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Items: 1 to 50 of 372

1.

TFutils: Data structures for transcription factor bioinformatics.

Stubbs BJ, Gopaulakrishnan S, Glass K, Pochet N, Everaert C, Raby B, Carey V.

F1000Res. 2019 Feb 5;8:152. doi: 10.12688/f1000research.17976.1. eCollection 2019.

PMID:
31297189
Free PMC Article
2.

Letter re: stratification by quality is not recommended in meta-analysis.

Stone J, Gurunathan U, Glass K, Munn Z, Tugwell P, Doi SAR.

J Clin Epidemiol. 2019 Jun 7. pii: S0895-4356(19)30457-3. doi: 10.1016/j.jclinepi.2019.06.004. [Epub ahead of print] No abstract available.

PMID:
31280932
3.

Meniscus-Derived Matrix Scaffolds Promote the Integrative Repair of Meniscal Defects.

Ruprecht JC, Waanders TD, Rowland CR, Nishimuta JF, Glass KA, Stencel J, DeFrate LE, Guilak F, Weinberg JB, McNulty AL.

Sci Rep. 2019 Jun 18;9(1):8719. doi: 10.1038/s41598-019-44855-3.

4.

Clinical Outcomes of Neonatal and Pediatric Extracorporeal Life Support: A Seventeen-Year, Single Institution Experience.

Trivedi P, Glass K, Clark JB, Myers JL, Cilley RE, Ceneviva G, Wang S, Kunselman AR, Ündar A.

Artif Organs. 2019 Jun 12. doi: 10.1111/aor.13512. [Epub ahead of print]

PMID:
31188477
5.

A unified framework for bias assessment in clinical research.

Stone JC, Glass K, Clark J, Munn Z, Tugwell P, Doi SAR.

Int J Evid Based Healthc. 2019 May 10. doi: 10.1097/XEB.0000000000000165. [Epub ahead of print]

PMID:
31094882
6.

Routine and pulse vaccination for Lassa virus could reduce high levels of endemic disease: A mathematical modelling study.

Davies J, Lokuge K, Glass K.

Vaccine. 2019 Jun 6;37(26):3451-3456. doi: 10.1016/j.vaccine.2019.05.010. Epub 2019 May 11.

PMID:
31088745
7.

Modelling diverse sources of Clostridium difficile in the community: importance of animals, infants and asymptomatic carriers.

McLure A, Clements ACA, Kirk M, Glass K.

Epidemiol Infect. 2019 Jan;147:e152. doi: 10.1017/S0950268819000384.

8.

Network Medicine in the Age of Biomedical Big Data.

Sonawane AR, Weiss ST, Glass K, Sharma A.

Front Genet. 2019 Apr 11;10:294. doi: 10.3389/fgene.2019.00294. eCollection 2019. Review.

9.

Correction: Gene Regulatory Network Analysis Identifies Sex-Linked Differences in Colon Cancer Drug Metabolism.

Lopes-Ramos CM, Kuijjer ML, Ogino S, Fuchs CS, DeMeo DL, Glass K, Quackenbush J.

Cancer Res. 2019 Apr 15;79(8):2084. doi: 10.1158/0008-5472.CAN-19-0678. No abstract available.

PMID:
30987980
10.

Estimating Sample-Specific Regulatory Networks.

Kuijjer ML, Tung MG, Yuan G, Quackenbush J, Glass K.

iScience. 2019 Apr 26;14:226-240. doi: 10.1016/j.isci.2019.03.021. Epub 2019 Mar 28.

11.

Premedication with neuromuscular blockade and sedation during neonatal intubation is associated with fewer adverse events.

Ozawa Y, Ades A, Foglia EE, DeMeo S, Barry J, Sawyer T, Singh N, Glass K, Jung P, Quek BH, Johnston L, Kim J, Napolitano N, Shults J, Nadkarni VM, Nishisaki A; National Emergency Airway Registry for Neonates (NEAR4NEOS) Investigators.

J Perinatol. 2019 Jun;39(6):848-856. doi: 10.1038/s41372-019-0367-0. Epub 2019 Apr 2.

PMID:
30940929
12.

RNA-sequencing across three matched tissues reveals shared and tissue-specific gene expression and pathway signatures of COPD.

Morrow JD, Chase RP, Parker MM, Glass K, Seo M, Divo M, Owen CA, Castaldi P, DeMeo DL, Silverman EK, Hersh CP.

Respir Res. 2019 Apr 2;20(1):65. doi: 10.1186/s12931-019-1032-z.

13.

Indonesian Hajj Cohorts and Mortality in Saudi Arabia from 2004 to 2011.

Pane M, Kong FYM, Purnama TB, Glass K, Imari S, Samaan G, Oshitani H.

J Epidemiol Glob Health. 2019 Mar;9(1):11-18. doi: 10.2991/jegh.k.181231.001.

PMID:
30932384
14.

Increasing incidence of invasive nontyphoidal Salmonella infections in Queensland, Australia, 2007-2016.

Parisi A, Crump JA, Stafford R, Glass K, Howden BP, Kirk MD.

PLoS Negl Trop Dis. 2019 Mar 18;13(3):e0007187. doi: 10.1371/journal.pntd.0007187. eCollection 2019 Mar.

15.

Seasonality and community interventions in a mathematical model of Clostridium difficile transmission.

McLure A, Furuya-Kanamori L, Clements ACA, Kirk M, Glass K.

J Hosp Infect. 2019 Jun;102(2):157-164. doi: 10.1016/j.jhin.2019.03.001. Epub 2019 Mar 15.

PMID:
30880267
16.

Epigenome-wide association study reveals methylation pathways associated with childhood allergic sensitization.

Peng C, Van Meel ER, Cardenas A, Rifas-Shiman SL, Sonawane AR, Glass KR, Gold DR, Platts-Mills TA, Lin X, Oken E, Hivert MF, Baccarelli AA, De Jong NW, Felix JF, Jaddoe VW, Duijts L, Litonjua AA, DeMeo DL.

Epigenetics. 2019 May;14(5):445-466. doi: 10.1080/15592294.2019.1590085. Epub 2019 Mar 28.

PMID:
30876376
17.

Modelling the impact of biosecurity practices on the risk of high pathogenic avian influenza outbreaks in Australian commercial chicken farms.

Glass K, Barnes B, Scott A, Toribio JA, Moloney B, Singh M, Hernandez-Jover M.

Prev Vet Med. 2019 Apr 1;165:8-14. doi: 10.1016/j.prevetmed.2019.02.002. Epub 2019 Feb 5.

PMID:
30851932
18.

Effective Implementation of Culturally Appropriate Tools in Addressing Overweight and Obesity in an Urban Underserved Early Childhood Population in Pediatric Primary Care.

Herbst RB, Khalsa AS, Schlottmann H, Kerrey MK, Glass K, Burkhardt MC.

Clin Pediatr (Phila). 2019 May;58(5):511-520. doi: 10.1177/0009922819832088. Epub 2019 Mar 6.

PMID:
30841719
19.

New Statistical Methods for Constructing Robust Differential Correlation Networks to characterize the interactions among microRNAs.

Yu D, Zhang Z, Glass K, Su J, DeMeo DL, Tantisira K, Weiss ST, Qiu W.

Sci Rep. 2019 Mar 5;9(1):3499. doi: 10.1038/s41598-019-40167-8.

20.

Boot camps in neonatal-perinatal medicine fellowship programs: A national survey.

Kumar D, Vachharajani AJ, Wertheimer F, Vergales B, Glass K, Dannaway D, Winter L, Delaney H, Ganster A, Arnold J, Urban A, Johnston L, Bruno C, Gray MM, Sawyer T; Organization of Neonatal Training Program Directors Task Force on Simulation.

J Neonatal Perinatal Med. 2019;12(2):231-237. doi: 10.3233/NPM-18117.

PMID:
30829620
21.

Modelling high pathogenic avian influenza outbreaks in the commercial poultry industry.

Barnes B, Scott A, Hernandez-Jover M, Toribio JA, Moloney B, Glass K.

Theor Popul Biol. 2019 Apr;126:59-71. doi: 10.1016/j.tpb.2019.02.004. Epub 2019 Feb 27.

PMID:
30825417
22.

Learning to Identify Rare Disease Patients from Electronic Health Records.

Colbaugh R, Glass K, Rudolf C, Tremblay Volv Global Lausanne Switzerland M.

AMIA Annu Symp Proc. 2018 Dec 5;2018:340-347. eCollection 2018.

23.

Incidence, impact and indicators of difficult intubations in the neonatal intensive care unit: a report from the National Emergency Airway Registry for Neonates.

Sawyer T, Foglia EE, Ades A, Moussa A, Napolitano N, Glass K, Johnston L, Jung P, Singh N, Quek BH, Barry J, Zenge J, DeMeo SD, Brei B, Krick J, Kim JH, Nadkarni V, Nishisaki A; National Emergency Airway Registry for Neonates (NEAR4NEOS) investigators.

Arch Dis Child Fetal Neonatal Ed. 2019 Feb 22. pii: fetalneonatal-2018-316336. doi: 10.1136/archdischild-2018-316336. [Epub ahead of print]

PMID:
30796059
24.

Correction: Assessing the probability of introduction and spread of avian influenza (AI) virus in commercial Australian poultry operations using an expert opinion elicitation.

Singh M, Toribio JA, Scott AB, Groves P, Barnes B, Glass K, Moloney B, Black A, Hernandez-Jover M.

PLoS One. 2019 Feb 21;14(2):e0212895. doi: 10.1371/journal.pone.0212895. eCollection 2019.

25.

Photoreactions of the Histidine Kinase Rhodopsin Ot-HKR from the Marine Picoalga Ostreococcus tauri.

Luck M, Velázquez Escobar F, Glass K, Sabotke MI, Hagedorn R, Corellou F, Siebert F, Hildebrandt P, Hegemann P.

Biochemistry. 2019 Apr 9;58(14):1878-1891. doi: 10.1021/acs.biochem.8b01200. Epub 2019 Mar 21.

PMID:
30768260
26.

Trends of viral gastroenteritis in the Australian Capital Territory.

Ford L, McEwen S, Glass K.

Commun Dis Intell (2018). 2018;42. pii: S2209-6051(18)00010-6. Epub 2018 Nov 16.

27.

GEOFIL: A spatially-explicit agent-based modelling framework for predicting the long-term transmission dynamics of lymphatic filariasis in American Samoa.

Xu Z, Graves PM, Lau CL, Clements A, Geard N, Glass K.

Epidemics. 2019 Jun;27:19-27. doi: 10.1016/j.epidem.2018.12.003. Epub 2018 Dec 29.

28.

Investigating locally relevant risk factors for Campylobacter infection in Australia: protocol for a case-control study and genomic analysis.

Varrone L, Stafford RJ, Lilly K, Selvey L, Glass K, Ford L, Bulach D, Kirk MD; CampySource Project Team.

BMJ Open. 2018 Dec 22;8(12):e026630. doi: 10.1136/bmjopen-2018-026630.

29.

Neonatal Intubation Practice and Outcomes: An International Registry Study.

Foglia EE, Ades A, Sawyer T, Glass KM, Singh N, Jung P, Quek BH, Johnston LC, Barry J, Zenge J, Moussa A, Kim JH, DeMeo SD, Napolitano N, Nadkarni V, Nishisaki A; NEAR4NEOS Investigators.

Pediatrics. 2019 Jan;143(1). pii: e20180902. doi: 10.1542/peds.2018-0902. Epub 2018 Dec 11.

PMID:
30538147
30.

Student-directed interactive animation for learning cytochrome P450-mediated drug metabolism.

Doyle J, Glass KC, Racz M, Teng J.

Curr Pharm Teach Learn. 2018 Dec;10(12):1565-1573. doi: 10.1016/j.cptl.2018.08.021. Epub 2018 Oct 1.

PMID:
30527821
31.

Disulfide bridge formation influences ligand recognition by the ATAD2 bromodomain.

Gay JC, Eckenroth BE, Evans CM, Langini C, Carlson S, Lloyd JT, Caflisch A, Glass KC.

Proteins. 2019 Feb;87(2):157-167. doi: 10.1002/prot.25636. Epub 2018 Dec 27.

PMID:
30520161
32.

Stratification by quality induced selection bias in a meta-analysis of clinical trials.

Stone J, Gurunathan U, Glass K, Munn Z, Tugwell P, Doi SAR.

J Clin Epidemiol. 2019 Mar;107:51-59. doi: 10.1016/j.jclinepi.2018.11.015. Epub 2018 Nov 17.

PMID:
30458262
33.

Early Identification of Patentable Medical Innovations.

Colbaugh R, Glass K.

Conf Proc IEEE Eng Med Biol Soc. 2018 Jul;2018:4924-4926. doi: 10.1109/EMBC.2018.8513226.

PMID:
30441447
34.

Robust Ensemble Learning to Identify Rare Disease Patients from Electronic Health Records.

Colbaugh R, Glass K, Rudolf C, Tremblay M.

Conf Proc IEEE Eng Med Biol Soc. 2018 Jul;2018:4085-4088. doi: 10.1109/EMBC.2018.8513241.

PMID:
30441254
35.

Geostatistical mapping of the seasonal spread of under-reported dengue cases in Bangladesh.

Sharmin S, Glass K, Viennet E, Harley D.

PLoS Negl Trop Dis. 2018 Nov 15;12(11):e0006947. doi: 10.1371/journal.pntd.0006947. eCollection 2018 Nov.

36.

A Network Analysis of Biomarkers for Type 2 Diabetes.

Huang T, Glass K, Zeleznik OA, Kang JH, Ivey KL, Sonawane AR, Birmann BM, Hersh CP, Hu FB, Tworoger SS.

Diabetes. 2019 Feb;68(2):281-290. doi: 10.2337/db18-0892. Epub 2018 Nov 8.

PMID:
30409783
37.

Gene Regulatory Network Analysis Identifies Sex-Linked Differences in Colon Cancer Drug Metabolism.

Lopes-Ramos CM, Kuijjer ML, Ogino S, Fuchs CS, DeMeo DL, Glass K, Quackenbush J.

Cancer Res. 2018 Oct 1;78(19):5538-5547. doi: 10.1158/0008-5472.CAN-18-0454. Erratum in: Cancer Res. 2019 Apr 15;79(8):2084.

PMID:
30275053
38.

Integrative epigenomic analysis in differentiated human primary bronchial epithelial cells exposed to cigarette smoke.

Glass K, Thibault D, Guo F, Mitchel JA, Pham B, Qiu W, Li Y, Jiang Z, Castaldi PJ, Silverman EK, Raby B, Park JA, Yuan GC, Zhou X.

Sci Rep. 2018 Aug 24;8(1):12750. doi: 10.1038/s41598-018-30781-3.

39.

Salmonella source attribution in a subtropical state of Australia: capturing environmental reservoirs of infection.

Fearnley EJ, Lal A, Bates J, Stafford R, Kirk MD, Glass K.

Epidemiol Infect. 2018 Nov;146(15):1903-1908. doi: 10.1017/S0950268818002224. Epub 2018 Aug 14.

40.

Neonatal Intubation Competency Assessment Tool: Development and Validation.

Johnston L, Sawyer T, Nishisaki A, Whitfill T, Ades A, French H, Glass K, Dadiz R, Bruno C, Levit O, Gangadharan S, Scherzer D, Moussa A, Auerbach M; INSPIRE Research Network.

Acad Pediatr. 2019 Mar;19(2):157-164. doi: 10.1016/j.acap.2018.07.008. Epub 2018 Aug 11.

PMID:
30103050
41.

Premature Clinical Trial Discontinuation in the Era of Immune Checkpoint Inhibitors.

Khunger M, Rakshit S, Hernandez AV, Pasupuleti V, Glass K, Galsky MD, Grivas P.

Oncologist. 2018 Dec;23(12):1494-1499. doi: 10.1634/theoncologist.2018-0003. Epub 2018 Aug 1.

PMID:
30068783
42.

Regulation of decellularized tissue remodeling via scaffold-mediated lentiviral delivery in anatomically-shaped osteochondral constructs.

Rowland CR, Glass KA, Ettyreddy AR, Gloss CC, Matthews JRL, Huynh NPT, Guilak F.

Biomaterials. 2018 Sep;177:161-175. doi: 10.1016/j.biomaterials.2018.04.049. Epub 2018 May 30.

PMID:
29894913
43.

Influence of caudal epidural analgesia on cortisol concentrations and pain-related behavioral responses in mares during and after ovariectomy via colpotomy.

Rowland AL, Glass KG, Grady ST, Cummings KJ, Hinrichs K, Watts AE.

Vet Surg. 2018 Jul;47(5):715-721. doi: 10.1111/vsu.12908. Epub 2018 May 18.

PMID:
29774961
44.

Low Pathogenic Avian Influenza Exposure Risk Assessment in Australian Commercial Chicken Farms.

Scott AB, Toribio JA, Singh M, Groves P, Barnes B, Glass K, Moloney B, Black A, Hernandez-Jover M.

Front Vet Sci. 2018 Apr 26;5:68. doi: 10.3389/fvets.2018.00068. eCollection 2018.

45.

Low- and High-Pathogenic Avian Influenza H5 and H7 Spread Risk Assessment Within and Between Australian Commercial Chicken Farms.

Scott AB, Toribio JLML, Singh M, Groves P, Barnes B, Glass K, Moloney B, Black A, Hernandez-Jover M.

Front Vet Sci. 2018 Apr 9;5:63. doi: 10.3389/fvets.2018.00063. eCollection 2018.

46.

Biosecurity practices on Australian commercial layer and meat chicken farms: Performance and perceptions of farmers.

Scott AB, Singh M, Groves P, Hernandez-Jover M, Barnes B, Glass K, Moloney B, Black A, Toribio JA.

PLoS One. 2018 Apr 18;13(4):e0195582. doi: 10.1371/journal.pone.0195582. eCollection 2018.

47.

Seven Salmonella Typhimurium Outbreaks in Australia Linked by Trace-Back and Whole Genome Sequencing.

Ford L, Wang Q, Stafford R, Ressler KA, Norton S, Shadbolt C, Hope K, Franklin N, Krsteski R, Carswell A, Carter GP, Seemann T, Howard P, Valcanis M, Castillo CFS, Bates J, Glass K, Williamson DA, Sintchenko V, Howden BP, Kirk MD.

Foodborne Pathog Dis. 2018 May;15(5):285-292. doi: 10.1089/fpd.2017.2353. Epub 2018 Mar 20.

PMID:
29638170
48.

Health Outcomes from Multidrug-Resistant Salmonella Infections in High-Income Countries: A Systematic Review and Meta-Analysis.

Parisi A, Crump JA, Glass K, Howden BP, Furuya-Kanamori L, Vilkins S, Gray DJ, Kirk MD.

Foodborne Pathog Dis. 2018 Jul;15(7):428-436. doi: 10.1089/fpd.2017.2403. Epub 2018 Apr 6.

PMID:
29624414
49.

Modelling low pathogenic avian influenza introduction into the commercial poultry industry.

Barnes B, Glass K.

Math Biosci. 2018 Jun;300:115-121. doi: 10.1016/j.mbs.2018.03.021. Epub 2018 Mar 23.

PMID:
29580852
50.

Sediment exchange to mitigate pollutant exposure in urban soil.

Walsh D, Glass K, Morris S, Zhang H, McRae I, Anderson N, Alfieri A, Egendorf SP, Holberton S, Owrang S, Cheng Z.

J Environ Manage. 2018 May 15;214:354-361. doi: 10.1016/j.jenvman.2018.03.013. Epub 2018 Mar 11.

PMID:
29533833

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