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Items: 1 to 50 of 159

1.

Genetic and metabolic effects of ripening mutations and vine detachment on tomato fruit quality.

Osorio S, Carneiro RT, Lytovchenko A, McQuinn R, Sørensen I, Vallarino JG, Giovannoni JJ, Fernie AR, Rose JKC.

Plant Biotechnol J. 2019 May 26. doi: 10.1111/pbi.13176. [Epub ahead of print]

2.

The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor.

Gao L, Gonda I, Sun H, Ma Q, Bao K, Tieman DM, Burzynski-Chang EA, Fish TL, Stromberg KA, Sacks GL, Thannhauser TW, Foolad MR, Diez MJ, Blanca J, Canizares J, Xu Y, van der Knaap E, Huang S, Klee HJ, Giovannoni JJ, Fei Z.

Nat Genet. 2019 Jun;51(6):1044-1051. doi: 10.1038/s41588-019-0410-2. Epub 2019 May 13.

PMID:
31086351
3.

Genome-wide association analysis identifies a natural variation in basic helix-loop-helix transcription factor regulating ascorbate biosynthesis via D-mannose/L-galactose pathway in tomato.

Ye J, Li W, Ai G, Li C, Liu G, Chen W, Wang B, Wang W, Lu Y, Zhang J, Li H, Ouyang B, Zhang H, Fei Z, Giovannoni JJ, Ye Z, Zhang Y.

PLoS Genet. 2019 May 8;15(5):e1008149. doi: 10.1371/journal.pgen.1008149. eCollection 2019 May.

4.

Sequencing-Based Bin Map Construction of a Tomato Mapping Population, Facilitating High-Resolution Quantitative Trait Loci Detection.

Gonda I, Ashrafi H, Lyon DA, Strickler SR, Hulse-Kemp AM, Ma Q, Sun H, Stoffel K, Powell AF, Futrell S, Thannhauser TW, Fei Z, Van Deynze AE, Mueller LA, Giovannoni JJ, Foolad MR.

Plant Genome. 2019 Mar;12(1). doi: 10.3835/plantgenome2018.02.0010.

5.

The Ptr1 Locus of Solanum lycopersicoides Confers Resistance to Race 1 Strains of Pseudomonas syringae pv. tomato and to Ralstonia pseudosolanacearum by Recognizing the Type III Effectors AvrRpt2 and RipBN.

Mazo-Molina C, Mainiero S, Hind SR, Kraus CM, Vachev M, Maviane-Macia F, Lindeberg M, Saha S, Strickler SR, Feder A, Giovannoni JJ, Smart CD, Peeters N, Martin GB.

Mol Plant Microbe Interact. 2019 Jun 12:MPMI01190018R. doi: 10.1094/MPMI-01-19-0018-R. [Epub ahead of print]

PMID:
30785360
6.

The tomato HIGH PIGMENT1/DAMAGED DNA BINDING PROTEIN 1 gene contributes to regulation of fruit ripening.

Wang A, Chen D, Ma Q, Rose JKC, Fei Z, Liu Y, Giovannoni JJ.

Hortic Res. 2019 Feb 1;6:15. doi: 10.1038/s41438-018-0093-3. eCollection 2019.

7.

MaMADS2 repression in banana fruits modifies hormone synthesis and signalling pathways prior to climacteric stage.

Yakir E, Zhangjun F, Sela N, Xu Y, Singh V, Dagar A, Joshi JR, Müller M, Munné-Bosch S, Giovannoni JJ, Vrebalov J, Friedman H.

BMC Plant Biol. 2018 Nov 6;18(1):267. doi: 10.1186/s12870-018-1480-5.

8.

Cucurbit Genomics Database (CuGenDB): a central portal for comparative and functional genomics of cucurbit crops.

Zheng Y, Wu S, Bai Y, Sun H, Jiao C, Guo S, Zhao K, Blanca J, Zhang Z, Huang S, Xu Y, Weng Y, Mazourek M, K Reddy U, Ando K, McCreight JD, Schaffer AA, Burger J, Tadmor Y, Katzir N, Tang X, Liu Y, Giovannoni JJ, Ling KS, Wechter WP, Levi A, Garcia-Mas J, Grumet R, Fei Z.

Nucleic Acids Res. 2019 Jan 8;47(D1):D1128-D1136. doi: 10.1093/nar/gky944.

9.

Genome encode analyses reveal the basis of convergent evolution of fleshy fruit ripening.

Lü P, Yu S, Zhu N, Chen YR, Zhou B, Pan Y, Tzeng D, Fabi JP, Argyris J, Garcia-Mas J, Ye N, Zhang J, Grierson D, Xiang J, Fei Z, Giovannoni J, Zhong S.

Nat Plants. 2018 Oct;4(10):784-791. doi: 10.1038/s41477-018-0249-z. Epub 2018 Sep 24.

PMID:
30250279
10.

HS-SPME-GC-MS Analyses of Volatiles in Plant Populations-Quantitating Compound × Individual Matrix Effects.

Burzynski-Chang EA, Ryona I, Reisch BI, Gonda I, Foolad MR, Giovannoni JJ, Sacks GL.

Molecules. 2018 Sep 23;23(10). pii: E2436. doi: 10.3390/molecules23102436.

11.

Natural genetic variation for expression of a SWEET transporter among wild species of Solanum lycopersicum (tomato) determines the hexose composition of ripening tomato fruit.

Shammai A, Petreikov M, Yeselson Y, Faigenboim A, Moy-Komemi M, Cohen S, Cohen D, Besaulov E, Efrati A, Houminer N, Bar M, Ast T, Schuldiner M, Klemens PAW, Neuhaus E, Baxter CJ, Rickett D, Bonnet J, White R, Giovannoni JJ, Levin I, Schaffer A.

Plant J. 2018 Oct;96(2):343-357. doi: 10.1111/tpj.14035. Epub 2018 Sep 1.

PMID:
30044900
12.

Genetic mapping identifies loci that influence tomato resistance against Colorado potato beetles.

Vargas-Ortiz E, Gonda I, Smeda JR, Mutschler MA, Giovannoni JJ, Jander G.

Sci Rep. 2018 May 9;8(1):7429. doi: 10.1038/s41598-018-24998-5.

13.

Ectopic expression of ORANGE promotes carotenoid accumulation and fruit development in tomato.

Yazdani M, Sun Z, Yuan H, Zeng S, Thannhauser TW, Vrebalov J, Ma Q, Xu Y, Fei Z, Van Eck J, Tian S, Tadmor Y, Giovannoni JJ, Li L.

Plant Biotechnol J. 2019 Jan;17(1):33-49. doi: 10.1111/pbi.12945. Epub 2018 May 31.

14.

Differential metabolism of L-phenylalanine in the formation of aromatic volatiles in melon (Cucumis melo L.) fruit.

Gonda I, Davidovich-Rikanati R, Bar E, Lev S, Jhirad P, Meshulam Y, Wissotsky G, Portnoy V, Burger J, Schaffer AA, Tadmor Y, Giovannoni JJ, Fei Z, Fait A, Katzir N, Lewinsohn E.

Phytochemistry. 2018 Apr;148:122-131. doi: 10.1016/j.phytochem.2017.12.018. Epub 2018 Feb 20.

PMID:
29448137
15.

Deciphering genetic factors that determine melon fruit-quality traits using RNA-Seq-based high-resolution QTL and eQTL mapping.

Galpaz N, Gonda I, Shem-Tov D, Barad O, Tzuri G, Lev S, Fei Z, Xu Y, Mao L, Jiao C, Harel-Beja R, Doron-Faigenboim A, Tzfadia O, Bar E, Meir A, Sa'ar U, Fait A, Halperin E, Kenigswald M, Fallik E, Lombardi N, Kol G, Ronen G, Burger Y, Gur A, Tadmor Y, Portnoy V, Schaffer AA, Lewinsohn E, Giovannoni JJ, Katzir N.

Plant J. 2018 Apr;94(1):169-191. doi: 10.1111/tpj.13838.

16.

High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening.

Shinozaki Y, Nicolas P, Fernandez-Pozo N, Ma Q, Evanich DJ, Shi Y, Xu Y, Zheng Y, Snyder SI, Martin LBB, Ruiz-May E, Thannhauser TW, Chen K, Domozych DS, Catalá C, Fei Z, Mueller LA, Giovannoni JJ, Rose JKC.

Nat Commun. 2018 Jan 25;9(1):364. doi: 10.1038/s41467-017-02782-9.

17.

Tomato Multiomics Reveals Consequences of Crop Domestication and Improvement.

Giovannoni J.

Cell. 2018 Jan 11;172(1-2):6-8. doi: 10.1016/j.cell.2017.12.036.

18.

Caring Science or Science of Caring.

Turkel MC, Watson J, Giovannoni J.

Nurs Sci Q. 2018 Jan;31(1):66-71. doi: 10.1177/0894318417741116.

PMID:
29235958
19.

Ripening activator turned repressor.

Giovannoni J.

Nat Plants. 2017 Dec;3(12):920-921. doi: 10.1038/s41477-017-0062-0. No abstract available.

PMID:
29133904
20.

Overexpression of the class D MADS-box gene Sl-AGL11 impacts fleshy tissue differentiation and structure in tomato fruits.

Huang B, Routaboul JM, Liu M, Deng W, Maza E, Mila I, Hu G, Zouine M, Frasse P, Vrebalov JT, Giovannoni JJ, Li Z, van der Rest B, Bouzayen M.

J Exp Bot. 2017 Oct 13;68(17):4869-4884. doi: 10.1093/jxb/erx303.

PMID:
28992179
21.

An InDel in the Promoter of Al-ACTIVATED MALATE TRANSPORTER9 Selected during Tomato Domestication Determines Fruit Malate Contents and Aluminum Tolerance.

Ye J, Wang X, Hu T, Zhang F, Wang B, Li C, Yang T, Li H, Lu Y, Giovannoni JJ, Zhang Y, Ye Z.

Plant Cell. 2017 Sep;29(9):2249-2268. doi: 10.1105/tpc.17.00211. Epub 2017 Aug 16.

22.

Transient regulation of three clustered tomato class-I small heat-shock chaperone genes by ethylene is mediated by SlMADS-RIN transcription factor.

Shukla V, Upadhyay RK, Tucker ML, Giovannoni JJ, Rudrabhatla SV, Mattoo AK.

Sci Rep. 2017 Jul 25;7(1):6474. doi: 10.1038/s41598-017-06622-0.

23.

AtPDS overexpression in tomato: exposing unique patterns of carotenoid self-regulation and an alternative strategy for the enhancement of fruit carotenoid content.

McQuinn RP, Wong B, Giovannoni JJ.

Plant Biotechnol J. 2018 Feb;16(2):482-494. doi: 10.1111/pbi.12789. Epub 2017 Sep 11.

24.

Metabolomic analyses to evaluate the effect of drought stress on selected African Eggplant accessions.

Mibei EK, Owino WO, Ambuko J, Giovannoni JJ, Onyango AN.

J Sci Food Agric. 2018 Jan;98(1):205-216. doi: 10.1002/jsfa.8458. Epub 2017 Aug 3.

PMID:
28573744
25.

Delayed response to cold stress is characterized by successive metabolic shifts culminating in apple fruit peel necrosis.

Gapper NE, Hertog MLATM, Lee J, Buchanan DA, Leisso RS, Fei Z, Qu G, Giovannoni JJ, Johnston JW, Schaffer RJ, Nicolaï BM, Mattheis JP, Watkins CB, Rudell DR.

BMC Plant Biol. 2017 Apr 21;17(1):77. doi: 10.1186/s12870-017-1030-6.

26.

The Tomato Expression Atlas.

Fernandez-Pozo N, Zheng Y, Snyder SI, Nicolas P, Shinozaki Y, Fei Z, Catala C, Giovannoni JJ, Rose JKC, Mueller LA.

Bioinformatics. 2017 Aug 1;33(15):2397-2398. doi: 10.1093/bioinformatics/btx190.

27.

The Epigenome and Transcriptional Dynamics of Fruit Ripening.

Giovannoni J, Nguyen C, Ampofo B, Zhong S, Fei Z.

Annu Rev Plant Biol. 2017 Apr 28;68:61-84. doi: 10.1146/annurev-arplant-042916-040906. Epub 2017 Feb 22. Review.

PMID:
28226232
28.

Carotenoid profiling of the leaves of selected African eggplant accessions subjected to drought stress.

Mibei EK, Ambuko J, Giovannoni JJ, Onyango AN, Owino WO.

Food Sci Nutr. 2016 Apr 18;5(1):113-122. doi: 10.1002/fsn3.370. eCollection 2017 Jan.

29.

Identification of a Solanum pennellii Chromosome 4 Fruit Flavor and Nutritional Quality-Associated Metabolite QTL.

Liu Z, Alseekh S, Brotman Y, Zheng Y, Fei Z, Tieman DM, Giovannoni JJ, Fernie AR, Klee HJ.

Front Plant Sci. 2016 Nov 9;7:1671. eCollection 2016.

30.

Chilling-induced tomato flavor loss is associated with altered volatile synthesis and transient changes in DNA methylation.

Zhang B, Tieman DM, Jiao C, Xu Y, Chen K, Fei Z, Giovannoni JJ, Klee HJ.

Proc Natl Acad Sci U S A. 2016 Nov 1;113(44):12580-12585. Epub 2016 Oct 17. Erratum in: Proc Natl Acad Sci U S A. 2016 Nov 21;:.

31.

Fruit carotenoid-deficient mutants in tomato reveal a function of the plastidial isopentenyl diphosphate isomerase (IDI1) in carotenoid biosynthesis.

Pankratov I, McQuinn R, Schwartz J, Bar E, Fei Z, Lewinsohn E, Zamir D, Giovannoni JJ, Hirschberg J.

Plant J. 2016 Oct;88(1):82-94. doi: 10.1111/tpj.13232. Epub 2016 Aug 13.

32.

Gene expression and metabolism preceding soft scald, a chilling injury of 'Honeycrisp' apple fruit.

Leisso RS, Gapper NE, Mattheis JP, Sullivan NL, Watkins CB, Giovannoni JJ, Schaffer RJ, Johnston JW, Hanrahan I, Hertog ML, Nicolaï BM, Rudell DR.

BMC Genomics. 2016 Oct 12;17(1):798.

33.

iTAK: A Program for Genome-wide Prediction and Classification of Plant Transcription Factors, Transcriptional Regulators, and Protein Kinases.

Zheng Y, Jiao C, Sun H, Rosli HG, Pombo MA, Zhang P, Banf M, Dai X, Martin GB, Giovannoni JJ, Zhao PX, Rhee SY, Fei Z.

Mol Plant. 2016 Dec 5;9(12):1667-1670. doi: 10.1016/j.molp.2016.09.014. Epub 2016 Oct 5. No abstract available.

34.

Harnessing epigenome modifications for better crops.

Giovannoni J.

J Exp Bot. 2016 Apr;67(9):2535-7. doi: 10.1093/jxb/erw143. No abstract available.

35.

Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.

Yin XR, Xie XL, Xia XJ, Yu JQ, Ferguson IB, Giovannoni JJ, Chen KS.

Plant J. 2016 Jun;86(5):403-12. doi: 10.1111/tpj.13178.

36.

Gr and hp-1 tomato mutants unveil unprecedented interactions between arbuscular mycorrhizal symbiosis and fruit ripening.

Chialva M, Zouari I, Salvioli A, Novero M, Vrebalov J, Giovannoni JJ, Bonfante P.

Planta. 2016 Jul;244(1):155-65. doi: 10.1007/s00425-016-2491-9. Epub 2016 Mar 22.

37.

Banana MaMADS Transcription Factors Are Necessary for Fruit Ripening and Molecular Tools to Promote Shelf-Life and Food Security.

Elitzur T, Yakir E, Quansah L, Zhangjun F, Vrebalov J, Khayat E, Giovannoni JJ, Friedman H.

Plant Physiol. 2016 May;171(1):380-91. doi: 10.1104/pp.15.01866. Epub 2016 Mar 8.

38.

Ubiquitin-conjugated degradation of golden 2-like transcription factor is mediated by CUL4-DDB1-based E3 ligase complex in tomato.

Tang X, Miao M, Niu X, Zhang D, Cao X, Jin X, Zhu Y, Fan Y, Wang H, Liu Y, Sui Y, Wang W, Wang A, Xiao F, Giovannoni J, Liu Y.

New Phytol. 2016 Feb;209(3):1028-39. doi: 10.1111/nph.13635. Epub 2015 Sep 9.

39.

More than meets the eye: from carotenoid biosynthesis, to new insights into apocarotenoid signaling.

McQuinn RP, Giovannoni JJ, Pogson BJ.

Curr Opin Plant Biol. 2015 Oct;27:172-9. doi: 10.1016/j.pbi.2015.06.020. Epub 2015 Aug 21. Review.

PMID:
26302169
40.

A DEMETER-like DNA demethylase governs tomato fruit ripening.

Liu R, How-Kit A, Stammitti L, Teyssier E, Rolin D, Mortain-Bertrand A, Halle S, Liu M, Kong J, Wu C, Degraeve-Guibault C, Chapman NH, Maucourt M, Hodgman TC, Tost J, Bouzayen M, Hong Y, Seymour GB, Giovannoni JJ, Gallusci P.

Proc Natl Acad Sci U S A. 2015 Aug 25;112(34):10804-9. doi: 10.1073/pnas.1503362112. Epub 2015 Aug 10.

41.

Ethylene suppresses tomato (Solanum lycopersicum) fruit set through modification of gibberellin metabolism.

Shinozaki Y, Hao S, Kojima M, Sakakibara H, Ozeki-Iida Y, Zheng Y, Fei Z, Zhong S, Giovannoni JJ, Rose JK, Okabe Y, Heta Y, Ezura H, Ariizumi T.

Plant J. 2015 Jul;83(2):237-51. doi: 10.1111/tpj.12882. Epub 2015 Jun 11.

42.

Systems approach for exploring the intricate associations between sweetness, color and aroma in melon fruits.

Freilich S, Lev S, Gonda I, Reuveni E, Portnoy V, Oren E, Lohse M, Galpaz N, Bar E, Tzuri G, Wissotsky G, Meir A, Burger J, Tadmor Y, Schaffer A, Fei Z, Giovannoni J, Lewinsohn E, Katzir N.

BMC Plant Biol. 2015 Mar 3;15:71. doi: 10.1186/s12870-015-0449-x.

43.

Nonuniform gene expression pattern detected along the longitudinal axis in the matured rice leaf.

Li N, Chen YR, Ding Z, Li P, Wu Y, Zhang A, Yu S, Giovannoni JJ, Fei Z, Zhang W, Xiang JZ, Xu C, Liu B, Zhong S.

Sci Rep. 2015 Jan 26;5:8015. doi: 10.1038/srep08015.

44.

Transcriptomic events associated with internal browning of apple during postharvest storage.

Mellidou I, Buts K, Hatoum D, Ho QT, Johnston JW, Watkins CB, Schaffer RJ, Gapper NE, Giovannoni JJ, Rudell DR, Hertog ML, Nicolai BM.

BMC Plant Biol. 2014 Nov 28;14:328. doi: 10.1186/s12870-014-0328-x.

45.

Genomic analyses provide insights into the history of tomato breeding.

Lin T, Zhu G, Zhang J, Xu X, Yu Q, Zheng Z, Zhang Z, Lun Y, Li S, Wang X, Huang Z, Li J, Zhang C, Wang T, Zhang Y, Wang A, Zhang Y, Lin K, Li C, Xiong G, Xue Y, Mazzucato A, Causse M, Fei Z, Giovannoni JJ, Chetelat RT, Zamir D, Städler T, Li J, Ye Z, Du Y, Huang S.

Nat Genet. 2014 Nov;46(11):1220-6. doi: 10.1038/ng.3117. Epub 2014 Oct 12.

PMID:
25305757
46.

The pineapple AcMADS1 promoter confers high level expression in tomato and Arabidopsis flowering and fruiting tissues, but AcMADS1 does not complement the tomato LeMADS-RIN (rin) mutant.

Moyle RL, Koia JH, Vrebalov J, Giovannoni J, Botella JR.

Plant Mol Biol. 2014 Nov;86(4-5):395-407. doi: 10.1007/s11103-014-0236-3. Epub 2014 Aug 20.

PMID:
25139231
47.

The genome of the stress-tolerant wild tomato species Solanum pennellii.

Bolger A, Scossa F, Bolger ME, Lanz C, Maumus F, Tohge T, Quesneville H, Alseekh S, Sørensen I, Lichtenstein G, Fich EA, Conte M, Keller H, Schneeberger K, Schwacke R, Ofner I, Vrebalov J, Xu Y, Osorio S, Aflitos SA, Schijlen E, Jiménez-Goméz JM, Ryngajllo M, Kimura S, Kumar R, Koenig D, Headland LR, Maloof JN, Sinha N, van Ham RC, Lankhorst RK, Mao L, Vogel A, Arsova B, Panstruga R, Fei Z, Rose JK, Zamir D, Carrari F, Giovannoni JJ, Weigel D, Usadel B, Fernie AR.

Nat Genet. 2014 Sep;46(9):1034-8. doi: 10.1038/ng.3046. Epub 2014 Jul 27.

PMID:
25064008
48.

The PH gene determines fruit acidity and contributes to the evolution of sweet melons.

Cohen S, Itkin M, Yeselson Y, Tzuri G, Portnoy V, Harel-Baja R, Lev S, Sa'ar U, Davidovitz-Rikanati R, Baranes N, Bar E, Wolf D, Petreikov M, Shen S, Ben-Dor S, Rogachev I, Aharoni A, Ast T, Schuldiner M, Belausov E, Eshed R, Ophir R, Sherman A, Frei B, Neuhaus HE, Xu Y, Fei Z, Giovannoni J, Lewinsohn E, Tadmor Y, Paris HS, Katzir N, Burger Y, Schaffer AA.

Nat Commun. 2014 Jun 5;5:4026. doi: 10.1038/ncomms5026.

PMID:
24898284
49.

Fluorescence in situ hybridization and optical mapping to correct scaffold arrangement in the tomato genome.

Shearer LA, Anderson LK, de Jong H, Smit S, Goicoechea JL, Roe BA, Hua A, Giovannoni JJ, Stack SM.

G3 (Bethesda). 2014 May 30;4(8):1395-405. doi: 10.1534/g3.114.011197.

50.

Transcriptomic analysis of Petunia hybrida in response to salt stress using high throughput RNA sequencing.

Villarino GH, Bombarely A, Giovannoni JJ, Scanlon MJ, Mattson NS.

PLoS One. 2014 Apr 10;9(4):e94651. doi: 10.1371/journal.pone.0094651. eCollection 2014. Erratum in: PLoS One. 2014;9(5):e99146.

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