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Ciftify: A framework for surface-based analysis of legacy MR acquisitions.

Dickie EW, Anticevic A, Smith DE, Coalson TS, Manogaran M, Calarco N, Viviano JD, Glasser MF, Van Essen DC, Voineskos AN.

Neuroimage. 2019 May 12. pii: S1053-8119(19)30371-4. doi: 10.1016/j.neuroimage.2019.04.078. [Epub ahead of print]


Classification of temporal ICA components for separating global noise from fMRI data: Reply to Power.

Glasser MF, Coalson TS, Bijsterbosch JD, Harrison SJ, Harms MP, Anticevic A, Van Essen DC, Smith SM.

Neuroimage. 2019 Apr 24;197:435-438. doi: 10.1016/j.neuroimage.2019.04.046. [Epub ahead of print]


Resting state functional connectivity predictors of treatment response to electroconvulsive therapy in depression.

Moreno-Ortega M, Prudic J, Rowny S, Patel GH, Kangarlu A, Lee S, Grinband J, Palomo T, Perera T, Glasser MF, Javitt DC.

Sci Rep. 2019 Mar 25;9(1):5071. doi: 10.1038/s41598-019-41175-4.


Organization of extrastriate and temporal cortex in chimpanzees compared to humans and macaques.

Bryant KL, Glasser MF, Li L, Jae-Cheol Bae J, Jacquez NJ, Alarcón L, Fields A 3rd, Preuss TM.

Cortex. 2019 Feb 22. pii: S0010-9452(19)30062-0. doi: 10.1016/j.cortex.2019.02.010. [Epub ahead of print]


Hierarchical Heterogeneity across Human Cortex Shapes Large-Scale Neural Dynamics.

Demirtaş M, Burt JB, Helmer M, Ji JL, Adkinson BD, Glasser MF, Van Essen DC, Sotiropoulos SN, Anticevic A, Murray JD.

Neuron. 2019 Mar 20;101(6):1181-1194.e13. doi: 10.1016/j.neuron.2019.01.017. Epub 2019 Feb 7.


The Human Connectome Project 7 Tesla retinotopy dataset: Description and population receptive field analysis.

Benson NC, Jamison KW, Arcaro MJ, Vu AT, Glasser MF, Coalson TS, Van Essen DC, Yacoub E, Ugurbil K, Winawer J, Kay K.

J Vis. 2018 Dec 3;18(13):23. doi: 10.1167/18.13.23.


Concurrent analysis of white matter bundles and grey matter networks in the chimpanzee.

Mars RB, O'Muircheartaigh J, Folloni D, Li L, Glasser MF, Jbabdi S, Bryant KL.

Brain Struct Funct. 2019 Apr;224(3):1021-1033. doi: 10.1007/s00429-018-1817-8. Epub 2018 Dec 19.


Reply to Barton and Montgomery: A case for preferential prefrontal cortical expansion.

Donahue CJ, Glasser MF, Preuss TM, Rilling JK, Van Essen DC.

Proc Natl Acad Sci U S A. 2019 Jan 2;116(1):5-6. doi: 10.1073/pnas.1819241116. Epub 2018 Dec 17. No abstract available.


Extending the Human Connectome Project across ages: Imaging protocols for the Lifespan Development and Aging projects.

Harms MP, Somerville LH, Ances BM, Andersson J, Barch DM, Bastiani M, Bookheimer SY, Brown TB, Buckner RL, Burgess GC, Coalson TS, Chappell MA, Dapretto M, Douaud G, Fischl B, Glasser MF, Greve DN, Hodge C, Jamison KW, Jbabdi S, Kandala S, Li X, Mair RW, Mangia S, Marcus D, Mascali D, Moeller S, Nichols TE, Robinson EC, Salat DH, Smith SM, Sotiropoulos SN, Terpstra M, Thomas KM, Tisdall MD, Ugurbil K, van der Kouwe A, Woods RP, Zöllei L, Van Essen DC, Yacoub E.

Neuroimage. 2018 Dec;183:972-984. doi: 10.1016/j.neuroimage.2018.09.060. Epub 2018 Sep 24.


Parcellating Cerebral Cortex: How Invasive Animal Studies Inform Noninvasive Mapmaking in Humans.

Van Essen DC, Glasser MF.

Neuron. 2018 Aug 22;99(4):640-663. doi: 10.1016/j.neuron.2018.07.002. Review.


Development and Evolution of Cerebral and Cerebellar Cortex.

Van Essen DC, Donahue CJ, Glasser MF.

Brain Behav Evol. 2018;91(3):158-169. doi: 10.1159/000489943. Epub 2018 Aug 10. Review.


The impact of traditional neuroimaging methods on the spatial localization of cortical areas.

Coalson TS, Van Essen DC, Glasser MF.

Proc Natl Acad Sci U S A. 2018 Jul 3;115(27):E6356-E6365. doi: 10.1073/pnas.1801582115. Epub 2018 Jun 20.


Construction of a neonatal cortical surface atlas using Multimodal Surface Matching in the Developing Human Connectome Project.

Bozek J, Makropoulos A, Schuh A, Fitzgibbon S, Wright R, Glasser MF, Coalson TS, O'Muircheartaigh J, Hutter J, Price AN, Cordero-Grande L, Teixeira RPAG, Hughes E, Tusor N, Baruteau KP, Rutherford MA, Edwards AD, Hajnal JV, Smith SM, Rueckert D, Jenkinson M, Robinson EC.

Neuroimage. 2018 Oct 1;179:11-29. doi: 10.1016/j.neuroimage.2018.06.018. Epub 2018 Jun 14.


Using temporal ICA to selectively remove global noise while preserving global signal in functional MRI data.

Glasser MF, Coalson TS, Bijsterbosch JD, Harrison SJ, Harms MP, Anticevic A, Van Essen DC, Smith SM.

Neuroimage. 2018 Nov 1;181:692-717. doi: 10.1016/j.neuroimage.2018.04.076. Epub 2018 Aug 2.


Quantitative assessment of prefrontal cortex in humans relative to nonhuman primates.

Donahue CJ, Glasser MF, Preuss TM, Rilling JK, Van Essen DC.

Proc Natl Acad Sci U S A. 2018 May 29;115(22):E5183-E5192. doi: 10.1073/pnas.1721653115. Epub 2018 May 8.


Reproducibility of myelin content-based human habenula segmentation at 3 Tesla.

Kim JW, Naidich TP, Joseph J, Nair D, Glasser MF, O'halloran R, Doucet GE, Lee WH, Krinsky H, Paulino A, Glahn DC, Anticevic A, Frangou S, Xu J.

Hum Brain Mapp. 2018 Jul;39(7):3058-3071. doi: 10.1002/hbm.24060. Epub 2018 Mar 26.


Dynamic patterns of cortical expansion during folding of the preterm human brain.

Garcia KE, Robinson EC, Alexopoulos D, Dierker DL, Glasser MF, Coalson TS, Ortinau CM, Rueckert D, Taber LA, Van Essen DC, Rogers CE, Smyser CD, Bayly PV.

Proc Natl Acad Sci U S A. 2018 Mar 20;115(12):3156-3161. doi: 10.1073/pnas.1715451115. Epub 2018 Mar 5.


The relationship between spatial configuration and functional connectivity of brain regions.

Bijsterbosch JD, Woolrich MW, Glasser MF, Robinson EC, Beckmann CF, Van Essen DC, Harrison SJ, Smith SM.

Elife. 2018 Feb 16;7. pii: e32992. doi: 10.7554/eLife.32992.


Neurite imaging reveals microstructural variations in human cerebral cortical gray matter.

Fukutomi H, Glasser MF, Zhang H, Autio JA, Coalson TS, Okada T, Togashi K, Van Essen DC, Hayashi T.

Neuroimage. 2018 Nov 15;182:488-499. doi: 10.1016/j.neuroimage.2018.02.017. Epub 2018 Feb 12.


Multimodal surface matching with higher-order smoothness constraints.

Robinson EC, Garcia K, Glasser MF, Chen Z, Coalson TS, Makropoulos A, Bozek J, Wright R, Schuh A, Webster M, Hutter J, Price A, Cordero Grande L, Hughes E, Tusor N, Bayly PV, Van Essen DC, Smith SM, Edwards AD, Hajnal J, Jenkinson M, Glocker B, Rueckert D.

Neuroimage. 2018 Feb 15;167:453-465. doi: 10.1016/j.neuroimage.2017.10.037. Epub 2017 Oct 31.


MHC matching improves engraftment of iPSC-derived neurons in non-human primates.

Morizane A, Kikuchi T, Hayashi T, Mizuma H, Takara S, Doi H, Mawatari A, Glasser MF, Shiina T, Ishigaki H, Itoh Y, Okita K, Yamasaki E, Doi D, Onoe H, Ogasawara K, Yamanaka S, Takahashi J.

Nat Commun. 2017 Aug 30;8(1):385. doi: 10.1038/s41467-017-00926-5.


The heritability of multi-modal connectivity in human brain activity.

Colclough GL, Smith SM, Nichols TE, Winkler AM, Sotiropoulos SN, Glasser MF, Van Essen DC, Woolrich MW.

Elife. 2017 Jul 26;6. pii: e20178. doi: 10.7554/eLife.20178.


Parcellations and Connectivity Patterns in Human and Macaque Cerebral Cortex.

Van Essen DC, Donahue C, Dierker DL, Glasser MF.

In: Kennedy H, Van Essen DC, Christen Y, editors. Micro-, Meso- and Macro-Connectomics of the Brain [Internet]. Cham (CH): Springer; 2016.
2016 Mar 11.


Hand classification of fMRI ICA noise components.

Griffanti L, Douaud G, Bijsterbosch J, Evangelisti S, Alfaro-Almagro F, Glasser MF, Duff EP, Fitzgibbon S, Westphal R, Carone D, Beckmann CF, Smith SM.

Neuroimage. 2017 Jul 1;154:188-205. doi: 10.1016/j.neuroimage.2016.12.036. Epub 2016 Dec 16.


Tradeoffs in pushing the spatial resolution of fMRI for the 7T Human Connectome Project.

T Vu A, Jamison K, Glasser MF, Smith SM, Coalson T, Moeller S, Auerbach EJ, Uğurbil K, Yacoub E.

Neuroimage. 2017 Jul 1;154:23-32. doi: 10.1016/j.neuroimage.2016.11.049. Epub 2016 Nov 25. Review.


The Human Connectome Project's neuroimaging approach.

Glasser MF, Smith SM, Marcus DS, Andersson JL, Auerbach EJ, Behrens TE, Coalson TS, Harms MP, Jenkinson M, Moeller S, Robinson EC, Sotiropoulos SN, Xu J, Yacoub E, Ugurbil K, Van Essen DC.

Nat Neurosci. 2016 Aug 26;19(9):1175-87. doi: 10.1038/nn.4361. Review.


A multi-modal parcellation of human cerebral cortex.

Glasser MF, Coalson TS, Robinson EC, Hacker CD, Harwell J, Yacoub E, Ugurbil K, Andersson J, Beckmann CF, Jenkinson M, Smith SM, Van Essen DC.

Nature. 2016 Aug 11;536(7615):171-178. doi: 10.1038/nature18933. Epub 2016 Jul 20.


Using Diffusion Tractography to Predict Cortical Connection Strength and Distance: A Quantitative Comparison with Tracers in the Monkey.

Donahue CJ, Sotiropoulos SN, Jbabdi S, Hernandez-Fernandez M, Behrens TE, Dyrby TB, Coalson T, Kennedy H, Knoblauch K, Van Essen DC, Glasser MF.

J Neurosci. 2016 Jun 22;36(25):6758-70. doi: 10.1523/JNEUROSCI.0493-16.2016.


The Brain Analysis Library of Spatial maps and Atlases (BALSA) database.

Van Essen DC, Smith J, Glasser MF, Elam J, Donahue CJ, Dierker DL, Reid EK, Coalson T, Harwell J.

Neuroimage. 2017 Jan;144(Pt B):270-274. doi: 10.1016/j.neuroimage.2016.04.002. Epub 2016 Apr 10.


Early Postnatal Myelin Content Estimate of White Matter via T1w/T2w Ratio.

Lee K, Cherel M, Budin F, Gilmore J, Consing KZ, Rasmussen J, Wadhwa PD, Entringer S, Glasser MF, Van Essen DC, Buss C, Styner M.

Proc SPIE Int Soc Opt Eng. 2015;9417. pii: 94171R. Epub 2015 Mar 17.


Canonical genetic signatures of the adult human brain.

Hawrylycz M, Miller JA, Menon V, Feng D, Dolbeare T, Guillozet-Bongaarts AL, Jegga AG, Aronow BJ, Lee CK, Bernard A, Glasser MF, Dierker DL, Menche J, Szafer A, Collman F, Grange P, Berman KA, Mihalas S, Yao Z, Stewart L, Barabási AL, Schulkin J, Phillips J, Ng L, Dang C, Haynor DR, Jones A, Van Essen DC, Koch C, Lein E.

Nat Neurosci. 2015 Dec;18(12):1832-44. doi: 10.1038/nn.4171. Epub 2015 Nov 16.


A positive-negative mode of population covariation links brain connectivity, demographics and behavior.

Smith SM, Nichols TE, Vidaurre D, Winkler AM, Behrens TE, Glasser MF, Ugurbil K, Barch DM, Van Essen DC, Miller KL.

Nat Neurosci. 2015 Nov;18(11):1565-7. doi: 10.1038/nn.4125. Epub 2015 Sep 28.


ConnectomeDB--Sharing human brain connectivity data.

Hodge MR, Horton W, Brown T, Herrick R, Olsen T, Hileman ME, McKay M, Archie KA, Cler E, Harms MP, Burgess GC, Glasser MF, Elam JS, Curtiss SW, Barch DM, Oostenveld R, Larson-Prior LJ, Ugurbil K, Van Essen DC, Marcus DS.

Neuroimage. 2016 Jan 1;124(Pt B):1102-1107. doi: 10.1016/j.neuroimage.2015.04.046. Epub 2015 Apr 29.


Large-scale probabilistic functional modes from resting state fMRI.

Harrison SJ, Woolrich MW, Robinson EC, Glasser MF, Beckmann CF, Jenkinson M, Smith SM.

Neuroimage. 2015 Apr 1;109:217-31. doi: 10.1016/j.neuroimage.2015.01.013. Epub 2015 Jan 15.


Correspondences between retinotopic areas and myelin maps in human visual cortex.

Abdollahi RO, Kolster H, Glasser MF, Robinson EC, Coalson TS, Dierker D, Jenkinson M, Van Essen DC, Orban GA.

Neuroimage. 2014 Oct 1;99:509-24. doi: 10.1016/j.neuroimage.2014.06.042. Epub 2014 Jun 24.


MSM: a new flexible framework for Multimodal Surface Matching.

Robinson EC, Jbabdi S, Glasser MF, Andersson J, Burgess GC, Harms MP, Smith SM, Van Essen DC, Jenkinson M.

Neuroimage. 2014 Oct 15;100:414-26. doi: 10.1016/j.neuroimage.2014.05.069. Epub 2014 Jun 2.


Altered global brain signal in schizophrenia.

Yang GJ, Murray JD, Repovs G, Cole MW, Savic A, Glasser MF, Pittenger C, Krystal JH, Wang XJ, Pearlson GD, Glahn DC, Anticevic A.

Proc Natl Acad Sci U S A. 2014 May 20;111(20):7438-43. doi: 10.1073/pnas.1405289111. Epub 2014 May 5.


Automatic denoising of functional MRI data: combining independent component analysis and hierarchical fusion of classifiers.

Salimi-Khorshidi G, Douaud G, Beckmann CF, Glasser MF, Griffanti L, Smith SM.

Neuroimage. 2014 Apr 15;90:449-68. doi: 10.1016/j.neuroimage.2013.11.046. Epub 2014 Jan 2.


Functional connectomics from resting-state fMRI.

Smith SM, Vidaurre D, Beckmann CF, Glasser MF, Jenkinson M, Miller KL, Nichols TE, Robinson EC, Salimi-Khorshidi G, Woolrich MW, Barch DM, Uğurbil K, Van Essen DC.

Trends Cogn Sci. 2013 Dec;17(12):666-82. doi: 10.1016/j.tics.2013.09.016. Epub 2013 Nov 12. Review.


Human Connectome Project informatics: quality control, database services, and data visualization.

Marcus DS, Harms MP, Snyder AZ, Jenkinson M, Wilson JA, Glasser MF, Barch DM, Archie KA, Burgess GC, Ramaratnam M, Hodge M, Horton W, Herrick R, Olsen T, McKay M, House M, Hileman M, Reid E, Harwell J, Coalson T, Schindler J, Elam JS, Curtiss SW, Van Essen DC; WU-Minn HCP Consortium.

Neuroimage. 2013 Oct 15;80:202-19. doi: 10.1016/j.neuroimage.2013.05.077. Epub 2013 May 24.


Advances in diffusion MRI acquisition and processing in the Human Connectome Project.

Sotiropoulos SN, Jbabdi S, Xu J, Andersson JL, Moeller S, Auerbach EJ, Glasser MF, Hernandez M, Sapiro G, Jenkinson M, Feinberg DA, Yacoub E, Lenglet C, Van Essen DC, Ugurbil K, Behrens TE; WU-Minn HCP Consortium.

Neuroimage. 2013 Oct 15;80:125-43. doi: 10.1016/j.neuroimage.2013.05.057. Epub 2013 May 20.


Pushing spatial and temporal resolution for functional and diffusion MRI in the Human Connectome Project.

Uğurbil K, Xu J, Auerbach EJ, Moeller S, Vu AT, Duarte-Carvajalino JM, Lenglet C, Wu X, Schmitter S, Van de Moortele PF, Strupp J, Sapiro G, De Martino F, Wang D, Harel N, Garwood M, Chen L, Feinberg DA, Smith SM, Miller KL, Sotiropoulos SN, Jbabdi S, Andersson JL, Behrens TE, Glasser MF, Van Essen DC, Yacoub E; WU-Minn HCP Consortium.

Neuroimage. 2013 Oct 15;80:80-104. doi: 10.1016/j.neuroimage.2013.05.012. Epub 2013 May 21.


Resting-state fMRI in the Human Connectome Project.

Smith SM, Beckmann CF, Andersson J, Auerbach EJ, Bijsterbosch J, Douaud G, Duff E, Feinberg DA, Griffanti L, Harms MP, Kelly M, Laumann T, Miller KL, Moeller S, Petersen S, Power J, Salimi-Khorshidi G, Snyder AZ, Vu AT, Woolrich MW, Xu J, Yacoub E, Uğurbil K, Van Essen DC, Glasser MF; WU-Minn HCP Consortium.

Neuroimage. 2013 Oct 15;80:144-68. doi: 10.1016/j.neuroimage.2013.05.039. Epub 2013 May 20.


Function in the human connectome: task-fMRI and individual differences in behavior.

Barch DM, Burgess GC, Harms MP, Petersen SE, Schlaggar BL, Corbetta M, Glasser MF, Curtiss S, Dixit S, Feldt C, Nolan D, Bryant E, Hartley T, Footer O, Bjork JM, Poldrack R, Smith S, Johansen-Berg H, Snyder AZ, Van Essen DC; WU-Minn HCP Consortium.

Neuroimage. 2013 Oct 15;80:169-89. doi: 10.1016/j.neuroimage.2013.05.033. Epub 2013 May 16.


The minimal preprocessing pipelines for the Human Connectome Project.

Glasser MF, Sotiropoulos SN, Wilson JA, Coalson TS, Fischl B, Andersson JL, Xu J, Jbabdi S, Webster M, Polimeni JR, Van Essen DC, Jenkinson M; WU-Minn HCP Consortium.

Neuroimage. 2013 Oct 15;80:105-24. doi: 10.1016/j.neuroimage.2013.04.127. Epub 2013 May 11.


In vivo architectonics: a cortico-centric perspective.

Van Essen DC, Glasser MF.

Neuroimage. 2014 Jun;93 Pt 2:157-64. doi: 10.1016/j.neuroimage.2013.04.095. Epub 2013 May 3. Review.


Brain aging in humans, chimpanzees (Pan troglodytes), and rhesus macaques (Macaca mulatta): magnetic resonance imaging studies of macro- and microstructural changes.

Chen X, Errangi B, Li L, Glasser MF, Westlye LT, Fjell AM, Walhovd KB, Hu X, Herndon JG, Preuss TM, Rilling JK.

Neurobiol Aging. 2013 Oct;34(10):2248-60. doi: 10.1016/j.neurobiolaging.2013.03.028. Epub 2013 Apr 24.


Mapping putative hubs in human, chimpanzee and rhesus macaque connectomes via diffusion tractography.

Li L, Hu X, Preuss TM, Glasser MF, Damen FW, Qiu Y, Rilling J.

Neuroimage. 2013 Oct 15;80:462-74. doi: 10.1016/j.neuroimage.2013.04.024. Epub 2013 Apr 17.


Trends and properties of human cerebral cortex: correlations with cortical myelin content.

Glasser MF, Goyal MS, Preuss TM, Raichle ME, Van Essen DC.

Neuroimage. 2014 Jun;93 Pt 2:165-75. doi: 10.1016/j.neuroimage.2013.03.060. Epub 2013 Apr 6. Review.


Spatially constrained hierarchical parcellation of the brain with resting-state fMRI.

Blumensath T, Jbabdi S, Glasser MF, Van Essen DC, Ugurbil K, Behrens TE, Smith SM.

Neuroimage. 2013 Aug 1;76:313-24. doi: 10.1016/j.neuroimage.2013.03.024. Epub 2013 Mar 21.

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