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Items: 1 to 50 of 62

1.

Vortex fluidics-mediated DNA rescue from formalin-fixed museum specimens.

Totoiu CA, Phillips JM, Reese AT, Majumdar S, Girguis PR, Raston CL, Weiss GA.

PLoS One. 2020 Jan 30;15(1):e0225807. doi: 10.1371/journal.pone.0225807. eCollection 2020.

2.

Hydrogen Does Not Appear To Be a Major Electron Donor for Symbiosis with the Deep-Sea Hydrothermal Vent Tubeworm Riftia pachyptila.

Mitchell JH, Leonard JM, Delaney J, Girguis PR, Scott KM.

Appl Environ Microbiol. 2019 Dec 13;86(1). pii: e01522-19. doi: 10.1128/AEM.01522-19. Print 2019 Dec 13.

PMID:
31628148
3.

The Bacterial Symbionts of Closely Related Hydrothermal Vent Snails With Distinct Geochemical Habitats Show Broad Similarity in Chemoautotrophic Gene Content.

Beinart RA, Luo C, Konstantinidis KT, Stewart FJ, Girguis PR.

Front Microbiol. 2019 Aug 14;10:1818. doi: 10.3389/fmicb.2019.01818. eCollection 2019.

4.

Co-registered Geochemistry and Metatranscriptomics Reveal Unexpected Distributions of Microbial Activity within a Hydrothermal Vent Field.

Olins HC, Rogers DR, Preston C, Ussler W 3rd, Pargett D, Jensen S, Roman B, Birch JM, Scholin CA, Haroon MF, Girguis PR.

Front Microbiol. 2017 Jun 13;8:1042. doi: 10.3389/fmicb.2017.01042. eCollection 2017.

5.

Toward establishing model organisms for marine protists: Successful transfection protocols for Parabodo caudatus (Kinetoplastida: Excavata).

Gomaa F, Garcia PA, Delaney J, Girguis PR, Buie CR, Edgcomb VP.

Environ Microbiol. 2017 Sep;19(9):3487-3499. doi: 10.1111/1462-2920.13830. Epub 2017 Jul 21.

PMID:
28631386
6.

Opinion: Telepresence is a potentially transformative tool for field science.

Marlow J, Borrelli C, Jungbluth SP, Hoffman C, Marlow J, Girguis PR; AT-36 Team.

Proc Natl Acad Sci U S A. 2017 May 9;114(19):4841-4844. doi: 10.1073/pnas.1703514114. No abstract available.

7.

Niche partitioning of diverse sulfur-oxidizing bacteria at hydrothermal vents.

Meier DV, Pjevac P, Bach W, Hourdez S, Girguis PR, Vidoudez C, Amann R, Meyerdierks A.

ISME J. 2017 Jul;11(7):1545-1558. doi: 10.1038/ismej.2017.37. Epub 2017 Apr 4.

8.

Proteome Evolution of Deep-Sea Hydrothermal Vent Alvinellid Polychaetes Supports the Ancestry of Thermophily and Subsequent Adaptation to Cold in Some Lineages.

Fontanillas E, Galzitskaya OV, Lecompte O, Lobanov MY, Tanguy A, Mary J, Girguis PR, Hourdez S, Jollivet D.

Genome Biol Evol. 2017 Feb 1;9(2):279-296. doi: 10.1093/gbe/evw298.

9.

Geochemically distinct carbon isotope distributions in Allochromatium vinosum DSM 180T grown photoautotrophically and photoheterotrophically.

Tang T, Mohr W, Sattin SR, Rogers DR, Girguis PR, Pearson A.

Geobiology. 2017 Mar;15(2):324-339. doi: 10.1111/gbi.12221. Epub 2017 Jan 1.

PMID:
28042698
10.

Metatranscriptional Response of Chemoautotrophic Ifremeria nautilei Endosymbionts to Differing Sulfur Regimes.

Seston SL, Beinart RA, Sarode N, Shockey AC, Ranjan P, Ganesh S, Girguis PR, Stewart FJ.

Front Microbiol. 2016 Jul 19;7:1074. doi: 10.3389/fmicb.2016.01074. eCollection 2016.

11.

Heterotrophic Proteobacteria in the vicinity of diffuse hydrothermal venting.

Meier DV, Bach W, Girguis PR, Gruber-Vodicka HR, Reeves EP, Richter M, Vidoudez C, Amann R, Meyerdierks A.

Environ Microbiol. 2016 Dec;18(12):4348-4368. doi: 10.1111/1462-2920.13304. Epub 2016 Apr 28.

PMID:
27001712
12.

A distinct and active bacterial community in cold oxygenated fluids circulating beneath the western flank of the Mid-Atlantic ridge.

Meyer JL, Jaekel U, Tully BJ, Glazer BT, Wheat CG, Lin HT, Hsieh CC, Cowen JP, Hulme SM, Girguis PR, Huber JA.

Sci Rep. 2016 Mar 3;6:22541. doi: 10.1038/srep22541.

13.

NC10 bacteria in marine oxygen minimum zones.

Padilla CC, Bristow LA, Sarode N, Garcia-Robledo E, Gómez Ramírez E, Benson CR, Bourbonnais A, Altabet MA, Girguis PR, Thamdrup B, Stewart FJ.

ISME J. 2016 Aug;10(8):2067-71. doi: 10.1038/ismej.2015.262. Epub 2016 Feb 26.

14.

Key Factors Influencing Rates of Heterotrophic Sulfate Reduction in Active Seafloor Hydrothermal Massive Sulfide Deposits.

Frank KL, Rogers KL, Rogers DR, Johnston DT, Girguis PR.

Front Microbiol. 2015 Dec 22;6:1449. doi: 10.3389/fmicb.2015.01449. eCollection 2015.

15.

Ubiquitous Presence and Novel Diversity of Anaerobic Alkane Degraders in Cold Marine Sediments.

Gittel A, Donhauser J, Røy H, Girguis PR, Jørgensen BB, Kjeldsen KU.

Front Microbiol. 2015 Dec 17;6:1414. doi: 10.3389/fmicb.2015.01414. eCollection 2015.

16.

Nanoporous microscale microbial incubators.

Ge Z, Girguis PR, Buie CR.

Lab Chip. 2016 Feb 7;16(3):480-8. doi: 10.1039/c5lc00978b.

PMID:
26584739
17.

Carbon fixation by basalt-hosted microbial communities.

Orcutt BN, Sylvan JB, Rogers DR, Delaney J, Lee RW, Girguis PR.

Front Microbiol. 2015 Sep 7;6:904. doi: 10.3389/fmicb.2015.00904. eCollection 2015.

18.

Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores.

Sanders JG, Beichman AC, Roman J, Scott JJ, Emerson D, McCarthy JJ, Girguis PR.

Nat Commun. 2015 Sep 22;6:8285. doi: 10.1038/ncomms9285.

19.

Patterns of sulfur isotope fractionation during microbial sulfate reduction.

Bradley AS, Leavitt WD, Schmidt M, Knoll AH, Girguis PR, Johnston DT.

Geobiology. 2016 Jan;14(1):91-101. doi: 10.1111/gbi.12149. Epub 2015 Jul 20.

PMID:
26189479
20.

Enhancing the response of microbial fuel cell based toxicity sensors to Cu(II) with the applying of flow-through electrodes and controlled anode potentials.

Jiang Y, Liang P, Zhang C, Bian Y, Yang X, Huang X, Girguis PR.

Bioresour Technol. 2015 Aug;190:367-72. doi: 10.1016/j.biortech.2015.04.127. Epub 2015 May 7.

PMID:
25965954
21.

The uptake and excretion of partially oxidized sulfur expands the repertoire of energy resources metabolized by hydrothermal vent symbioses.

Beinart RA, Gartman A, Sanders JG, Luther GW, Girguis PR.

Proc Biol Sci. 2015 May 7;282(1806):20142811. doi: 10.1098/rspb.2014.2811.

22.
23.

Electron uptake by iron-oxidizing phototrophic bacteria.

Bose A, Gardel EJ, Vidoudez C, Parra EA, Girguis PR.

Nat Commun. 2014 Feb 26;5:3391. doi: 10.1038/ncomms4391.

PMID:
24569675
24.

Geomicrobiological linkages between short-chain alkane consumption and sulfate reduction rates in seep sediments.

Bose A, Rogers DR, Adams MM, Joye SB, Girguis PR.

Front Microbiol. 2013 Dec 12;4:386. doi: 10.3389/fmicb.2013.00386. eCollection 2013.

25.

Characterizing the plasticity of nitrogen metabolism by the host and symbionts of the hydrothermal vent chemoautotrophic symbioses Ridgeia piscesae.

Liao L, Wankel SD, Wu M, Cavanaugh CM, Girguis PR.

Mol Ecol. 2014 Mar;23(6):1544-57. doi: 10.1111/mec.12460. Epub 2013 Nov 18.

PMID:
24237389
26.

Oxygen, ecology, and the Cambrian radiation of animals.

Sperling EA, Frieder CA, Raman AV, Girguis PR, Levin LA, Knoll AH.

Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):13446-51. doi: 10.1073/pnas.1312778110. Epub 2013 Jul 29.

27.

Autonomous application of quantitative PCR in the deep sea: in situ surveys of aerobic methanotrophs using the deep-sea environmental sample processor.

Ussler W 3rd, Preston C, Tavormina P, Pargett D, Jensen S, Roman B, Marin R 3rd, Shah SR, Girguis PR, Birch JM, Orphan V, Scholin C.

Environ Sci Technol. 2013 Aug 20;47(16):9339-46. doi: 10.1021/es4023199. Epub 2013 Aug 8.

PMID:
23883184
28.

Anaerobic oxidation of short-chain alkanes in hydrothermal sediments: potential influences on sulfur cycling and microbial diversity.

Adams MM, Hoarfrost AL, Bose A, Joye SB, Girguis PR.

Front Microbiol. 2013 May 14;4:110. doi: 10.3389/fmicb.2013.00110. eCollection 2013.

29.

Metatranscriptomics reveal differences in in situ energy and nitrogen metabolism among hydrothermal vent snail symbionts.

Sanders JG, Beinart RA, Stewart FJ, Delong EF, Girguis PR.

ISME J. 2013 Aug;7(8):1556-67. doi: 10.1038/ismej.2013.45. Epub 2013 Apr 25.

30.

Respiration control of multicellularity in Bacillus subtilis by a complex of the cytochrome chain with a membrane-embedded histidine kinase.

Kolodkin-Gal I, Elsholz AK, Muth C, Girguis PR, Kolter R, Losick R.

Genes Dev. 2013 Apr 15;27(8):887-99. doi: 10.1101/gad.215244.113. Epub 2013 Apr 18.

31.

Assessing the influence of physical, geochemical and biological factors on anaerobic microbial primary productivity within hydrothermal vent chimneys.

Olins HC, Rogers DR, Frank KL, Vidoudez C, Girguis PR.

Geobiology. 2013 May;11(3):279-93. doi: 10.1111/gbi.12034. Epub 2013 Mar 29.

PMID:
23551687
32.

Low temperature geomicrobiology follows host rock composition along a geochemical gradient in lau basin.

Sylvan JB, Sia TY, Haddad AG, Briscoe LJ, Toner BM, Girguis PR, Edwards KJ.

Front Microbiol. 2013 Mar 27;4:61. doi: 10.3389/fmicb.2013.00061. eCollection 2013.

33.

Characterizing the distribution and rates of microbial sulfate reduction at Middle Valley hydrothermal vents.

Frank KL, Rogers DR, Olins HC, Vidoudez C, Girguis PR.

ISME J. 2013 Jul;7(7):1391-401. doi: 10.1038/ismej.2013.17. Epub 2013 Mar 28.

34.

Characterizing microbial community and geochemical dynamics at hydrothermal vents using osmotically driven continuous fluid samplers.

Robidart J, Callister SJ, Song P, Nicora CD, Wheat CG, Girguis PR.

Environ Sci Technol. 2013 May 7;47(9):4399-407. doi: 10.1021/es3037302. Epub 2013 Apr 5.

PMID:
23495803
35.

Characterizing the distribution of methane sources and cycling in the deep sea via in situ stable isotope analysis.

Wankel SD, Huang YW, Gupta M, Provencal R, Leen JB, Fahrland A, Vidoudez C, Girguis PR.

Environ Sci Technol. 2013 Feb 5;47(3):1478-86. doi: 10.1021/es303661w. Epub 2013 Jan 10.

PMID:
23240620
36.

Evidence for the role of endosymbionts in regional-scale habitat partitioning by hydrothermal vent symbioses.

Beinart RA, Sanders JG, Faure B, Sylva SP, Lee RW, Becker EL, Gartman A, Luther GW 3rd, Seewald JS, Fisher CR, Girguis PR.

Proc Natl Acad Sci U S A. 2012 Nov 20;109(47):E3241-50. doi: 10.1073/pnas.1202690109. Epub 2012 Oct 22.

37.

Anaerobic methane oxidation in metalliferous hydrothermal sediments: influence on carbon flux and decoupling from sulfate reduction.

Wankel SD, Adams MM, Johnston DT, Hansel CM, Joye SB, Girguis PR.

Environ Microbiol. 2012 Oct;14(10):2726-40. doi: 10.1111/j.1462-2920.2012.02825.x. Epub 2012 Jul 25.

PMID:
22827909
38.

Expression and putative function of innate immunity genes under in situ conditions in the symbiotic hydrothermal vent tubeworm Ridgeia piscesae.

Nyholm SV, Song P, Dang J, Bunce C, Girguis PR.

PLoS One. 2012;7(6):e38267. doi: 10.1371/journal.pone.0038267. Epub 2012 Jun 11.

39.

Exploring the limit of metazoan thermal tolerance via comparative proteomics: thermally induced changes in protein abundance by two hydrothermal vent polychaetes.

Dilly GF, Young CR, Lane WS, Pangilinan J, Girguis PR.

Proc Biol Sci. 2012 Aug 22;279(1741):3347-56. doi: 10.1098/rspb.2012.0098. Epub 2012 May 2.

40.

Duty cycling influences current generation in multi-anode environmental microbial fuel cells.

Gardel EJ, Nielsen ME, Grisdela PT Jr, Girguis PR.

Environ Sci Technol. 2012 May 1;46(9):5222-9. doi: 10.1021/es204622m. Epub 2012 Apr 20.

PMID:
22497491
41.

Thermodynamics and kinetics of sulfide oxidation by oxygen: a look at inorganically controlled reactions and biologically mediated processes in the environment.

Luther GW 3rd, Findlay AJ, Macdonald DJ, Owings SM, Hanson TE, Beinart RA, Girguis PR.

Front Microbiol. 2011 Apr 9;2:62. doi: 10.3389/fmicb.2011.00062. eCollection 2011.

42.

Hydrogen is an energy source for hydrothermal vent symbioses.

Petersen JM, Zielinski FU, Pape T, Seifert R, Moraru C, Amann R, Hourdez S, Girguis PR, Wankel SD, Barbe V, Pelletier E, Fink D, Borowski C, Bach W, Dubilier N.

Nature. 2011 Aug 10;476(7359):176-80. doi: 10.1038/nature10325.

PMID:
21833083
43.

Linking hydrothermal geochemistry to organismal physiology: physiological versatility in Riftia pachyptila from sedimented and basalt-hosted vents.

Robidart JC, Roque A, Song P, Girguis PR.

PLoS One. 2011;6(7):e21692. doi: 10.1371/journal.pone.0021692. Epub 2011 Jul 14.

44.

Benthic microbial fuel cell as direct power source for an acoustic modem and seawater oxygen/temperature sensor system.

Gong Y, Radachowsky SE, Wolf M, Nielsen ME, Girguis PR, Reimers CE.

Environ Sci Technol. 2011 Jun 1;45(11):5047-53. doi: 10.1021/es104383q. Epub 2011 May 5.

PMID:
21545151
45.

Measuring isotope fractionation by autotrophic microorganisms and enzymes.

Scott KM, Fox G, Girguis PR.

Methods Enzymol. 2011;494:281-99. doi: 10.1016/B978-0-12-385112-3.00014-7.

PMID:
21402220
46.

The metabolic demands of endosymbiotic chemoautotrophic metabolism on host physiological capacities.

Childress JJ, Girguis PR.

J Exp Biol. 2011 Jan 15;214(Pt 2):312-25. doi: 10.1242/jeb.049023. Review.

47.

Harnessing energy from marine productivity using bioelectrochemical systems.

Girguis PR, Nielsen ME, Figueroa I.

Curr Opin Biotechnol. 2010 Jun;21(3):252-8. doi: 10.1016/j.copbio.2010.03.015. Epub 2010 Apr 9. Review.

PMID:
20382519
48.

Influence of substrate on electron transfer mechanisms in chambered benthic microbial fuel cells.

Nielsen ME, Wu DM, Girguis PR, Reimers CE.

Environ Sci Technol. 2009 Nov 15;43(22):8671-7. doi: 10.1021/es9013773.

PMID:
20028069
49.

Thiotaurine and hypotaurine contents in hydrothermal-vent polychaetes without thiotrophic endosymbionts: correlation With sulfide exposure.

Yancey PH, Ishikawa J, Meyer B, Girguis PR, Lee RW.

J Exp Zool A Ecol Genet Physiol. 2009 Jul 1;311(6):439-47. doi: 10.1002/jez.541.

PMID:
19402134
50.

Quantitative population dynamics of microbial communities in plankton-fed microbial fuel cells.

White HK, Reimers CE, Cordes EE, Dilly GF, Girguis PR.

ISME J. 2009 Jun;3(6):635-46. doi: 10.1038/ismej.2009.12. Epub 2009 Feb 26.

PMID:
19242533

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