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Items: 17

1.

Transcriptional Silencers in Drosophila Serve a Dual Role as Transcriptional Enhancers in Alternate Cellular Contexts.

Gisselbrecht SS, Palagi A, Kurland JV, Rogers JM, Ozadam H, Zhan Y, Dekker J, Bulyk ML.

Mol Cell. 2019 Oct 22. pii: S1097-2765(19)30764-6. doi: 10.1016/j.molcel.2019.10.004. [Epub ahead of print]

PMID:
31704182
2.

A Comprehensive Drosophila melanogaster Transcription Factor Interactome.

Shokri L, Inukai S, Hafner A, Weinand K, Hens K, Vedenko A, Gisselbrecht SS, Dainese R, Bischof J, Furger E, Feuz JD, Basler K, Deplancke B, Bulyk ML.

Cell Rep. 2019 Apr 16;27(3):955-970.e7. doi: 10.1016/j.celrep.2019.03.071.

3.

Survey of variation in human transcription factors reveals prevalent DNA binding changes.

Barrera LA, Vedenko A, Kurland JV, Rogers JM, Gisselbrecht SS, Rossin EJ, Woodard J, Mariani L, Kock KH, Inukai S, Siggers T, Shokri L, Gordân R, Sahni N, Cotsapas C, Hao T, Yi S, Kellis M, Daly MJ, Vidal M, Hill DE, Bulyk ML.

Science. 2016 Mar 25;351(6280):1450-1454. doi: 10.1126/science.aad2257. Epub 2016 Mar 24.

4.

Two Forkhead transcription factors regulate cardiac progenitor specification by controlling the expression of receptors of the fibroblast growth factor and Wnt signaling pathways.

Ahmad SM, Bhattacharyya P, Jeffries N, Gisselbrecht SS, Michelson AM.

Development. 2016 Jan 15;143(2):306-17. doi: 10.1242/dev.122952. Epub 2015 Dec 10.

5.

UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions.

Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML.

Nucleic Acids Res. 2015 Jan;43(Database issue):D117-22. doi: 10.1093/nar/gku1045. Epub 2014 Nov 5.

6.

Contribution of distinct homeodomain DNA binding specificities to Drosophila embryonic mesodermal cell-specific gene expression programs.

Busser BW, Gisselbrecht SS, Shokri L, Tansey TR, Gamble CE, Bulyk ML, Michelson AM.

PLoS One. 2013 Jul 26;8(7):e69385. doi: 10.1371/journal.pone.0069385. Print 2013.

7.

Highly parallel assays of tissue-specific enhancers in whole Drosophila embryos.

Gisselbrecht SS, Barrera LA, Porsch M, Aboukhalil A, Estep PW 3rd, Vedenko A, Palagi A, Kim Y, Zhu X, Busser BW, Gamble CE, Iagovitina A, Singhania A, Michelson AM, Bulyk ML.

Nat Methods. 2013 Aug;10(8):774-80. doi: 10.1038/nmeth.2558. Epub 2013 Jul 14.

8.

DNA-binding specificity changes in the evolution of forkhead transcription factors.

Nakagawa S, Gisselbrecht SS, Rogers JM, Hartl DL, Bulyk ML.

Proc Natl Acad Sci U S A. 2013 Jul 23;110(30):12349-54. doi: 10.1073/pnas.1310430110. Epub 2013 Jul 8.

9.

Integrative analysis of the zinc finger transcription factor Lame duck in the Drosophila myogenic gene regulatory network.

Busser BW, Huang D, Rogacki KR, Lane EA, Shokri L, Ni T, Gamble CE, Gisselbrecht SS, Zhu J, Bulyk ML, Ovcharenko I, Michelson AM.

Proc Natl Acad Sci U S A. 2012 Dec 11;109(50):20768-73. doi: 10.1073/pnas.1210415109. Epub 2012 Nov 26.

10.

Two forkhead transcription factors regulate the division of cardiac progenitor cells by a Polo-dependent pathway.

Ahmad SM, Tansey TR, Busser BW, Nolte MT, Jeffries N, Gisselbrecht SS, Rusan NM, Michelson AM.

Dev Cell. 2012 Jul 17;23(1):97-111. doi: 10.1016/j.devcel.2012.05.011.

11.

Molecular mechanism underlying the regulatory specificity of a Drosophila homeodomain protein that specifies myoblast identity.

Busser BW, Shokri L, Jaeger SA, Gisselbrecht SS, Singhania A, Berger MF, Zhou B, Bulyk ML, Michelson AM.

Development. 2012 Mar;139(6):1164-74. doi: 10.1242/dev.077362. Epub 2012 Feb 1.

12.

Deficiency of the cytoskeletal protein SPECC1L leads to oblique facial clefting.

Saadi I, Alkuraya FS, Gisselbrecht SS, Goessling W, Cavallesco R, Turbe-Doan A, Petrin AL, Harris J, Siddiqui U, Grix AW Jr, Hove HD, Leboulch P, Glover TW, Morton CC, Richieri-Costa A, Murray JC, Erickson RP, Maas RL.

Am J Hum Genet. 2011 Jul 15;89(1):44-55. doi: 10.1016/j.ajhg.2011.05.023. Epub 2011 Jun 23.

13.

Using a structural and logics systems approach to infer bHLH-DNA binding specificity determinants.

De Masi F, Grove CA, Vedenko A, Alibés A, Gisselbrecht SS, Serrano L, Bulyk ML, Walhout AJ.

Nucleic Acids Res. 2011 Jun;39(11):4553-63. doi: 10.1093/nar/gkr070. Epub 2011 Feb 18.

14.
15.

The MARVEL domain protein, Singles Bar, is required for progression past the pre-fusion complex stage of myoblast fusion.

Estrada B, Maeland AD, Gisselbrecht SS, Bloor JW, Brown NH, Michelson AM.

Dev Biol. 2007 Jul 15;307(2):328-39. Epub 2007 May 3.

16.

Expression-guided in silico evaluation of candidate cis regulatory codes for Drosophila muscle founder cells.

Philippakis AA, Busser BW, Gisselbrecht SS, He FS, Estrada B, Michelson AM, Bulyk ML.

PLoS Comput Biol. 2006 May;2(5):e53. Epub 2006 May 26.

17.

An integrated strategy for analyzing the unique developmental programs of different myoblast subtypes.

Estrada B, Choe SE, Gisselbrecht SS, Michaud S, Raj L, Busser BW, Halfon MS, Church GM, Michelson AM.

PLoS Genet. 2006 Feb;2(2):e16. Epub 2006 Feb 17.

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