian Ocean hydrothermal vents.

Van Dover CL, Humphris SE, Fornari D, Cavanaugh CM, Collier R, Goffredi SK, Hashimoto J, Lilley MD, Reysenbach AL, Shank TM, Von Damm KL, Banta A, Gallant RM, Gotz D, Green D, Hall J, Harmer TL, Hurtado LA, Johnson P, McKiness ZP, Meredith C, Olson E, Pan IL, Turnipseed M, Won Y, Young CR 3rd, Vrijenhoek RC.

Science. 2001 Oct 26;294(5543):818-23. Epub 2001 Sep 13.

32.

Physiological Functioning of Carbonic Anhydrase in the Hydrothermal Vent Tubeworm Riftia Pachyptila.

Goffredi SK, Girguis PR, Childress JJ, Desaulniers NT.

Biol Bull. 1999 Jun;196(3):257-264. doi: 10.2307/1542950.

PMID:
28296490
33.

The ionic composition of the hydrothermal vent tube worm Riftia pachyptila: evidence for the elimination of SO2-4SO and H+ and for a Cl-/HCO-3HCO shift.

Goffredi SK, Childress JJ, Lallier FH, Desaulniers NT.

Physiol Biochem Zool. 1999 May-Jun;72(3):296-306.

PMID:
10222324
34.

Sulfide acquisition by the vent worm Riftia pachyptila appears to be via uptake of HS-, rather than H2S.

Goffredi SK, Childress JJ, Desaulniers NT, Lallier FJ.

J Exp Biol. 1997 Oct;200(Pt 20):2609-16.

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