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Items: 29

1.

A toolset of constitutive promoters for metabolic engineering of Rhodosporidium toruloides.

Nora LC, Wehrs M, Kim J, Cheng JF, Tarver A, Simmons BA, Magnuson J, Harmon-Smith M, Silva-Rocha R, Gladden JM, Mukhopadhyay A, Skerker JM, Kirby J.

Microb Cell Fact. 2019 Jun 29;18(1):117. doi: 10.1186/s12934-019-1167-0.

2.

Conversion of depolymerized sugars and aromatics from engineered feedstocks by two oleaginous red yeasts.

Rodriguez A, Ersig N, Geiselman GM, Seibel K, Simmons BA, Magnuson JK, Eudes A, Gladden JM.

Bioresour Technol. 2019 Aug;286:121365. doi: 10.1016/j.biortech.2019.121365. Epub 2019 Apr 22.

PMID:
31030073
3.

Guanidine Riboswitch-Regulated Efflux Transporters Protect Bacteria against Ionic Liquid Toxicity.

Higgins DA, Gladden JM, Kimbrel JA, Simmons BA, Singer SW, Thelen MP.

J Bacteriol. 2019 Jun 10;201(13). pii: e00069-19. doi: 10.1128/JB.00069-19. Print 2019 Jul 1.

4.

Multiplexed CRISPR-Cas9-Based Genome Editing of Rhodosporidium toruloides.

Otoupal PB, Ito M, Arkin AP, Magnuson JK, Gladden JM, Skerker JM.

mSphere. 2019 Mar 20;4(2). pii: e00099-19. doi: 10.1128/mSphere.00099-19.

5.

Monoterpene production by the carotenogenic yeast Rhodosporidium toruloides.

Zhuang X, Kilian O, Monroe E, Ito M, Tran-Gymfi MB, Liu F, Davis RW, Mirsiaghi M, Sundstrom E, Pray T, Skerker JM, George A, Gladden JM.

Microb Cell Fact. 2019 Mar 18;18(1):54. doi: 10.1186/s12934-019-1099-8.

6.

A new approach to Cas9-based genome editing in Aspergillus niger that is precise, efficient and selectable.

Leynaud-Kieffer LMC, Curran SC, Kim I, Magnuson JK, Gladden JM, Baker SE, Simmons BA.

PLoS One. 2019 Jan 17;14(1):e0210243. doi: 10.1371/journal.pone.0210243. eCollection 2019.

7.

Short-chain ketone production by engineered polyketide synthases in Streptomyces albus.

Yuzawa S, Mirsiaghi M, Jocic R, Fujii T, Masson F, Benites VT, Baidoo EEK, Sundstrom E, Tanjore D, Pray TR, George A, Davis RW, Gladden JM, Simmons BA, Katz L, Keasling JD.

Nat Commun. 2018 Nov 1;9(1):4569. doi: 10.1038/s41467-018-07040-0.

8.

Correction to: Cloning and Expression of Heterologous Cellulases and Enzymes in Aspergillus niger.

Reilly MC, Amaike Campen S, Simmons BA, Baker SE, Gladden JM, Magnuson JK.

Methods Mol Biol. 2018;1796:E1. doi: 10.1007/978-1-4939-7877-9_22.

PMID:
30374680
9.

Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri.

Vesth TC, Nybo JL, Theobald S, Frisvad JC, Larsen TO, Nielsen KF, Hoof JB, Brandl J, Salamov A, Riley R, Gladden JM, Phatale P, Nielsen MT, Lyhne EK, Kogle ME, Strasser K, McDonnell E, Barry K, Clum A, Chen C, LaButti K, Haridas S, Nolan M, Sandor L, Kuo A, Lipzen A, Hainaut M, Drula E, Tsang A, Magnuson JK, Henrissat B, Wiebenga A, Simmons BA, Mäkelä MR, de Vries RP, Grigoriev IV, Mortensen UH, Baker SE, Andersen MR.

Nat Genet. 2018 Dec;50(12):1688-1695. doi: 10.1038/s41588-018-0246-1. Epub 2018 Oct 22.

PMID:
30349117
10.

Cloning and Expression of Heterologous Cellulases and Enzymes in Aspergillus niger.

Reilly MC, Amaike Campen S, Simmons BA, Baker SE, Gladden JM, Magnuson JK.

Methods Mol Biol. 2018;1796:123-133. doi: 10.1007/978-1-4939-7877-9_10. Erratum in: Methods Mol Biol. 2018;1796:E1.

PMID:
29856051
11.

Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides.

Coradetti ST, Pinel D, Geiselman GM, Ito M, Mondo SJ, Reilly MC, Cheng YF, Bauer S, Grigoriev IV, Gladden JM, Simmons BA, Brem RB, Arkin AP, Skerker JM.

Elife. 2018 Mar 9;7. pii: e32110. doi: 10.7554/eLife.32110.

12.

Forward genetics screen coupled with whole-genome resequencing identifies novel gene targets for improving heterologous enzyme production in Aspergillus niger.

Reilly MC, Kim J, Lynn J, Simmons BA, Gladden JM, Magnuson JK, Baker SE.

Appl Microbiol Biotechnol. 2018 Feb;102(4):1797-1807. doi: 10.1007/s00253-017-8717-3. Epub 2018 Jan 6.

13.

Expression of naturally ionic liquid-tolerant thermophilic cellulases in Aspergillus niger.

Amaike Campen S, Lynn J, Sibert SJ, Srikrishnan S, Phatale P, Feldman T, Guenther JM, Hiras J, Tran YTA, Singer SW, Adams PD, Sale KL, Simmons BA, Baker SE, Magnuson JK, Gladden JM.

PLoS One. 2017 Dec 27;12(12):e0189604. doi: 10.1371/journal.pone.0189604. eCollection 2017.

14.

A bacterial pioneer produces cellulase complexes that persist through community succession.

Kolinko S, Wu YW, Tachea F, Denzel E, Hiras J, Gabriel R, Bäcker N, Chan LJG, Eichorst SA, Frey D, Chen Q, Azadi P, Adams PD, Pray TR, Tanjore D, Petzold CJ, Gladden JM, Simmons BA, Singer SW.

Nat Microbiol. 2018 Jan;3(1):99-107. doi: 10.1038/s41564-017-0052-z. Epub 2017 Nov 6.

15.

Rhodosporidium toruloides: a new platform organism for conversion of lignocellulose into terpene biofuels and bioproducts.

Yaegashi J, Kirby J, Ito M, Sun J, Dutta T, Mirsiaghi M, Sundstrom ER, Rodriguez A, Baidoo E, Tanjore D, Pray T, Sale K, Singh S, Keasling JD, Simmons BA, Singer SW, Magnuson JK, Arkin AP, Skerker JM, Gladden JM.

Biotechnol Biofuels. 2017 Oct 23;10:241. doi: 10.1186/s13068-017-0927-5. eCollection 2017.

16.

Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels.

Wu W, Davis RW, Tran-Gyamfi MB, Kuo A, LaButti K, Mihaltcheva S, Hundley H, Chovatia M, Lindquist E, Barry K, Grigoriev IV, Henrissat B, Gladden JM.

Appl Microbiol Biotechnol. 2017 Mar;101(6):2603-2618. doi: 10.1007/s00253-017-8091-1. Epub 2017 Jan 12.

PMID:
28078400
17.

Rapid Discovery and Functional Characterization of Terpene Synthases from Four Endophytic Xylariaceae.

Wu W, Tran W, Taatjes CA, Alonso-Gutierrez J, Lee TS, Gladden JM.

PLoS One. 2016 Feb 17;11(2):e0146983. doi: 10.1371/journal.pone.0146983. eCollection 2016.

18.

Phylogenomically guided identification of industrially relevant GH1 β-glucosidases through DNA synthesis and nanostructure-initiator mass spectrometry.

Heins RA, Cheng X, Nath S, Deng K, Bowen BP, Chivian DC, Datta S, Friedland GD, D'Haeseleer P, Wu D, Tran-Gyamfi M, Scullin CS, Singh S, Shi W, Hamilton MG, Bendall ML, Sczyrba A, Thompson J, Feldman T, Guenther JM, Gladden JM, Cheng JF, Adams PD, Rubin EM, Simmons BA, Sale KL, Northen TR, Deutsch S.

ACS Chem Biol. 2014 Sep 19;9(9):2082-91. doi: 10.1021/cb500244v. Epub 2014 Jul 17.

19.

Discovery and characterization of ionic liquid-tolerant thermophilic cellulases from a switchgrass-adapted microbial community.

Gladden JM, Park JI, Bergmann J, Reyes-Ortiz V, D'haeseleer P, Quirino BF, Sale KL, Simmons BA, Singer SW.

Biotechnol Biofuels. 2014 Jan 29;7(1):15. doi: 10.1186/1754-6834-7-15.

20.

Discovery of two novel β-glucosidases from an Amazon soil metagenomic library.

Bergmann JC, Costa OY, Gladden JM, Singer S, Heins R, D'haeseleer P, Simmons BA, Quirino BF.

FEMS Microbiol Lett. 2014 Feb;351(2):147-55. doi: 10.1111/1574-6968.12332. Epub 2013 Dec 16.

21.

Proteogenomic analysis of a thermophilic bacterial consortium adapted to deconstruct switchgrass.

D'haeseleer P, Gladden JM, Allgaier M, Chain PS, Tringe SG, Malfatti SA, Aldrich JT, Nicora CD, Robinson EW, Paša-Tolić L, Hugenholtz P, Simmons BA, Singer SW.

PLoS One. 2013 Jul 19;8(7):e68465. doi: 10.1371/journal.pone.0068465. Print 2013.

22.

Molecular antagonism between X-chromosome and autosome signals determines nematode sex.

Farboud B, Nix P, Jow MM, Gladden JM, Meyer BJ.

Genes Dev. 2013 May 15;27(10):1159-78. doi: 10.1101/gad.217026.113. Epub 2013 May 10.

23.

A thermophilic ionic liquid-tolerant cellulase cocktail for the production of cellulosic biofuels.

Park JI, Steen EJ, Burd H, Evans SS, Redding-Johnson AM, Batth T, Benke PI, D'haeseleer P, Sun N, Sale KL, Keasling JD, Lee TS, Petzold CJ, Mukhopadhyay A, Singer SW, Simmons BA, Gladden JM.

PLoS One. 2012;7(5):e37010. doi: 10.1371/journal.pone.0037010. Epub 2012 May 23.

24.

Substrate perturbation alters the glycoside hydrolase activities and community composition of switchgrass-adapted bacterial consortia.

Gladden JM, Eichorst SA, Hazen TC, Simmons BA, Singer SW.

Biotechnol Bioeng. 2012 May;109(5):1140-5. doi: 10.1002/bit.24388. Epub 2011 Dec 12.

PMID:
22125273
25.

Glycoside hydrolase activities of thermophilic bacterial consortia adapted to switchgrass.

Gladden JM, Allgaier M, Miller CS, Hazen TC, VanderGheynst JS, Hugenholtz P, Simmons BA, Singer SW.

Appl Environ Microbiol. 2011 Aug 15;77(16):5804-12. doi: 10.1128/AEM.00032-11. Epub 2011 Jul 1.

26.

Enrichment, isolation and characterization of fungi tolerant to 1-ethyl-3-methylimidazolium acetate.

Singer SW, Reddy AP, Gladden JM, Guo H, Hazen TC, Simmons BA, VanderGheynst JS.

J Appl Microbiol. 2011 Apr;110(4):1023-31. doi: 10.1111/j.1365-2672.2011.04959.x. Epub 2011 Feb 21.

27.

A condensin-like dosage compensation complex acts at a distance to control expression throughout the genome.

Jans J, Gladden JM, Ralston EJ, Pickle CS, Michel AH, Pferdehirt RR, Eisen MB, Meyer BJ.

Genes Dev. 2009 Mar 1;23(5):602-18. doi: 10.1101/gad.1751109.

28.

Revisiting the X:A signal that specifies Caenorhabditis elegans sexual fate.

Gladden JM, Farboud B, Meyer BJ.

Genetics. 2007 Nov;177(3):1639-54. Epub 2007 Oct 18.

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