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Congruent population genetic structures and divergence histories in anther-smut fungi and their host plants Silene italica and the S. nutans species complex.

Hartmann FE, Snirc A, Cornille A, Godé C, Touzet P, Van Rossum F, Fournier E, Le Prieur S, Shykoff J, Giraud T.

Mol Ecol. 2020 Feb 18. doi: 10.1111/mec.15387. [Epub ahead of print]


Differential gene expression between fungal mating types is associated with sequence degeneration.

Ma WJ, Carpentier F, Giraud T, Hood M.

Genome Biol Evol. 2020 Feb 14. pii: evaa028. doi: 10.1093/gbe/evaa028. [Epub ahead of print]


Independent domestication events in the blue-cheese fungus Penicillium roqueforti.

Dumas E, Feurtey A, Rodríguez de la Vega RC, Le Prieur S, Snirc A, Coton M, Thierry A, Coton E, Le Piver M, Roueyre D, Ropars J, Branca A, Giraud T.

Mol Ecol. 2020 Jan 20. doi: 10.1111/mec.15359. [Epub ahead of print]


Cause and Effectors: Whole-Genome Comparisons Reveal Shared but Rapidly Evolving Effector Sets among Host-Specific Plant-Castrating Fungi.

Beckerson WC, Rodríguez de la Vega RC, Hartmann FE, Duhamel M, Giraud T, Perlin MH.

mBio. 2019 Nov 5;10(6). pii: e02391-19. doi: 10.1128/mBio.02391-19.


The complex evolutionary history of apricots: Species divergence, gene flow and multiple domestication events.

Liu S, Cornille A, Decroocq S, Tricon D, Chague A, Eyquard JP, Liu WS, Giraud T, Decroocq V.

Mol Ecol. 2019 Dec;28(24):5299-5314. doi: 10.1111/mec.15296. Epub 2019 Nov 22.


Higher gene flow in sex-related chromosomes than in autosomes during fungal divergence.

Hartmann FE, Rodríguez de la Vega RC, Gladieux P, Ma WJ, Hood ME, Giraud T.

Mol Biol Evol. 2019 Oct 25. pii: msz252. doi: 10.1093/molbev/msz252. [Epub ahead of print]


Population genomics revealed cryptic species within host-specific zombie-ant fungi (Ophiocordyceps unilateralis).

Kobmoo N, Mongkolsamrit S, Arnamnart N, Luangsa-Ard JJ, Giraud T.

Mol Phylogenet Evol. 2019 Nov;140:106580. doi: 10.1016/j.ympev.2019.106580. Epub 2019 Aug 13.


Understanding Adaptation, Coevolution, Host Specialization, and Mating System in Castrating Anther-Smut Fungi by Combining Population and Comparative Genomics.

Hartmann FE, Rodríguez de la Vega RC, Carpentier F, Gladieux P, Cornille A, Hood ME, Giraud T.

Annu Rev Phytopathol. 2019 Aug 25;57:431-457. doi: 10.1146/annurev-phyto-082718-095947. Epub 2019 Jul 23.


CM01: a facility for cryo-electron microscopy at the European Synchrotron.

Kandiah E, Giraud T, de Maria Antolinos A, Dobias F, Effantin G, Flot D, Hons M, Schoehn G, Susini J, Svensson O, Leonard GA, Mueller-Dieckmann C.

Acta Crystallogr D Struct Biol. 2019 Jun 1;75(Pt 6):528-535. doi: 10.1107/S2059798319006880. Epub 2019 May 28.


BioRoot RCS Extracts Modulate the Early Mechanisms of Periodontal Inflammation and Regeneration.

Jeanneau C, Giraud T, Laurent P, About I.

J Endod. 2019 Aug;45(8):1016-1023. doi: 10.1016/j.joen.2019.04.003. Epub 2019 Jun 1.


Investigating unset endodontic sealers' eugenol and hydrocortisone roles in modulating the initial steps of inflammation.

Jeanneau C, Giraud T, Milan JL, About I.

Clin Oral Investig. 2020 Feb;24(2):639-647. doi: 10.1007/s00784-019-02957-2. Epub 2019 May 21.


Sympatry and interference of divergent Microbotryum pathogen species.

Hood ME, Antonovics J, Wolf M, Stern ZL, Giraud T, Abbate JL.

Ecol Evol. 2019 Apr 12;9(9):5457-5467. doi: 10.1002/ece3.5140. eCollection 2019 May.


An international survey on the use of calcium silicate-based sealers in non-surgical endodontic treatment.

Guivarc'h M, Jeanneau C, Giraud T, Pommel L, About I, Azim AA, Bukiet F.

Clin Oral Investig. 2020 Jan;24(1):417-424. doi: 10.1007/s00784-019-02920-1. Epub 2019 May 18.


Convergent recombination cessation between mating-type genes and centromeres in selfing anther-smut fungi.

Carpentier F, Rodríguez de la Vega RC, Branco S, Snirc A, Coelho MA, Hood ME, Giraud T.

Genome Res. 2019 Jun;29(6):944-953. doi: 10.1101/gr.242578.118. Epub 2019 May 1.


Little Evidence of Antagonistic Selection in the Evolutionary Strata of Fungal Mating-Type Chromosomes (Microbotryum lychnidis-dioicae).

Bazzicalupo AL, Carpentier F, Otto SP, Giraud T.

G3 (Bethesda). 2019 Jun 5;9(6):1987-1998. doi: 10.1534/g3.119.400242.


Who sells to whom in the suburbs? Home price inflation and the dynamics of sellers and buyers in the metropolitan region of Paris, 1996-2012.

Le Goix R, Giraud T, Cura R, Le Corre T, Migozzi J.

PLoS One. 2019 Mar 21;14(3):e0213169. doi: 10.1371/journal.pone.0213169. eCollection 2019.


Multiple infections, relatedness and virulence in the anther-smut fungus castrating Saponaria plants.

Fortuna TM, Namias A, Snirc A, Branca A, Hood ME, Raquin C, Shykoff JA, Giraud T.

Mol Ecol. 2018 Dec;27(23):4947-4959. doi: 10.1111/mec.14911. Epub 2018 Nov 22.


Pulp capping materials modulate the balance between inflammation and regeneration.

Giraud T, Jeanneau C, Rombouts C, Bakhtiar H, Laurent P, About I.

Dent Mater. 2019 Jan;35(1):24-35. doi: 10.1016/ Epub 2018 Sep 27. Review.


Synthesis, oligonucleotide incorporation and fluorescence properties in DNA of a bicyclic thymine analogue.

Lawson CP, Füchtbauer AF, Wranne MS, Giraud T, Floyd T, Dumat B, Andersen NK, H El-Sagheer A, Brown T, Gradén H, Wilhelmsson LM, Grøtli M.

Sci Rep. 2018 Sep 18;8(1):13970. doi: 10.1038/s41598-018-31897-2.


Tricalcium Silicate Capping Materials Modulate Pulp Healing and Inflammatory Activity In Vitro.

Giraud T, Jeanneau C, Bergmann M, Laurent P, About I.

J Endod. 2018 Nov;44(11):1686-1691. doi: 10.1016/j.joen.2018.06.009. Epub 2018 Sep 11.


A genome scan of diversifying selection in Ophiocordyceps zombie-ant fungi suggests a role for enterotoxins in co-evolution and host specificity.

Kobmoo N, Wichadakul D, Arnamnart N, Rodríguez De La Vega RC, Luangsa-Ard JJ, Giraud T.

Mol Ecol. 2018 Sep;27(18):3582-3598. doi: 10.1111/mec.14813. Epub 2018 Aug 29.


Co-occurrence among three divergent plant-castrating fungi in the same Silene host species.

Abbate JL, Gladieux P, Hood ME, de Vienne DM, Antonovics J, Snirc A, Giraud T.

Mol Ecol. 2018 Jul 21. doi: 10.1111/mec.14805. [Epub ahead of print]


ID30B - a versatile beamline for macromolecular crystallography experiments at the ESRF.

McCarthy AA, Barrett R, Beteva A, Caserotto H, Dobias F, Felisaz F, Giraud T, Guijarro M, Janocha R, Khadrouche A, Lentini M, Leonard GA, Lopez Marrero M, Malbet-Monaco S, McSweeney S, Nurizzo D, Papp G, Rossi C, Sinoir J, Sorez C, Surr J, Svensson O, Zander U, Cipriani F, Theveneau P, Mueller-Dieckmann C.

J Synchrotron Radiat. 2018 Jul 1;25(Pt 4):1249-1260. doi: 10.1107/S1600577518007166. Epub 2018 Jun 27.


Multiple convergent supergene evolution events in mating-type chromosomes.

Branco S, Carpentier F, Rodríguez de la Vega RC, Badouin H, Snirc A, Le Prieur S, Coelho MA, de Vienne DM, Hartmann FE, Begerow D, Hood ME, Giraud T.

Nat Commun. 2018 May 21;9(1):2000. doi: 10.1038/s41467-018-04380-9.


Gene Presence-Absence Polymorphism in Castrating Anther-Smut Fungi: Recent Gene Gains and Phylogeographic Structure.

Hartmann FE, Rodríguez de la Vega RC, Brandenburg JT, Carpentier F, Giraud T.

Genome Biol Evol. 2018 Apr 1;10(5):1298-1314. doi: 10.1093/gbe/evy089.


Online Raman spectroscopy for structural biology on beamline ID29 of the ESRF.

von Stetten D, Giraud T, Bui S, Steiner RA, Fihman F, de Sanctis D, Royant A.

J Struct Biol. 2017 Nov;200(2):124-127. doi: 10.1016/j.jsb.2017.10.004. Epub 2017 Oct 16.


Light-cured Tricalcium Silicate Toxicity to the Dental Pulp.

Jeanneau C, Laurent P, Rombouts C, Giraud T, About I.

J Endod. 2017 Dec;43(12):2074-2080. doi: 10.1016/j.joen.2017.07.010. Epub 2017 Oct 9.


Evolutionary strata on young mating-type chromosomes despite the lack of sexual antagonism.

Branco S, Badouin H, Rodríguez de la Vega RC, Gouzy J, Carpentier F, Aguileta G, Siguenza S, Brandenburg JT, Coelho MA, Hood ME, Giraud T.

Proc Natl Acad Sci U S A. 2017 Jul 3;114(27):7067-7072. doi: 10.1073/pnas.1701658114. Epub 2017 Jun 19.


Fungal Sex: The Basidiomycota.

Coelho MA, Bakkeren G, Sun S, Hood ME, Giraud T.

Microbiol Spectr. 2017 Jun;5(3). doi: 10.1128/microbiolspec.FUNK-0046-2016. Review.


Fungi as a Source of Food.

Dupont J, Dequin S, Giraud T, Le Tacon F, Marsit S, Ropars J, Richard F, Selosse MA.

Microbiol Spectr. 2017 Jun;5(3). doi: 10.1128/microbiolspec.FUNK-0030-2016. Review.


Complement Activation by Pulp Capping Materials Plays a Significant Role in Both Inflammatory and Pulp Stem Cells' Recruitment.

Giraud T, Rufas P, Chmilewsky F, Rombouts C, Dejou J, Jeanneau C, About I.

J Endod. 2017 Jul;43(7):1104-1110. doi: 10.1016/j.joen.2017.02.016. Epub 2017 May 17.


Introduction: microbial local adaptation: insights from natural populations, genomics and experimental evolution.

Giraud T, Koskella B, Laine AL.

Mol Ecol. 2017 Apr;26(7):1703-1710. doi: 10.1111/mec.14091. No abstract available.


Blue cheese-making has shaped the population genetic structure of the mould Penicillium roqueforti.

Ropars J, López-Villavicencio M, Snirc A, Lacoste S, Giraud T.

PLoS One. 2017 Mar 1;12(3):e0171387. doi: 10.1371/journal.pone.0171387. eCollection 2017.


Co-occurrence and hybridization of anther-smut pathogens specialized on Dianthus hosts.

Petit E, Silver C, Cornille A, Gladieux P, Rosenthal L, Bruns E, Yee S, Antonovics J, Giraud T, Hood ME.

Mol Ecol. 2017 Apr;26(7):1877-1890. doi: 10.1111/mec.14073. Epub 2017 Mar 22.


Crop-to-wild gene flow and its fitness consequences for a wild fruit tree: Towards a comprehensive conservation strategy of the wild apple in Europe.

Feurtey A, Cornille A, Shykoff JA, Snirc A, Giraud T.

Evol Appl. 2016 Dec 26;10(2):180-188. doi: 10.1111/eva.12441. eCollection 2017 Feb.


Pulp Vascularization during Tooth Development, Regeneration, and Therapy.

Rombouts C, Giraud T, Jeanneau C, About I.

J Dent Res. 2017 Feb;96(2):137-144. doi: 10.1177/0022034516671688. Epub 2016 Oct 11. Review.


Widespread selective sweeps throughout the genome of model plant pathogenic fungi and identification of effector candidates.

Badouin H, Gladieux P, Gouzy J, Siguenza S, Aguileta G, Snirc A, Le Prieur S, Jeziorski C, Branca A, Giraud T.

Mol Ecol. 2017 Apr;26(7):2041-2062. doi: 10.1111/mec.13976. Epub 2017 Jan 27.


Polymorphic Microsatellite Markers for the Tetrapolar Anther-Smut Fungus Microbotryum saponariae Based on Genome Sequencing.

Fortuna TM, Snirc A, Badouin H, Gouzy J, Siguenza S, Esquerre D, Le Prieur S, Shykoff JA, Giraud T.

PLoS One. 2016 Nov 10;11(11):e0165656. doi: 10.1371/journal.pone.0165656. eCollection 2016.


Intragenome Diversity of Gene Families Encoding Toxin-like Proteins in Venomous Animals.

Rodríguez de la Vega RC, Giraud T.

Integr Comp Biol. 2016 Nov;56(5):938-949. Epub 2016 Aug 19.


Strong phylogeographic co-structure between the anther-smut fungus and its white campion host.

Feurtey A, Gladieux P, Hood ME, Snirc A, Cornille A, Rosenthal L, Giraud T.

New Phytol. 2016 Nov;212(3):668-679. doi: 10.1111/nph.14125. Epub 2016 Aug 8.


RoboDiff: combining a sample changer and goniometer for highly automated macromolecular crystallography experiments.

Nurizzo D, Bowler MW, Caserotto H, Dobias F, Giraud T, Surr J, Guichard N, Papp G, Guijarro M, Mueller-Dieckmann C, Flot D, McSweeney S, Cipriani F, Theveneau P, Leonard GA.

Acta Crystallogr D Struct Biol. 2016 Aug;72(Pt 8):966-75. doi: 10.1107/S205979831601158X. Epub 2016 Jul 27.


New insights into the history of domesticated and wild apricots and its contribution to Plum pox virus resistance.

Decroocq S, Cornille A, Tricon D, Babayeva S, Chague A, Eyquard JP, Karychev R, Dolgikh S, Kostritsyna T, Liu S, Liu W, Geng W, Liao K, Asma BM, Akparov Z, Giraud T, Decroocq V.

Mol Ecol. 2016 Oct;25(19):4712-29. doi: 10.1111/mec.13772. Epub 2016 Sep 6.


Fertility depression among cheese-making Penicillium roqueforti strains suggests degeneration during domestication.

Ropars J, Lo YC, Dumas E, Snirc A, Begerow D, Rollnik T, Lacoste S, Dupont J, Giraud T, López-Villavicencio M.

Evolution. 2016 Sep;70(9):2099-109. doi: 10.1111/evo.13015. Epub 2016 Aug 21.


Impact of elicited mood on movement expressivity during a fitness task.

Giraud T, Focone F, Isableu B, Martin JC, Demulier V.

Hum Mov Sci. 2016 Oct;49:9-26. doi: 10.1016/j.humov.2016.05.009. Epub 2016 Jun 6.


Lower prevalence but similar fitness in a parasitic fungus at higher radiation levels near Chernobyl.

Aguileta G, Badouin H, Hood ME, Møller AP, Le Prieur S, Snirc A, Siguenza S, Mousseau TA, Shykoff JA, Cuomo CA, Giraud T.

Mol Ecol. 2016 Jul;25(14):3370-83. doi: 10.1111/mec.13675. Epub 2016 Jun 6.


Biodentine Reduces Tumor Necrosis Factor Alpha-induced TRPA1 Expression in Odontoblastlike Cells.

El Karim IA, McCrudden MT, McGahon MK, Curtis TM, Jeanneau C, Giraud T, Irwin CR, Linden GJ, Lundy FT, About I.

J Endod. 2016 Apr;42(4):589-95. doi: 10.1016/j.joen.2015.12.017. Epub 2016 Feb 11.


cloncase: Estimation of sex frequency and effective population size by clonemate resampling in partially clonal organisms.

Ali S, Soubeyrand S, Gladieux P, Giraud T, Leconte M, Gautier A, Mboup M, Chen W, de Vallavieille-Pope C, Enjalbert J.

Mol Ecol Resour. 2016 Jul;16(4):845-61. doi: 10.1111/1755-0998.12511. Epub 2016 Mar 6.


Contrasted patterns in mating-type chromosomes in fungi: hotspots versus coldspots of recombination.

Idnurm A, Hood ME, Johannesson H, Giraud T.

Fungal Biol Rev. 2015 Dec 1;29(3-4):220-229.


Distribution and population structure of the anther smut Microbotryum silenes-acaulis parasitizing an arctic-alpine plant.

Bueker B, Eberlein C, Gladieux P, Schaefer A, Snirc A, Bennett DJ, Begerow D, Hood ME, Giraud T.

Mol Ecol. 2016 Feb;25(3):811-24. doi: 10.1111/mec.13512.


MASSIF-1: a beamline dedicated to the fully automatic characterization and data collection from crystals of biological macromolecules.

Bowler MW, Nurizzo D, Barrett R, Beteva A, Bodin M, Caserotto H, Delagenière S, Dobias F, Flot D, Giraud T, Guichard N, Guijarro M, Lentini M, Leonard GA, McSweeney S, Oskarsson M, Schmidt W, Snigirev A, von Stetten D, Surr J, Svensson O, Theveneau P, Mueller-Dieckmann C.

J Synchrotron Radiat. 2015 Nov;22(6):1540-7. doi: 10.1107/S1600577515016604. Epub 2015 Oct 3.

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