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Items: 22

1.

Synthetic Biology Open Language (SBOL) Version 2.3.

Madsen C, Goñi Moreno A, P U, Palchick Z, Roehner N, Atallah C, Bartley B, Choi K, Cox RS, Gorochowski T, Grünberg R, Macklin C, McLaughlin J, Meng X, Nguyen T, Pocock M, Samineni M, Scott-Brown J, Tarter Y, Zhang M, Zhang Z, Zundel Z, Beal J, Bissell M, Clancy K, Gennari JH, Misirli G, Myers C, Oberortner E, Sauro H, Wipat A.

J Integr Bioinform. 2019 Jun 13. pii: /j/jib.ahead-of-print/jib-2019-0025/jib-2019-0025.xml. doi: 10.1515/jib-2019-0025. [Epub ahead of print]

PMID:
31199770
2.

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.

Madsen C, Goni Moreno A, Palchick Z, P U, Roehner N, Bartley B, Bhatia S, Bhakta S, Bissell M, Clancy K, Cox RS, Gorochowski T, Grunberg R, Luna A, McLaughlin J, Nguyen T, Le Novere N, Pocock M, Sauro H, Scott-Brown J, Sexton JT, Stan GB, Tabor JJ, Voigt CA, Zundel Z, Myers C, Beal J, Wipat A.

J Integr Bioinform. 2019 Jun 13. pii: /j/jib.ahead-of-print/jib-2018-0101/jib-2018-0101.xml. doi: 10.1515/jib-2018-0101. [Epub ahead of print]

PMID:
31199768
3.

SBOL-OWL: An Ontological Approach for Formal and Semantic Representation of Synthetic Biology Information.

Mısırlı G, Taylor R, Goñi-Moreno A, McLaughlin JA, Myers C, Gennari JH, Lord P, Wipat A.

ACS Synth Biol. 2019 May 14. doi: 10.1021/acssynbio.8b00532. [Epub ahead of print]

PMID:
31059645
4.

Enabling the Advanced Bioeconomy through Public Policy Supporting Biofoundries and Engineering Biology.

Kitney R, Adeogun M, Fujishima Y, Goñi-Moreno Á, Johnson R, Maxon M, Steedman S, Ward S, Winickoff D, Philp J.

Trends Biotechnol. 2019 Apr 26. pii: S0167-7799(19)30076-9. doi: 10.1016/j.tibtech.2019.03.017. [Epub ahead of print]

PMID:
31036350
5.

High-Performance Biocomputing in Synthetic Biology-Integrated Transcriptional and Metabolic Circuits.

Goñi-Moreno A, Nikel PI.

Front Bioeng Biotechnol. 2019 Mar 11;7:40. doi: 10.3389/fbioe.2019.00040. eCollection 2019.

6.

Dynamical Task Switching in Cellular Computers.

Goñi-Moreno A, de la Cruz F, Rodríguez-Patón A, Amos M.

Life (Basel). 2019 Jan 26;9(1). pii: E14. doi: 10.3390/life9010014.

7.

Spatial organization of the gene expression hardware in Pseudomonas putida.

Kim J, Goñi-Moreno A, Calles B, de Lorenzo V.

Environ Microbiol. 2019 May;21(5):1645-1658. doi: 10.1111/1462-2920.14544. Epub 2019 Mar 11.

PMID:
30689295
8.

Bio-Algorithmic Workflows for Standardized Synthetic Biology Constructs.

Goñi-Moreno A, de Lorenzo V.

Methods Mol Biol. 2018;1772:363-372. doi: 10.1007/978-1-4939-7795-6_20.

PMID:
29754239
9.

SynBioHub: A Standards-Enabled Design Repository for Synthetic Biology.

McLaughlin JA, Myers CJ, Zundel Z, Mısırlı G, Zhang M, Ofiteru ID, Goñi-Moreno A, Wipat A.

ACS Synth Biol. 2018 Feb 16;7(2):682-688. doi: 10.1021/acssynbio.7b00403. Epub 2018 Jan 30.

PMID:
29316788
10.

Cell differentiation defines acute and chronic infection cell types in Staphylococcus aureus.

García-Betancur JC, Goñi-Moreno A, Horger T, Schott M, Sharan M, Eikmeier J, Wohlmuth B, Zernecke A, Ohlsen K, Kuttler C, Lopez D.

Elife. 2017 Sep 12;6. pii: e28023. doi: 10.7554/eLife.28023.

11.

CSBB: synthetic biology research at Newcastle University.

Goñi-Moreno A, Wipat A, Krasnogor N.

Biochem Soc Trans. 2017 Jun 15;45(3):781-783. doi: 10.1042/BST20160437.

12.

Deconvolution of Gene Expression Noise into Spatial Dynamics of Transcription Factor-Promoter Interplay.

Goñi-Moreno Á, Benedetti I, Kim J, de Lorenzo V.

ACS Synth Biol. 2017 Jul 21;6(7):1359-1369. doi: 10.1021/acssynbio.6b00397. Epub 2017 Apr 17.

PMID:
28355056
13.

A Metabolic Widget Adjusts the Phosphoenolpyruvate-Dependent Fructose Influx in Pseudomonas putida.

Chavarría M, Goñi-Moreno Á, de Lorenzo V, Nikel PI.

mSystems. 2016 Dec 6;1(6). pii: e00154-16. eCollection 2016 Nov-Dec.

14.

An Implementation-Focused Bio/Algorithmic Workflow for Synthetic Biology.

Goñi-Moreno A, Carcajona M, Kim J, Martínez-García E, Amos M, de Lorenzo V.

ACS Synth Biol. 2016 Oct 21;5(10):1127-1135. Epub 2016 Aug 9.

PMID:
27454551
15.

Physical Forces Shape Group Identity of Swimming Pseudomonas putida Cells.

Espeso DR, Martínez-García E, de Lorenzo V, Goñi-Moreno Á.

Front Microbiol. 2016 Sep 16;7:1437. eCollection 2016.

16.

CellShape: A user-friendly image analysis tool for quantitative visualization of bacterial cell factories inside.

Goñi-Moreno Á, Kim J, de Lorenzo V.

Biotechnol J. 2017 Feb;12(2). doi: 10.1002/biot.201600323. Epub 2016 Sep 7.

PMID:
27492366
17.

The glycerol-dependent metabolic persistence of Pseudomonas putida KT2440 reflects the regulatory logic of the GlpR repressor.

Nikel PI, Romero-Campero FJ, Zeidman JA, Goñi-Moreno Á, de Lorenzo V.

MBio. 2015 Mar 31;6(2). pii: e00340-15. doi: 10.1128/mBio.00340-15.

18.

SEVA 2.0: an update of the Standard European Vector Architecture for de-/re-construction of bacterial functionalities.

Martínez-García E, Aparicio T, Goñi-Moreno A, Fraile S, de Lorenzo V.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1183-9. doi: 10.1093/nar/gku1114. Epub 2014 Nov 11.

19.

Multicellular computing using conjugation for wiring.

Goñi-Moreno A, Amos M, de la Cruz F.

PLoS One. 2013 Jun 20;8(6):e65986. doi: 10.1371/journal.pone.0065986. Print 2013.

20.

A reconfigurable NAND/NOR genetic logic gate.

Goñi-Moreno A, Amos M.

BMC Syst Biol. 2012 Sep 18;6:126. doi: 10.1186/1752-0509-6-126.

21.

Continuous computation in engineered gene circuits.

Goñi-Moreno A, Amos M.

Biosystems. 2012 Jul;109(1):52-6. doi: 10.1016/j.biosystems.2012.02.001. Epub 2012 Feb 23.

PMID:
22387968
22.

Model for a population-based microbial oscillator.

Goñi-Moreno A, Amos M.

Biosystems. 2011 Sep;105(3):286-94. doi: 10.1016/j.biosystems.2011.05.011. Epub 2011 Jun 6.

PMID:
21679747

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