Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 17

1.

Enabling precision medicine via standard communication of HTS provenance, analysis, and results.

Alterovitz G, Dean D, Goble C, Crusoe MR, Soiland-Reyes S, Bell A, Hayes A, Suresh A, Purkayastha A, King CH, Taylor D, Johanson E, Thompson EE, Donaldson E, Morizono H, Tsang H, Vora JK, Goecks J, Yao J, Almeida JS, Keeney J, Addepalli K, Krampis K, Smith KM, Guo L, Walderhaug M, Schito M, Ezewudo M, Guimera N, Walsh P, Kahsay R, Gottipati S, Rodwell TC, Bloom T, Lai Y, Simonyan V, Mazumder R.

PLoS Biol. 2018 Dec 31;16(12):e3000099. doi: 10.1371/journal.pbio.3000099. eCollection 2018 Dec.

2.

Practical Computational Reproducibility in the Life Sciences.

Grüning B, Chilton J, Köster J, Dale R, Soranzo N, van den Beek M, Goecks J, Backofen R, Nekrutenko A, Taylor J.

Cell Syst. 2018 Jun 27;6(6):631-635. doi: 10.1016/j.cels.2018.03.014.

3.

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update.

Afgan E, Baker D, Batut B, van den Beek M, Bouvier D, Cech M, Chilton J, Clements D, Coraor N, Grüning BA, Guerler A, Hillman-Jackson J, Hiltemann S, Jalili V, Rasche H, Soranzo N, Goecks J, Taylor J, Nekrutenko A, Blankenberg D.

Nucleic Acids Res. 2018 Jul 2;46(W1):W537-W544. doi: 10.1093/nar/gky379.

4.

Biology Needs Evolutionary Software Tools: Let's Build Them Right.

Nekrutenko A, Team G, Goecks J, Taylor J, Blankenberg D.

Mol Biol Evol. 2018 Jun 1;35(6):1372-1375. doi: 10.1093/molbev/msy084.

5.

Biocompute Objects-A Step towards Evaluation and Validation of Biomedical Scientific Computations.

Simonyan V, Goecks J, Mazumder R.

PDA J Pharm Sci Technol. 2017 Mar-Apr;71(2):136-146. doi: 10.5731/pdajpst.2016.006734. Epub 2016 Dec 14.

6.

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update.

Afgan E, Baker D, van den Beek M, Blankenberg D, Bouvier D, Čech M, Chilton J, Clements D, Coraor N, Eberhard C, Grüning B, Guerler A, Hillman-Jackson J, Von Kuster G, Rasche E, Soranzo N, Turaga N, Taylor J, Nekrutenko A, Goecks J.

Nucleic Acids Res. 2016 Jul 8;44(W1):W3-W10. doi: 10.1093/nar/gkw343. Epub 2016 May 2.

7.

Impact of germline and somatic missense variations on drug binding sites.

Yan C, Pattabiraman N, Goecks J, Lam P, Nayak A, Pan Y, Torcivia-Rodriguez J, Voskanian A, Wan Q, Mazumder R.

Pharmacogenomics J. 2017 Mar;17(2):128-136. doi: 10.1038/tpj.2015.97. Epub 2016 Jan 26.

8.

A quick guide for building a successful bioinformatics community.

Budd A, Corpas M, Brazas MD, Fuller JC, Goecks J, Mulder NJ, Michaut M, Ouellette BF, Pawlik A, Blomberg N.

PLoS Comput Biol. 2015 Feb 5;11(2):e1003972. doi: 10.1371/journal.pcbi.1003972. eCollection 2015 Feb.

9.

Open pipelines for integrated tumor genome profiles reveal differences between pancreatic cancer tumors and cell lines.

Goecks J, El-Rayes BF, Maithel SK, Khoury HJ, Taylor J, Rossi MR.

Cancer Med. 2015 Mar;4(3):392-403. doi: 10.1002/cam4.360. Epub 2015 Jan 4.

10.

The Bioinformatics Open Source Conference (BOSC) 2013.

Harris NL, Cock PJ, Chapman BA, Goecks J, Hotz HR, Lapp H.

Bioinformatics. 2015 Jan 15;31(2):299-300. doi: 10.1093/bioinformatics/btu413. Epub 2014 Jul 14. No abstract available.

11.

Dietary and flight energetic adaptations in a salivary gland transcriptome of an insectivorous bat.

Phillips CJ, Phillips CD, Goecks J, Lessa EP, Sotero-Caio CG, Tandler B, Gannon MR, Baker RJ.

PLoS One. 2014 Jan 14;9(1):e83512. doi: 10.1371/journal.pone.0083512. eCollection 2014.

12.

Web-based visual analysis for high-throughput genomics.

Goecks J, Eberhard C, Too T; Galaxy Team, Nekrutenko A, Taylor J.

BMC Genomics. 2013 Jun 13;14:397. doi: 10.1186/1471-2164-14-397.

13.

Integrative approach reveals composition of endoparasitoid wasp venoms.

Goecks J, Mortimer NT, Mobley JA, Bowersock GJ, Taylor J, Schlenke TA.

PLoS One. 2013 May 23;8(5):e64125. doi: 10.1371/journal.pone.0064125. Print 2013.

14.

Parasitoid wasp venom SERCA regulates Drosophila calcium levels and inhibits cellular immunity.

Mortimer NT, Goecks J, Kacsoh BZ, Mobley JA, Bowersock GJ, Taylor J, Schlenke TA.

Proc Natl Acad Sci U S A. 2013 Jun 4;110(23):9427-32. doi: 10.1073/pnas.1222351110. Epub 2013 May 20.

15.

NGS analyses by visualization with Trackster.

Goecks J, Coraor N; Galaxy Team, Nekrutenko A, Taylor J.

Nat Biotechnol. 2012 Nov;30(11):1036-9. doi: 10.1038/nbt.2404. No abstract available.

16.

Turning pipe dreams into reality.

Li P, Goecks J, Lee TL.

Genome Biol. 2012 Aug 30;13(8):318. doi: 10.1186/gb4039.

17.

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences.

Goecks J, Nekrutenko A, Taylor J; Galaxy Team.

Genome Biol. 2010;11(8):R86. doi: 10.1186/gb-2010-11-8-r86. Epub 2010 Aug 25.

Supplemental Content

Loading ...
Support Center