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Items: 1 to 50 of 103

1.

Genetic mapping identifies loci that influence tomato resistance against Colorado potato beetles.

Vargas-Ortiz E, Gonda I, Smeda JR, Mutschler MA, Giovannoni JJ, Jander G.

Sci Rep. 2018 May 9;8(1):7429. doi: 10.1038/s41598-018-24998-5.

2.

Ectopic expression of ORANGE promotes carotenoid accumulation and fruit development in tomato.

Yazdani M, Sun Z, Yuan H, Zeng S, Thannhauser TW, Vrebalov J, Ma Q, Xu Y, Fei Z, Van Eck J, Tian S, Tadmor Y, Giovannoni JJ, Li L.

Plant Biotechnol J. 2018 May 5. doi: 10.1111/pbi.12945. [Epub ahead of print]

3.

Differential metabolism of L-phenylalanine in the formation of aromatic volatiles in melon (Cucumis melo L.) fruit.

Gonda I, Davidovich-Rikanati R, Bar E, Lev S, Jhirad P, Meshulam Y, Wissotsky G, Portnoy V, Burger J, Schaffer AA, Tadmor Y, Giovannoni JJ, Fei Z, Fait A, Katzir N, Lewinsohn E.

Phytochemistry. 2018 Apr;148:122-131. doi: 10.1016/j.phytochem.2017.12.018. Epub 2018 Feb 20.

PMID:
29448137
4.

Deciphering genetic factors that determine melon fruit-quality traits using RNA-Seq-based high-resolution QTL and eQTL mapping.

Galpaz N, Gonda I, Shem-Tov D, Barad O, Tzuri G, Lev S, Fei Z, Xu Y, Mao L, Jiao C, Harel-Beja R, Doron-Faigenboim A, Tzfadia O, Bar E, Meir A, Sa'ar U, Fait A, Halperin E, Kenigswald M, Fallik E, Lombardi N, Kol G, Ronen G, Burger Y, Gur A, Tadmor Y, Portnoy V, Schaffer AA, Lewinsohn E, Giovannoni JJ, Katzir N.

Plant J. 2018 Apr;94(1):169-191. doi: 10.1111/tpj.13838.

PMID:
29385635
5.

High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening.

Shinozaki Y, Nicolas P, Fernandez-Pozo N, Ma Q, Evanich DJ, Shi Y, Xu Y, Zheng Y, Snyder SI, Martin LBB, Ruiz-May E, Thannhauser TW, Chen K, Domozych DS, Catalá C, Fei Z, Mueller LA, Giovannoni JJ, Rose JKC.

Nat Commun. 2018 Jan 25;9(1):364. doi: 10.1038/s41467-017-02782-9.

6.

Overexpression of the class D MADS-box gene Sl-AGL11 impacts fleshy tissue differentiation and structure in tomato fruits.

Huang B, Routaboul JM, Liu M, Deng W, Maza E, Mila I, Hu G, Zouine M, Frasse P, Vrebalov JT, Giovannoni JJ, Li Z, van der Rest B, Bouzayen M.

J Exp Bot. 2017 Oct 13;68(17):4869-4884. doi: 10.1093/jxb/erx303.

PMID:
28992179
7.

An InDel in the Promoter of Al-ACTIVATED MALATE TRANSPORTER9 Selected during Tomato Domestication Determines Fruit Malate Contents and Aluminum Tolerance.

Ye J, Wang X, Hu T, Zhang F, Wang B, Li C, Yang T, Li H, Lu Y, Giovannoni JJ, Zhang Y, Ye Z.

Plant Cell. 2017 Sep;29(9):2249-2268. doi: 10.1105/tpc.17.00211. Epub 2017 Aug 16.

8.

Transient regulation of three clustered tomato class-I small heat-shock chaperone genes by ethylene is mediated by SlMADS-RIN transcription factor.

Shukla V, Upadhyay RK, Tucker ML, Giovannoni JJ, Rudrabhatla SV, Mattoo AK.

Sci Rep. 2017 Jul 25;7(1):6474. doi: 10.1038/s41598-017-06622-0.

9.

AtPDS overexpression in tomato: exposing unique patterns of carotenoid self-regulation and an alternative strategy for the enhancement of fruit carotenoid content.

McQuinn RP, Wong B, Giovannoni JJ.

Plant Biotechnol J. 2018 Feb;16(2):482-494. doi: 10.1111/pbi.12789. Epub 2017 Sep 11.

10.

Metabolomic analyses to evaluate the effect of drought stress on selected African Eggplant accessions.

Mibei EK, Owino WO, Ambuko J, Giovannoni JJ, Onyango AN.

J Sci Food Agric. 2018 Jan;98(1):205-216. doi: 10.1002/jsfa.8458. Epub 2017 Aug 3.

PMID:
28573744
11.

Delayed response to cold stress is characterized by successive metabolic shifts culminating in apple fruit peel necrosis.

Gapper NE, Hertog MLATM, Lee J, Buchanan DA, Leisso RS, Fei Z, Qu G, Giovannoni JJ, Johnston JW, Schaffer RJ, Nicolaï BM, Mattheis JP, Watkins CB, Rudell DR.

BMC Plant Biol. 2017 Apr 21;17(1):77. doi: 10.1186/s12870-017-1030-6.

12.

The Tomato Expression Atlas.

Fernandez-Pozo N, Zheng Y, Snyder SI, Nicolas P, Shinozaki Y, Fei Z, Catala C, Giovannoni JJ, Rose JKC, Mueller LA.

Bioinformatics. 2017 Aug 1;33(15):2397-2398. doi: 10.1093/bioinformatics/btx190.

13.

Carotenoid profiling of the leaves of selected African eggplant accessions subjected to drought stress.

Mibei EK, Ambuko J, Giovannoni JJ, Onyango AN, Owino WO.

Food Sci Nutr. 2016 Apr 18;5(1):113-122. doi: 10.1002/fsn3.370. eCollection 2017 Jan.

14.

Identification of a Solanum pennellii Chromosome 4 Fruit Flavor and Nutritional Quality-Associated Metabolite QTL.

Liu Z, Alseekh S, Brotman Y, Zheng Y, Fei Z, Tieman DM, Giovannoni JJ, Fernie AR, Klee HJ.

Front Plant Sci. 2016 Nov 9;7:1671. eCollection 2016.

15.

Chilling-induced tomato flavor loss is associated with altered volatile synthesis and transient changes in DNA methylation.

Zhang B, Tieman DM, Jiao C, Xu Y, Chen K, Fei Z, Giovannoni JJ, Klee HJ.

Proc Natl Acad Sci U S A. 2016 Nov 1;113(44):12580-12585. Epub 2016 Oct 17. Erratum in: Proc Natl Acad Sci U S A. 2016 Nov 21;:.

16.

Fruit carotenoid-deficient mutants in tomato reveal a function of the plastidial isopentenyl diphosphate isomerase (IDI1) in carotenoid biosynthesis.

Pankratov I, McQuinn R, Schwartz J, Bar E, Fei Z, Lewinsohn E, Zamir D, Giovannoni JJ, Hirschberg J.

Plant J. 2016 Oct;88(1):82-94. doi: 10.1111/tpj.13232. Epub 2016 Aug 13.

17.

Gene expression and metabolism preceding soft scald, a chilling injury of 'Honeycrisp' apple fruit.

Leisso RS, Gapper NE, Mattheis JP, Sullivan NL, Watkins CB, Giovannoni JJ, Schaffer RJ, Johnston JW, Hanrahan I, Hertog ML, Nicolaï BM, Rudell DR.

BMC Genomics. 2016 Oct 12;17(1):798.

18.

iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases.

Zheng Y, Jiao C, Sun H, Rosli HG, Pombo MA, Zhang P, Banf M, Dai X, Martin GB, Giovannoni JJ, Zhao PX, Rhee SY, Fei Z.

Mol Plant. 2016 Dec 5;9(12):1667-1670. doi: 10.1016/j.molp.2016.09.014. Epub 2016 Oct 5. No abstract available.

19.

Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.

Yin XR, Xie XL, Xia XJ, Yu JQ, Ferguson IB, Giovannoni JJ, Chen KS.

Plant J. 2016 Jun;86(5):403-12. doi: 10.1111/tpj.13178.

20.

Gr and hp-1 tomato mutants unveil unprecedented interactions between arbuscular mycorrhizal symbiosis and fruit ripening.

Chialva M, Zouari I, Salvioli A, Novero M, Vrebalov J, Giovannoni JJ, Bonfante P.

Planta. 2016 Jul;244(1):155-65. doi: 10.1007/s00425-016-2491-9. Epub 2016 Mar 22.

21.

Banana MaMADS Transcription Factors Are Necessary for Fruit Ripening and Molecular Tools to Promote Shelf-Life and Food Security.

Elitzur T, Yakir E, Quansah L, Zhangjun F, Vrebalov J, Khayat E, Giovannoni JJ, Friedman H.

Plant Physiol. 2016 May;171(1):380-91. doi: 10.1104/pp.15.01866. Epub 2016 Mar 8.

22.

More than meets the eye: from carotenoid biosynthesis, to new insights into apocarotenoid signaling.

McQuinn RP, Giovannoni JJ, Pogson BJ.

Curr Opin Plant Biol. 2015 Oct;27:172-9. doi: 10.1016/j.pbi.2015.06.020. Epub 2015 Aug 21. Review.

PMID:
26302169
23.

A DEMETER-like DNA demethylase governs tomato fruit ripening.

Liu R, How-Kit A, Stammitti L, Teyssier E, Rolin D, Mortain-Bertrand A, Halle S, Liu M, Kong J, Wu C, Degraeve-Guibault C, Chapman NH, Maucourt M, Hodgman TC, Tost J, Bouzayen M, Hong Y, Seymour GB, Giovannoni JJ, Gallusci P.

Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):10804-9. doi: 10.1073/pnas.1503362112. Epub 2015 Aug 10.

24.

Ethylene suppresses tomato (Solanum lycopersicum) fruit set through modification of gibberellin metabolism.

Shinozaki Y, Hao S, Kojima M, Sakakibara H, Ozeki-Iida Y, Zheng Y, Fei Z, Zhong S, Giovannoni JJ, Rose JK, Okabe Y, Heta Y, Ezura H, Ariizumi T.

Plant J. 2015 Jul;83(2):237-51. doi: 10.1111/tpj.12882. Epub 2015 Jun 11.

25.

Nonuniform gene expression pattern detected along the longitudinal axis in the matured rice leaf.

Li N, Chen YR, Ding Z, Li P, Wu Y, Zhang A, Yu S, Giovannoni JJ, Fei Z, Zhang W, Xiang JZ, Xu C, Liu B, Zhong S.

Sci Rep. 2015 Jan 26;5:8015. doi: 10.1038/srep08015.

26.

Transcriptomic events associated with internal browning of apple during postharvest storage.

Mellidou I, Buts K, Hatoum D, Ho QT, Johnston JW, Watkins CB, Schaffer RJ, Gapper NE, Giovannoni JJ, Rudell DR, Hertog ML, Nicolai BM.

BMC Plant Biol. 2014 Nov 28;14:328. doi: 10.1186/s12870-014-0328-x.

27.

Genomic analyses provide insights into the history of tomato breeding.

Lin T, Zhu G, Zhang J, Xu X, Yu Q, Zheng Z, Zhang Z, Lun Y, Li S, Wang X, Huang Z, Li J, Zhang C, Wang T, Zhang Y, Wang A, Zhang Y, Lin K, Li C, Xiong G, Xue Y, Mazzucato A, Causse M, Fei Z, Giovannoni JJ, Chetelat RT, Zamir D, Städler T, Li J, Ye Z, Du Y, Huang S.

Nat Genet. 2014 Nov;46(11):1220-6. doi: 10.1038/ng.3117. Epub 2014 Oct 12.

PMID:
25305757
28.

The genome of the stress-tolerant wild tomato species Solanum pennellii.

Bolger A, Scossa F, Bolger ME, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, Fich EA, Conte M, Keller H, Schneeberger K, Schwacke R, Ofner I, Vrebalov J, Xu Y, Osorio S, Aflitos SA, Schijlen E, Jiménez-Goméz JM, Ryngajllo M, Kimura S, Kumar R, Koenig D, Headland LR, Maloof JN, Sinha N, van Ham RC, Lankhorst RK, Mao L, Vogel A, Arsova B, Panstruga R, Fei Z, Rose JK, Zamir D, Carrari F, Giovannoni JJ, Weigel D, Usadel B, Fernie AR.

Nat Genet. 2014 Sep;46(9):1034-8. doi: 10.1038/ng.3046. Epub 2014 Jul 27.

PMID:
25064008
29.

Fluorescence in situ hybridization and optical mapping to correct scaffold arrangement in the tomato genome.

Shearer LA, Anderson LK, de Jong H, Smit S, Goicoechea JL, Roe BA, Hua A, Giovannoni JJ, Stack SM.

G3 (Bethesda). 2014 May 30;4(8):1395-405. doi: 10.1534/g3.114.011197.

30.

Transcriptomic analysis of Petunia hybrida in response to salt stress using high throughput RNA sequencing.

Villarino GH, Bombarely A, Giovannoni JJ, Scanlon MJ, Mattson NS.

PLoS One. 2014 Apr 10;9(4):e94651. doi: 10.1371/journal.pone.0094651. eCollection 2014. Erratum in: PLoS One. 2014;9(5):e99146.

31.

Tomato GOLDEN2-LIKE transcription factors reveal molecular gradients that function during fruit development and ripening.

Nguyen CV, Vrebalov JT, Gapper NE, Zheng Y, Zhong S, Fei Z, Giovannoni JJ.

Plant Cell. 2014 Feb;26(2):585-601. doi: 10.1105/tpc.113.118794. Epub 2014 Feb 7.

32.

Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species.

Kim S, Park M, Yeom SI, Kim YM, Lee JM, Lee HA, Seo E, Choi J, Cheong K, Kim KT, Jung K, Lee GW, Oh SK, Bae C, Kim SB, Lee HY, Kim SY, Kim MS, Kang BC, Jo YD, Yang HB, Jeong HJ, Kang WH, Kwon JK, Shin C, Lim JY, Park JH, Huh JH, Kim JS, Kim BD, Cohen O, Paran I, Suh MC, Lee SB, Kim YK, Shin Y, Noh SJ, Park J, Seo YS, Kwon SY, Kim HA, Park JM, Kim HJ, Choi SB, Bosland PW, Reeves G, Jo SH, Lee BW, Cho HT, Choi HS, Lee MS, Yu Y, Do Choi Y, Park BS, van Deynze A, Ashrafi H, Hill T, Kim WT, Pai HS, Ahn HK, Yeam I, Giovannoni JJ, Rose JK, Sørensen I, Lee SJ, Kim RW, Choi IY, Choi BS, Lim JS, Lee YH, Choi D.

Nat Genet. 2014 Mar;46(3):270-8. doi: 10.1038/ng.2877. Epub 2014 Jan 19.

PMID:
24441736
33.

Genome-wide data (ChIP-seq) enabled identification of cell wall-related and aquaporin genes as targets of tomato ASR1, a drought stress-responsive transcription factor.

Ricardi MM, González RM, Zhong S, Domínguez PG, Duffy T, Turjanski PG, Salgado Salter JD, Alleva K, Carrari F, Giovannoni JJ, Estévez JM, Iusem ND.

BMC Plant Biol. 2014 Jan 14;14:29. doi: 10.1186/1471-2229-14-29.

34.

Understanding development and ripening of fruit crops in an 'omics' era.

Gapper NE, Giovannoni JJ, Watkins CB.

Hortic Res. 2014 Jul 23;1:14034. doi: 10.1038/hortres.2014.34. eCollection 2014. Review.

35.

Conserved changes in the dynamics of metabolic processes during fruit development and ripening across species.

Klie S, Osorio S, Tohge T, Drincovich MF, Fait A, Giovannoni JJ, Fernie AR, Nikoloski Z.

Plant Physiol. 2014 Jan;164(1):55-68. doi: 10.1104/pp.113.226142. Epub 2013 Nov 15.

36.

Comparative genomics reveals candidate carotenoid pathway regulators of ripening watermelon fruit.

Grassi S, Piro G, Lee JM, Zheng Y, Fei Z, Dalessandro G, Giovannoni JJ, Lenucci MS.

BMC Genomics. 2013 Nov 12;14:781. doi: 10.1186/1471-2164-14-781.

37.

Biomarker development for external CO2 injury prediction in apples through exploration of both transcriptome and DNA methylation changes.

Gapper NE, Rudell DR, Giovannoni JJ, Watkins CB.

AoB Plants. 2013;5:plt021. doi: 10.1093/aobpla/plt021. Epub 2013 May 10.

38.

Molecular and genetic regulation of fruit ripening.

Gapper NE, McQuinn RP, Giovannoni JJ.

Plant Mol Biol. 2013 Aug;82(6):575-91. doi: 10.1007/s11103-013-0050-3. Epub 2013 Apr 13. Review.

PMID:
23585213
39.

Catalyzing plant science research with RNA-seq.

Martin LB, Fei Z, Giovannoni JJ, Rose JK.

Front Plant Sci. 2013 Apr 1;4:66. doi: 10.3389/fpls.2013.00066. eCollection 2013.

40.

Differential regulation of Salmonella typhimurium genes involved in O-antigen capsule production and their role in persistence within tomato fruit.

Marvasi M, Cox CE, Xu Y, Noel JT, Giovannoni JJ, Teplitski M.

Mol Plant Microbe Interact. 2013 Jul;26(7):793-800. doi: 10.1094/MPMI-09-12-0208-R.

41.

Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening.

Zhong S, Fei Z, Chen YR, Zheng Y, Huang M, Vrebalov J, McQuinn R, Gapper N, Liu B, Xiang J, Shao Y, Giovannoni JJ.

Nat Biotechnol. 2013 Feb;31(2):154-9. doi: 10.1038/nbt.2462. Epub 2013 Jan 27.

PMID:
23354102
42.

The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions.

Guo S, Zhang J, Sun H, Salse J, Lucas WJ, Zhang H, Zheng Y, Mao L, Ren Y, Wang Z, Min J, Guo X, Murat F, Ham BK, Zhang Z, Gao S, Huang M, Xu Y, Zhong S, Bombarely A, Mueller LA, Zhao H, He H, Zhang Y, Zhang Z, Huang S, Tan T, Pang E, Lin K, Hu Q, Kuang H, Ni P, Wang B, Liu J, Kou Q, Hou W, Zou X, Jiang J, Gong G, Klee K, Schoof H, Huang Y, Hu X, Dong S, Liang D, Wang J, Wu K, Xia Y, Zhao X, Zheng Z, Xing M, Liang X, Huang B, Lv T, Wang J, Yin Y, Yi H, Li R, Wu M, Levi A, Zhang X, Giovannoni JJ, Wang J, Li Y, Fei Z, Xu Y.

Nat Genet. 2013 Jan;45(1):51-8. doi: 10.1038/ng.2470. Epub 2012 Nov 25.

PMID:
23179023
43.

Virus-induced gene complementation reveals a transcription factor network in modulation of tomato fruit ripening.

Zhou T, Zhang H, Lai T, Qin C, Shi N, Wang H, Jin M, Zhong S, Fan Z, Liu Y, Wu Z, Jackson S, Giovannoni JJ, Rolin D, Gallusci P, Hong Y.

Sci Rep. 2012;2:836. doi: 10.1038/srep00836. Epub 2012 Nov 12.

44.

Tissue specificity and differential expression of transcription factors in tomato provide hints of unique regulatory networks during fruit ripening.

Rohrmann J, McQuinn R, Giovannoni JJ, Fernie AR, Tohge T.

Plant Signal Behav. 2012 Dec;7(12):1639-47. doi: 10.4161/psb.22264. Epub 2012 Oct 16.

45.

Differential control of ethylene responses by GREEN-RIPE and GREEN-RIPE LIKE1 provides evidence for distinct ethylene signaling modules in tomato.

Ma Q, Du W, Brandizzi F, Giovannoni JJ, Barry CS.

Plant Physiol. 2012 Dec;160(4):1968-84. doi: 10.1104/pp.112.205476. Epub 2012 Oct 5.

46.

Uniform ripening encodes a Golden 2-like transcription factor regulating tomato fruit chloroplast development.

Powell AL, Nguyen CV, Hill T, Cheng KL, Figueroa-Balderas R, Aktas H, Ashrafi H, Pons C, Fernández-Muñoz R, Vicente A, Lopez-Baltazar J, Barry CS, Liu Y, Chetelat R, Granell A, Van Deynze A, Giovannoni JJ, Bennett AB.

Science. 2012 Jun 29;336(6089):1711-5. doi: 10.1126/science.1222218.

47.

Integrative comparative analyses of transcript and metabolite profiles from pepper and tomato ripening and development stages uncovers species-specific patterns of network regulatory behavior.

Osorio S, Alba R, Nikoloski Z, Kochevenko A, Fernie AR, Giovannoni JJ.

Plant Physiol. 2012 Aug;159(4):1713-29. doi: 10.1104/pp.112.199711. Epub 2012 Jun 8.

48.

Altered chloroplast development and delayed fruit ripening caused by mutations in a zinc metalloprotease at the lutescent2 locus of tomato.

Barry CS, Aldridge GM, Herzog G, Ma Q, McQuinn RP, Hirschberg J, Giovannoni JJ.

Plant Physiol. 2012 Jul;159(3):1086-98. doi: 10.1104/pp.112.197483. Epub 2012 May 22.

49.

Enabling proteomic studies with RNA-Seq: The proteome of tomato pollen as a test case.

Lopez-Casado G, Covey PA, Bedinger PA, Mueller LA, Thannhauser TW, Zhang S, Fei Z, Giovannoni JJ, Rose JK.

Proteomics. 2012 Mar;12(6):761-74. doi: 10.1002/pmic.201100164.

PMID:
22539427
50.

Genetics and control of tomato fruit ripening and quality attributes.

Klee HJ, Giovannoni JJ.

Annu Rev Genet. 2011;45:41-59. doi: 10.1146/annurev-genet-110410-132507. Review.

PMID:
22060040

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