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Items: 50

1.

Inferring models of opinion dynamics from aggregated jury data.

Burghardt K, Rand W, Girvan M.

PLoS One. 2019 Jul 1;14(7):e0218312. doi: 10.1371/journal.pone.0218312. eCollection 2019.

2.

Complexity reduction ansatz for systems of interacting orientable agents: Beyond the Kuramoto model.

Chandra S, Girvan M, Ott E.

Chaos. 2019 May;29(5):053107. doi: 10.1063/1.5093038.

PMID:
31154774
3.

Single-cell systems biology: probing the basic unit of information flow.

Patange S, Girvan M, Larson DR.

Curr Opin Syst Biol. 2018 Apr;8:7-15. doi: 10.1016/j.coisb.2017.11.011. Epub 2017 Dec 6.

4.

Model-Free Prediction of Large Spatiotemporally Chaotic Systems from Data: A Reservoir Computing Approach.

Pathak J, Hunt B, Girvan M, Lu Z, Ott E.

Phys Rev Lett. 2018 Jan 12;120(2):024102. doi: 10.1103/PhysRevLett.120.024102.

PMID:
29376715
5.

Using machine learning to replicate chaotic attractors and calculate Lyapunov exponents from data.

Pathak J, Lu Z, Hunt BR, Girvan M, Ott E.

Chaos. 2017 Dec;27(12):121102. doi: 10.1063/1.5010300.

PMID:
29289043
6.

Reservoir observers: Model-free inference of unmeasured variables in chaotic systems.

Lu Z, Pathak J, Hunt B, Girvan M, Brockett R, Ott E.

Chaos. 2017 Apr;27(4):041102. doi: 10.1063/1.4979665.

PMID:
28456169
7.

Modeling the network dynamics of pulse-coupled neurons.

Chandra S, Hathcock D, Crain K, Antonsen TM, Girvan M, Ott E.

Chaos. 2017 Mar;27(3):033102. doi: 10.1063/1.4977514.

PMID:
28364765
8.

The myopia of crowds: Cognitive load and collective evaluation of answers on Stack Exchange.

Burghardt K, Alsina EF, Girvan M, Rand W, Lerman K.

PLoS One. 2017 Mar 16;12(3):e0173610. doi: 10.1371/journal.pone.0173610. eCollection 2017.

9.

Inhibitory neurons promote robust critical firing dynamics in networks of integrate-and-fire neurons.

Lu Z, Squires S, Ott E, Girvan M.

Phys Rev E. 2016 Dec;94(6-1):062309. doi: 10.1103/PhysRevE.94.062309. Epub 2016 Dec 19.

PMID:
28085342
10.

A pathway-centric view of spatial proximity in the 3D nucleome across cell lines.

Karathia H, Kingsford C, Girvan M, Hannenhalli S.

Sci Rep. 2016 Dec 15;6:39279. doi: 10.1038/srep39279.

11.

Resynchronization of circadian oscillators and the east-west asymmetry of jet-lag.

Lu Z, Klein-Cardeña K, Lee S, Antonsen TM, Girvan M, Ott E.

Chaos. 2016 Sep;26(9):094811.

PMID:
27781473
12.

Competing opinions and stubborness: Connecting models to data.

Burghardt K, Rand W, Girvan M.

Phys Rev E. 2016 Mar;93(3):032305. doi: 10.1103/PhysRevE.93.032305. Epub 2016 Mar 3.

PMID:
27078364
13.

Dynamical transitions in large systems of mean field-coupled Landau-Stuart oscillators: Extensive chaos and cluster states.

Ku WL, Girvan M, Ott E.

Chaos. 2015 Dec;25(12):123122. doi: 10.1063/1.4938534.

PMID:
26723161
14.

Finding New Order in Biological Functions from the Network Structure of Gene Annotations.

Glass K, Girvan M.

PLoS Comput Biol. 2015 Nov 20;11(11):e1004565. doi: 10.1371/journal.pcbi.1004565. eCollection 2015 Nov.

15.

Impact of imperfect information on network attack.

Melchionna A, Caloca J, Squires S, Antonsen TM, Ott E, Girvan M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Mar;91(3):032807. Epub 2015 Mar 13.

PMID:
25871157
16.

Spatially embedded growing small-world networks.

Zitin A, Gorowara A, Squires S, Herrera M, Antonsen TM, Girvan M, Ott E.

Sci Rep. 2014 Nov 14;4:7047. doi: 10.1038/srep07047.

17.

Stability of Boolean networks: the joint effects of topology and update rules.

Squires S, Pomerance A, Girvan M, Ott E.

Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Aug;90(2):022814. Epub 2014 Aug 25. Erratum in: Phys Rev E Stat Nonlin Soft Matter Phys. 2014 Oct;90(4):049905.

PMID:
25215788
18.

Consequences of anomalous diffusion in disordered systems under cyclic forcing.

Mailman M, Harrington M, Girvan M, Losert W.

Phys Rev Lett. 2014 Jun 6;112(22):228001. Epub 2014 Jun 3.

PMID:
24949788
19.
20.

Robustness of network measures to link errors.

Platig J, Ott E, Girvan M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Dec;88(6):062812. Epub 2013 Dec 11.

PMID:
24483516
21.

Modeling the dynamics of bivalent histone modifications.

Ku WL, Girvan M, Yuan GC, Sorrentino F, Ott E.

PLoS One. 2013 Nov 1;8(11):e77944. doi: 10.1371/journal.pone.0077944. eCollection 2013.

22.

Weakly explosive percolation in directed networks.

Squires S, Sytwu K, Alcala D, Antonsen TM, Ott E, Girvan M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 May;87(5):052127. Epub 2013 May 22.

PMID:
23767507
23.

Analysis of multiple physical parameters for mechanical phenotyping of living cells.

Kiessling TR, Herrera M, Nnetu KD, Balzer EM, Girvan M, Fritsch AW, Martin SS, Käs JA, Losert W.

Eur Biophys J. 2013 May;42(5):383-94. doi: 10.1007/s00249-013-0888-y. Epub 2013 Mar 17.

PMID:
23504046
24.

A network function-based definition of communities in complex networks.

Chauhan S, Girvan M, Ott E.

Chaos. 2012 Sep;22(3):033129.

PMID:
23020468
25.

Dynamical instability in Boolean networks as a percolation problem.

Squires S, Ott E, Girvan M.

Phys Rev Lett. 2012 Aug 24;109(8):085701. Epub 2012 Aug 24.

PMID:
23002759
26.

Stability of Boolean networks with generalized canalizing rules.

Pomerance A, Girvan M, Ott E.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Apr;85(4 Pt 2):046106. Epub 2012 Apr 11.

PMID:
22680537
27.

Onset of irreversibility in cyclic shear of granular packings.

Slotterback S, Mailman M, Ronaszegi K, van Hecke M, Girvan M, Losert W.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Feb;85(2 Pt 1):021309. Epub 2012 Feb 27.

PMID:
22463204
28.

Multiscale dynamics in communities of phase oscillators.

Anderson D, Tenzer A, Barlev G, Girvan M, Antonsen TM, Ott E.

Chaos. 2012 Mar;22(1):013102. doi: 10.1063/1.3672513.

PMID:
22462978
29.

Interpreting patterns of gene expression: signatures of coregulation, the data processing inequality, and triplet motifs.

Ku WL, Duggal G, Li Y, Girvan M, Ott E.

PLoS One. 2012;7(2):e31969. doi: 10.1371/journal.pone.0031969. Epub 2012 Feb 29.

30.

Implications of functional similarity for gene regulatory interactions.

Glass K, Ott E, Losert W, Girvan M.

J R Soc Interface. 2012 Jul 7;9(72):1625-36. doi: 10.1098/rsif.2011.0585. Epub 2012 Feb 1.

31.

Path to fracture in granular flows: dynamics of contact networks.

Herrera M, McCarthy S, Slotterback S, Cephas E, Losert W, Girvan M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Jun;83(6 Pt 1):061303. Epub 2011 Jun 27.

PMID:
21797354
32.

Local synchronization in complex networks of coupled oscillators.

Stout J, Whiteway M, Ott E, Girvan M, Antonsen TM.

Chaos. 2011 Jun;21(2):025109. doi: 10.1063/1.3581168.

PMID:
21721787
33.

Predicting maximum tree heights and other traits from allometric scaling and resource limitations.

Kempes CP, West GB, Crowell K, Girvan M.

PLoS One. 2011;6(6):e20551. doi: 10.1371/journal.pone.0020551. Epub 2011 Jun 13.

34.

Map model for synchronization of systems of many coupled oscillators.

Barlev G, Girvan M, Ott E.

Chaos. 2010 Jun;20(2):023109. doi: 10.1063/1.3357983.

PMID:
20590305
35.

Providing intensive care. Interview by Teresa O'Connor.

Ryan S, Snowden W, Obele M, Girvan M, Robinson G.

Nurs N Z. 2010 May;16(4):15-7. No abstract available.

PMID:
20572538
36.

Spectral properties of networks with community structure.

Chauhan S, Girvan M, Ott E.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Nov;80(5 Pt 2):056114. Epub 2009 Nov 24. Erratum in: Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Feb;85(2 Pt 2):029906.

PMID:
20365050
37.

The effect of network topology on the stability of discrete state models of genetic control.

Pomerance A, Ott E, Girvan M, Losert W.

Proc Natl Acad Sci U S A. 2009 May 19;106(20):8209-14. doi: 10.1073/pnas.0900142106. Epub 2009 Apr 29.

38.

Echo phenomena in large systems of coupled oscillators.

Ott E, Platig JH, Antonsen TM, Girvan M.

Chaos. 2008 Sep;18(3):037115. doi: 10.1063/1.2973816.

PMID:
19045489
39.

External periodic driving of large systems of globally coupled phase oscillators.

Antonsen TM Jr, Faghih RT, Girvan M, Ott E, Platig J.

Chaos. 2008 Sep;18(3):037112. doi: 10.1063/1.2952447.

PMID:
19045486
40.

The size of the sync basin.

Wiley DA, Strogatz SH, Girvan M.

Chaos. 2006 Mar;16(1):015103.

PMID:
16599769
41.

Policing stabilizes construction of social niches in primates.

Flack JC, Girvan M, de Waal FB, Krakauer DC.

Nature. 2006 Jan 26;439(7075):426-9.

PMID:
16437106
42.

Soil microbial community response to land use change in an agricultural landscape of western Kenya.

Bossio DA, Girvan MS, Verchot L, Bullimore J, Borelli T, Albrecht A, Scow KM, Ball AS, Pretty JN, Osborn AM.

Microb Ecol. 2005 Jan;49(1):50-62. Epub 2005 Jan 24.

PMID:
15690227
43.

Bacterial diversity promotes community stability and functional resilience after perturbation.

Girvan MS, Campbell CD, Killham K, Prosser JI, Glover LA.

Environ Microbiol. 2005 Mar;7(3):301-13.

PMID:
15683391
44.

Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens.

Girvan MS, Bullimore J, Ball AS, Pretty JN, Osborn AM.

Appl Environ Microbiol. 2004 May;70(5):2692-701.

45.

Finding and evaluating community structure in networks.

Newman ME, Girvan M.

Phys Rev E Stat Nonlin Soft Matter Phys. 2004 Feb;69(2 Pt 2):026113. Epub 2004 Feb 26.

PMID:
14995526
46.

Soil type is the primary determinant of the composition of the total and active bacterial communities in arable soils.

Girvan MS, Bullimore J, Pretty JN, Osborn AM, Ball AS.

Appl Environ Microbiol. 2003 Mar;69(3):1800-9.

47.

Optimal design, robustness, and risk aversion.

Newman ME, Girvan M, Farmer JD.

Phys Rev Lett. 2002 Jul 8;89(2):028301. Epub 2002 Jun 21.

PMID:
12097019
48.

Community structure in social and biological networks.

Girvan M, Newman ME.

Proc Natl Acad Sci U S A. 2002 Jun 11;99(12):7821-6. Review.

49.

Simple model of epidemics with pathogen mutation.

Girvan M, Callaway DS, Newman ME, Strogatz SH.

Phys Rev E Stat Nonlin Soft Matter Phys. 2002 Mar;65(3 Pt 1):031915. Epub 2002 Mar 6.

PMID:
11909117
50.

Structure of growing social networks.

Jin EM, Girvan M, Newman ME.

Phys Rev E Stat Nonlin Soft Matter Phys. 2001 Oct;64(4 Pt 2):046132. Epub 2001 Sep 26.

PMID:
11690115

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