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Items: 4

1.

iSeg: an efficient algorithm for segmentation of genomic and epigenomic data.

Girimurugan SB, Liu Y, Lung PY, Vera DL, Dennis JH, Bass HW, Zhang J.

BMC Bioinformatics. 2018 Apr 11;19(1):131. doi: 10.1186/s12859-018-2140-3.

2.

A Novel Real-Time Genome Comparison Method Using Discrete Wavelet Transform.

Huang HH, Girimurugan SB.

J Comput Biol. 2018 Apr;25(4):405-416. doi: 10.1089/cmb.2017.0115. Epub 2017 Dec 22.

PMID:
29272149
3.

Differential nuclease sensitivity profiling of chromatin reveals biochemical footprints coupled to gene expression and functional DNA elements in maize.

Vera DL, Madzima TF, Labonne JD, Alam MP, Hoffman GG, Girimurugan SB, Zhang J, McGinnis KM, Dennis JH, Bass HW.

Plant Cell. 2014 Oct;26(10):3883-93. doi: 10.1105/tpc.114.130609. Epub 2014 Oct 31.

4.

The spring-loaded genome: nucleosome redistributions are widespread, transient, and DNA-directed.

Sexton BS, Avey D, Druliner BR, Fincher JA, Vera DL, Grau DJ, Borowsky ML, Gupta S, Girimurugan SB, Chicken E, Zhang J, Noble WS, Zhu F, Kingston RE, Dennis JH.

Genome Res. 2014 Feb;24(2):251-9. doi: 10.1101/gr.160150.113. Epub 2013 Dec 5.

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