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PlantSimLab - a modeling and simulation web tool for plant biologists.

Ha S, Dimitrova E, Hoops S, Altarawy D, Ansariola M, Deb D, Glazebrook J, Hillmer R, Shahin H, Katagiri F, McDowell J, Megraw M, Setubal J, Tyler BM, Laubenbacher R.

BMC Bioinformatics. 2019 Oct 21;20(1):508. doi: 10.1186/s12859-019-3094-9.


Measuring Pectin Properties to Track Cell Wall Alterations During Plant-Pathogen Interactions.

Bethke G, Glazebrook J.

Methods Mol Biol. 2019;1991:55-60. doi: 10.1007/978-1-4939-9458-8_6.


Different Modes of Negative Regulation of Plant Immunity by Calmodulin-Related Genes.

Lu Y, Truman W, Liu X, Bethke G, Zhou M, Myers CL, Katagiri F, Glazebrook J.

Plant Physiol. 2018 Apr;176(4):3046-3061. doi: 10.1104/pp.17.01209. Epub 2018 Feb 15.


Plant biotic interactions: from conflict to collaboration.

Glazebrook J, Roby D.

Plant J. 2018 Feb;93(4):589-591. doi: 10.1111/tpj.13812. No abstract available.


The quantum physics of synaptic communication via the SNARE protein complex.

Georgiev DD, Glazebrook JF.

Prog Biophys Mol Biol. 2018 Jul;135:16-29. doi: 10.1016/j.pbiomolbio.2018.01.006. Epub 2018 Jan 31. Review.


WRKY70 prevents axenic activation of plant immunity by direct repression of SARD1.

Zhou M, Lu Y, Bethke G, Harrison BT, Hatsugai N, Katagiri F, Glazebrook J.

New Phytol. 2018 Jan;217(2):700-712. doi: 10.1111/nph.14846. Epub 2017 Oct 27.


Comparative Genomic Analyses of Clavibacter michiganensis subsp. insidiosus and Pathogenicity on Medicago truncatula.

Lu Y, Ishimaru CA, Glazebrook J, Samac DA.

Phytopathology. 2018 Feb;108(2):172-185. doi: 10.1094/PHYTO-05-17-0171-R. Epub 2017 Dec 18.


A plant effector-triggered immunity signaling sector is inhibited by pattern-triggered immunity.

Hatsugai N, Igarashi D, Mase K, Lu Y, Tsuda Y, Chakravarthy S, Wei HL, Foley JW, Collmer A, Glazebrook J, Katagiri F.

EMBO J. 2017 Sep 15;36(18):2758-2769. doi: 10.15252/embj.201796529. Epub 2017 Aug 15.


Disrupted development and imbalanced function in the global neuronal workspace: a positive-feedback mechanism for the emergence of ASD in early infancy.

Fields C, Glazebrook JF.

Cogn Neurodyn. 2017 Feb;11(1):1-21. doi: 10.1007/s11571-016-9419-8. Epub 2016 Nov 15. Review.


Pectin Biosynthesis Is Critical for Cell Wall Integrity and Immunity in Arabidopsis thaliana.

Bethke G, Thao A, Xiong G, Li B, Soltis NE, Hatsugai N, Hillmer RA, Katagiri F, Kliebenstein DJ, Pauly M, Glazebrook J.

Plant Cell. 2016 Feb;28(2):537-56. doi: 10.1105/tpc.15.00404. Epub 2016 Jan 26.


Identification of differentially expressed genes between developing seeds of different soybean cultivars.

Lin R, Glazebrook J, Katagiri F, Orf JH, Gibson SI.

Genom Data. 2015 Aug 13;6:92-8. doi: 10.1016/j.gdata.2015.08.005. eCollection 2015 Dec.


Functional characterization of PCRK1, a putative protein kinase with a role in immunity.

Sreekanta S, Haruta M, Minkoff BB, Glazebrook J.

Plant Signal Behav. 2015;10(10):e1063759. doi: 10.1080/15592324.2015.1063759. Epub 2015 Aug 3.


Reassess the t Test: Interact with All Your Data via ANOVA.

Brady SM, Burow M, Busch W, Carlborg Ö, Denby KJ, Glazebrook J, Hamilton ES, Harmer SL, Haswell ES, Maloof JN, Springer NM, Kliebenstein DJ.

Plant Cell. 2015 Aug;27(8):2088-94. doi: 10.1105/tpc.15.00238. Epub 2015 Jul 28.


Putative Serine Protease Effectors of Clavibacter michiganensis Induce a Hypersensitive Response in the Apoplast of Nicotiana Species.

Lu Y, Hatsugai N, Katagiri F, Ishimaru CA, Glazebrook J.

Mol Plant Microbe Interact. 2015 Nov;28(11):1216-26. doi: 10.1094/MPMI-02-15-0036-R. Epub 2015 Oct 2.


Complete Genome Sequence of Clavibacter michiganensis subsp. insidiosus R1-1 Using PacBio Single-Molecule Real-Time Technology.

Lu Y, Samac DA, Glazebrook J, Ishimaru CA.

Genome Announc. 2015 May 7;3(3). pii: e00396-15. doi: 10.1128/genomeA.00396-15.


The receptor-like cytoplasmic kinase PCRK1 contributes to pattern-triggered immunity against Pseudomonas syringae in Arabidopsis thaliana.

Sreekanta S, Bethke G, Hatsugai N, Tsuda K, Thao A, Wang L, Katagiri F, Glazebrook J.

New Phytol. 2015 Jul;207(1):78-90. doi: 10.1111/nph.13345. Epub 2015 Feb 25.


The mRNA decay factor PAT1 functions in a pathway including MAP kinase 4 and immune receptor SUMM2.

Roux ME, Rasmussen MW, Palma K, Lolle S, Regué ÀM, Bethke G, Glazebrook J, Zhang W, Sieburth L, Larsen MR, Mundy J, Petersen M.

EMBO J. 2015 Mar 4;34(5):593-608. doi: 10.15252/embj.201488645. Epub 2015 Jan 20.


Pathologies in functional connectivity, feedback control and robustness: a global workspace perspective on autism spectrum disorders.

Glazebrook JF, Wallace R.

Cogn Process. 2015 Feb;16(1):1-16. doi: 10.1007/s10339-014-0636-y. Epub 2014 Oct 18. Review.


Arabidopsis PECTIN METHYLESTERASEs contribute to immunity against Pseudomonas syringae.

Bethke G, Grundman RE, Sreekanta S, Truman W, Katagiri F, Glazebrook J.

Plant Physiol. 2014 Feb;164(2):1093-107. doi: 10.1104/pp.113.227637. Epub 2013 Dec 23.


Dual regulation of gene expression mediated by extended MAPK activation and salicylic acid contributes to robust innate immunity in Arabidopsis thaliana.

Tsuda K, Mine A, Bethke G, Igarashi D, Botanga CJ, Tsuda Y, Glazebrook J, Sato M, Katagiri F.

PLoS Genet. 2013;9(12):e1004015. doi: 10.1371/journal.pgen.1004015. Epub 2013 Dec 12.


Are skin scar characteristics associated with the degree of pelvic adhesions at laparoscopy?

Stocker LJ, Glazebrook JE, Cheong YC.

Fertil Steril. 2014 Feb;101(2):501-5. doi: 10.1016/j.fertnstert.2013.10.026. Epub 2013 Nov 26.


The CALMODULIN-BINDING PROTEIN60 family includes both negative and positive regulators of plant immunity.

Truman W, Sreekanta S, Lu Y, Bethke G, Tsuda K, Katagiri F, Glazebrook J.

Plant Physiol. 2013 Dec;163(4):1741-51. doi: 10.1104/pp.113.227108. Epub 2013 Oct 17.


Pattern-triggered immunity suppresses programmed cell death triggered by fumonisin b1.

Igarashi D, Bethke G, Xu Y, Tsuda K, Glazebrook J, Katagiri F.

PLoS One. 2013;8(4):e60769. doi: 10.1371/journal.pone.0060769. Epub 2013 Apr 1.


Spatio-temporal expression patterns of Arabidopsis thaliana and Medicago truncatula defensin-like genes.

Tesfaye M, Silverstein KA, Nallu S, Wang L, Botanga CJ, Gomez SK, Costa LM, Harrison MJ, Samac DA, Glazebrook J, Katagiri F, Gutierrez-Marcos JF, Vandenbosch KA.

PLoS One. 2013;8(3):e58992. doi: 10.1371/journal.pone.0058992. Epub 2013 Mar 18.


Co-expression analysis identifies putative targets for CBP60g and SARD1 regulation.

Truman W, Glazebrook J.

BMC Plant Biol. 2012 Nov 16;12:216. doi: 10.1186/1471-2229-12-216.


Metabolite profiling of Arabidopsis inoculated with Alternaria brassicicola reveals that ascorbate reduces disease severity.

Botanga CJ, Bethke G, Chen Z, Gallie DR, Fiehn O, Glazebrook J.

Mol Plant Microbe Interact. 2012 Dec;25(12):1628-38. doi: 10.1094/MPMI-07-12-0179-R.


Biased competition in the global workspace: comment on "Consciousness, crosstalk and the mereological fallacy: an evolutionary perspective" by R. Wallace.

Glazebrook JF.

Phys Life Rev. 2012 Dec;9(4):454-5; discussion 458-9. doi: 10.1016/j.plrev.2012.10.002. Epub 2012 Oct 13. No abstract available.


MPK11-a fourth elicitor-responsive mitogen-activated protein kinase in Arabidopsis thaliana.

Eschen-Lippold L, Bethke G, Palm-Forster MA, Pecher P, Bauer N, Glazebrook J, Scheel D, Lee J.

Plant Signal Behav. 2012 Sep 1;7(9):1203-5. doi: 10.4161/psb.21323. Epub 2012 Aug 17.


Cauda equina compression post lumbar discography.

Phillips H, Glazebrook JJ, Timothy J.

Acta Neurochir (Wien). 2012 Jun;154(6):1033-6. doi: 10.1007/s00701-012-1322-4. Epub 2012 Apr 15.


Activation of the Arabidopsis thaliana mitogen-activated protein kinase MPK11 by the flagellin-derived elicitor peptide, flg22.

Bethke G, Pecher P, Eschen-Lippold L, Tsuda K, Katagiri F, Glazebrook J, Scheel D, Lee J.

Mol Plant Microbe Interact. 2012 Apr;25(4):471-80. doi: 10.1094/MPMI-11-11-0281. Erratum in: Mol Plant Microbe Interact. 2015 Apr;28(4):508.


An efficient Agrobacterium-mediated transient transformation of Arabidopsis.

Tsuda K, Qi Y, Nguyen le V, Bethke G, Tsuda Y, Glazebrook J, Katagiri F.

Plant J. 2012 Feb;69(4):713-9. doi: 10.1111/j.1365-313X.2011.04819.x. Epub 2011 Nov 17.


Physical association of Arabidopsis hypersensitive induced reaction proteins (HIRs) with the immune receptor RPS2.

Qi Y, Tsuda K, Nguyen le V, Wang X, Lin J, Murphy AS, Glazebrook J, Thordal-Christensen H, Katagiri F.

J Biol Chem. 2011 Sep 9;286(36):31297-307. doi: 10.1074/jbc.M110.211615. Epub 2011 Jul 13.


Physical association of pattern-triggered immunity (PTI) and effector-triggered immunity (ETI) immune receptors in Arabidopsis.

Qi Y, Tsuda K, Glazebrook J, Katagiri F.

Mol Plant Pathol. 2011 Sep;12(7):702-8. doi: 10.1111/j.1364-3703.2010.00704.x. Epub 2011 Feb 17.


CBP60g and SARD1 play partially redundant critical roles in salicylic acid signaling.

Wang L, Tsuda K, Truman W, Sato M, Nguyen le V, Katagiri F, Glazebrook J.

Plant J. 2011 Sep;67(6):1029-41. doi: 10.1111/j.1365-313X.2011.04655.x. Epub 2011 Jul 6.


Network modeling reveals prevalent negative regulatory relationships between signaling sectors in Arabidopsis immune signaling.

Sato M, Tsuda K, Wang L, Coller J, Watanabe Y, Glazebrook J, Katagiri F.

PLoS Pathog. 2010 Jul 22;6(7):e1001011. doi: 10.1371/journal.ppat.1001011.


Transmission electron microscopy (TEM) freeze substitution of plant tissues.

Weigel D, Glazebrook J.

Cold Spring Harb Protoc. 2010 Jul 1;2010(7):pdb.prot4959. doi: 10.1101/pdb.prot4959.


A putative RNA-binding protein positively regulates salicylic acid-mediated immunity in Arabidopsis.

Qi Y, Tsuda K, Joe A, Sato M, Nguyen le V, Glazebrook J, Alfano JR, Cohen JD, Katagiri F.

Mol Plant Microbe Interact. 2010 Dec;23(12):1573-83. doi: 10.1094/MPMI-05-10-0106.


Endosome-associated CRT1 functions early in resistance gene-mediated defense signaling in Arabidopsis and tobacco.

Kang HG, Oh CS, Sato M, Katagiri F, Glazebrook J, Takahashi H, Kachroo P, Martin GB, Klessig DF.

Plant Cell. 2010 Mar;22(3):918-36. doi: 10.1105/tpc.109.071662. Epub 2010 Mar 23.


Phenotypic analysis of Arabidopsis mutants: bacterial pathogens.

Weigel D, Glazebrook J.

Cold Spring Harb Protoc. 2009 Jul;2009(7):pdb.prot4983. doi: 10.1101/pdb.prot4983.


Quick miniprep for plant DNA isolation.

Weigel D, Glazebrook J.

Cold Spring Harb Protoc. 2009 Mar;2009(3):pdb.prot5179. doi: 10.1101/pdb.prot5179. No abstract available.


Dellaporta miniprep for plant DNA isolation.

Weigel D, Glazebrook J.

Cold Spring Harb Protoc. 2009 Mar;2009(3):pdb.prot5178. doi: 10.1101/pdb.prot5178. No abstract available.


Network properties of robust immunity in plants.

Tsuda K, Sato M, Stoddard T, Glazebrook J, Katagiri F.

PLoS Genet. 2009 Dec;5(12):e1000772. doi: 10.1371/journal.pgen.1000772. Epub 2009 Dec 11.


Olanzapine-induced weight gain in the rat: role of 5-HT2C and histamine H1 receptors.

Kirk SL, Glazebrook J, Grayson B, Neill JC, Reynolds GP.

Psychopharmacology (Berl). 2009 Nov;207(1):119-25. doi: 10.1007/s00213-009-1639-8. Epub 2009 Aug 18.


The interplay between MAMP and SA signaling.

Tsuda K, Glazebrook J, Katagiri F.

Plant Signal Behav. 2008 Jun;3(6):359-61.


Priming in systemic plant immunity.

Jung HW, Tschaplinski TJ, Wang L, Glazebrook J, Greenberg JT.

Science. 2009 Apr 3;324(5923):89-91. doi: 10.1126/science.1170025.


Arabidopsis CaM binding protein CBP60g contributes to MAMP-induced SA accumulation and is involved in disease resistance against Pseudomonas syringae.

Wang L, Tsuda K, Sato M, Cohen JD, Katagiri F, Glazebrook J.

PLoS Pathog. 2009 Feb;5(2):e1000301. doi: 10.1371/journal.ppat.1000301. Epub 2009 Feb 13.


Pattern discovery in expression profiling data.

Katagiri F, Glazebrook J.

Curr Protoc Mol Biol. 2009 Jan;Chapter 22:Unit 22.5. doi: 10.1002/0471142727.mb2205s85.


Overview of mRNA expression profiling using DNA microarrays.

Katagiri F, Glazebrook J.

Curr Protoc Mol Biol. 2009 Jan;Chapter 22:Unit 22.4. doi: 10.1002/0471142727.mb2204s85.


The genetic network controlling the Arabidopsis transcriptional response to Pseudomonas syringae pv. maculicola: roles of major regulators and the phytotoxin coronatine.

Wang L, Mitra RM, Hasselmann KD, Sato M, Lenarz-Wyatt L, Cohen JD, Katagiri F, Glazebrook J.

Mol Plant Microbe Interact. 2008 Nov;21(11):1408-20. doi: 10.1094/MPMI-21-11-1408.


Arabidopsis MAP kinase 4 regulates gene expression through transcription factor release in the nucleus.

Qiu JL, Fiil BK, Petersen K, Nielsen HB, Botanga CJ, Thorgrimsen S, Palma K, Suarez-Rodriguez MC, Sandbech-Clausen S, Lichota J, Brodersen P, Grasser KD, Mattsson O, Glazebrook J, Mundy J, Petersen M.

EMBO J. 2008 Aug 20;27(16):2214-21. doi: 10.1038/emboj.2008.147. Epub 2008 Jul 24.

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