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Items: 10

1.

Genomic analysis of respiratory syncytial virus infections in households and utility in inferring who infects the infant.

Agoti CN, Phan MVT, Munywoki PK, Githinji G, Medley GF, Cane PA, Kellam P, Cotten M, Nokes DJ.

Sci Rep. 2019 Jul 11;9(1):10076. doi: 10.1038/s41598-019-46509-w.

2.

Scalable Workflows and Reproducible Data Analysis for Genomics.

Strozzi F, Janssen R, Wurmus R, Crusoe MR, Githinji G, Di Tommaso P, Belhachemi D, Möller S, Smant G, de Ligt J, Prins P.

Methods Mol Biol. 2019;1910:723-745. doi: 10.1007/978-1-4939-9074-0_24.

PMID:
31278683
3.

Evaluating the performance of tools used to call minority variants from whole genome short-read data.

Said Mohammed K, Kibinge N, Prins P, Agoti CN, Cotten M, Nokes DJ, Brand S, Githinji G.

Version 2. Wellcome Open Res. 2018 Sep 13 [revised 2018 Jan 1];3:21. doi: 10.12688/wellcomeopenres.13538.2. eCollection 2018.

4.

Potassium iodate levels in processed edible salts available in retail shops throughout Kenya, 2013.

Githinji GG, Njine N, Njihia J, Mwihia J, Ransom J.

Public Health Nutr. 2018 Sep;21(13):2482-2484. doi: 10.1017/S1368980018000915. Epub 2018 Apr 19.

PMID:
29669614
5.

A re-assessment of gene-tag classification approaches for describing var gene expression patterns during human Plasmodium falciparum malaria parasite infections.

Githinji G, Bull PC.

Wellcome Open Res. 2017 Sep 19;2:86. doi: 10.12688/wellcomeopenres.12053.1. eCollection 2017.

6.

A27 Using whole genome sequence data and minority variant profiles to elucidate transmission patterns during RSV household outbreaks.

Githinji G, Agoti C, Munywoki P, Bett A, Kellam P, Cotton M, Nokes DJ.

Virus Evol. 2017 Mar 5;3(Suppl 1). pii: vew036.026. doi: 10.1093/ve/vew036.026. eCollection 2017 Mar. No abstract available.

7.

A26 Transmission patterns and evolution of RSV in a community outbreak identified by genomic analysis.

Agoti CN, Munywoki PK, Phan MVT, Otieno JR, Kamau E, Bett A, Kombe I, Githinji G, Medley GF, Cane PA, Kellam P, Cotton M, Nokes DJ.

Virus Evol. 2017 Mar 5;3(Suppl 1). pii: vew036.025. doi: 10.1093/ve/vew036.025. eCollection 2017 Mar. No abstract available.

8.

Transmission patterns and evolution of respiratory syncytial virus in a community outbreak identified by genomic analysis.

Agoti CN, Munywoki PK, Phan MVT, Otieno JR, Kamau E, Bett A, Kombe I, Githinji G, Medley GF, Cane PA, Kellam P, Cotten M, Nokes DJ.

Virus Evol. 2017 Mar 11;3(1):vex006. doi: 10.1093/ve/vex006. eCollection 2017 Jan.

9.

Prognostic indicators of life-threatening malaria are associated with distinct parasite variant antigen profiles.

Warimwe GM, Fegan G, Musyoki JN, Newton CR, Opiyo M, Githinji G, Andisi C, Menza F, Kitsao B, Marsh K, Bull PC.

Sci Transl Med. 2012 Apr 11;4(129):129ra45. doi: 10.1126/scitranslmed.3003247.

10.

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.

Bonnal RJ, Aerts J, Githinji G, Goto N, MacLean D, Miller CA, Mishima H, Pagani M, Ramirez-Gonzalez R, Smant G, Strozzi F, Syme R, Vos R, Wennblom TJ, Woodcroft BJ, Katayama T, Prins P.

Bioinformatics. 2012 Apr 1;28(7):1035-7. doi: 10.1093/bioinformatics/bts080. Epub 2012 Feb 12.

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