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Items: 1 to 50 of 63

1.

Coarse Graining of a Giant Molecular System: The Chromatin Fiber.

Tiana G, Giorgetti L.

Methods Mol Biol. 2019;2022:399-411. doi: 10.1007/978-1-4939-9608-7_17.

PMID:
31396913
2.

The bipartite TAD organization of the X-inactivation center ensures opposing developmental regulation of Tsix and Xist.

van Bemmel JG, Galupa R, Gard C, Servant N, Picard C, Davies J, Szempruch AJ, Zhan Y, Żylicz JJ, Nora EP, Lameiras S, de Wit E, Gentien D, Baulande S, Giorgetti L, Guttman M, Hughes JR, Higgs DR, Gribnau J, Heard E.

Nat Genet. 2019 Jun;51(6):1024-1034. doi: 10.1038/s41588-019-0412-0. Epub 2019 May 27.

PMID:
31133748
3.

DamC reveals principles of chromatin folding in vivo without crosslinking and ligation.

Redolfi J, Zhan Y, Valdes-Quezada C, Kryzhanovska M, Guerreiro I, Iesmantavicius V, Pollex T, Grand RS, Mulugeta E, Kind J, Tiana G, Smallwood SA, de Laat W, Giorgetti L.

Nat Struct Mol Biol. 2019 Jun;26(6):471-480. doi: 10.1038/s41594-019-0231-0. Epub 2019 May 27.

PMID:
31133702
4.

Drought stress modulates secondary metabolites in Brassica oleracea L. convar. acephala (DC) Alef, var. sabellica L.

Podda A, Pollastri S, Bartolini P, Pisuttu C, Pellegrini E, Nali C, Cencetti G, Michelozzi M, Frassinetti S, Giorgetti L, Fineschi S, Del Carratore R, Maserti B.

J Sci Food Agric. 2019 Sep;99(12):5533-5540. doi: 10.1002/jsfa.9816. Epub 2019 Jul 2.

PMID:
31106430
5.

A symmetric toggle switch explains the onset of random X inactivation in different mammals.

Mutzel V, Okamoto I, Dunkel I, Saitou M, Giorgetti L, Heard E, Schulz EG.

Nat Struct Mol Biol. 2019 May;26(5):350-360. doi: 10.1038/s41594-019-0214-1. Epub 2019 Apr 8.

PMID:
30962582
6.

An integrated approach to highlight biological responses of Pisum sativum root to nano-TiO2 exposure in a biosolid-amended agricultural soil.

Giorgetti L, Spanò C, Muccifora S, Bellani L, Tassi E, Bottega S, Di Gregorio S, Siracusa G, Sanità di Toppi L, Ruffini Castiglione M.

Sci Total Environ. 2019 Feb 10;650(Pt 2):2705-2716. doi: 10.1016/j.scitotenv.2018.10.032. Epub 2018 Oct 3.

PMID:
30373051
7.

Challenges and guidelines toward 4D nucleome data and model standards.

Marti-Renom MA, Almouzni G, Bickmore WA, Bystricky K, Cavalli G, Fraser P, Gasser SM, Giorgetti L, Heard E, Nicodemi M, Nollmann M, Orozco M, Pombo A, Torres-Padilla ME.

Nat Genet. 2018 Oct;50(10):1352-1358. doi: 10.1038/s41588-018-0236-3. Epub 2018 Sep 27. Review.

PMID:
30262815
8.

Nutraceutical potential of hemp (Cannabis sativa L.) seeds and sprouts.

Frassinetti S, Moccia E, Caltavuturo L, Gabriele M, Longo V, Bellani L, Giorgi G, Giorgetti L.

Food Chem. 2018 Oct 1;262:56-66. doi: 10.1016/j.foodchem.2018.04.078. Epub 2018 Apr 22.

PMID:
29751921
9.

Polyphenolic characterisation of plant mixture (Lisosan® Reduction) and its hypocholesterolaemic effect in high fat diet-fed mice.

Russo R, Pucci L, Giorgetti L, Árvay J, Vizzarri F, Longo V, Pozzo L.

Nat Prod Res. 2019 Mar;33(5):651-658. doi: 10.1080/14786419.2017.1402328. Epub 2017 Nov 15.

PMID:
29139309
10.

Integrating experiment, theory and simulation to determine the structure and dynamics of mammalian chromosomes.

Tiana G, Giorgetti L.

Curr Opin Struct Biol. 2018 Apr;49:11-17. doi: 10.1016/j.sbi.2017.10.016. Epub 2017 Nov 9. Review.

11.

Screening and identification of major phytochemical compounds in seeds, sprouts and leaves of Tuscan black kale Brassica oleracea (L.) ssp acephala (DC) var. sabellica L.

Giorgetti L, Giorgi G, Cherubini E, Gervasi PG, Della Croce CM, Longo V, Bellani L.

Nat Prod Res. 2018 Jul;32(14):1617-1626. doi: 10.1080/14786419.2017.1392953. Epub 2017 Oct 23.

PMID:
29058468
12.

The Dynamics of mRNA Turnover Revealed by Single-Molecule Imaging in Single Cells.

Horvathova I, Voigt F, Kotrys AV, Zhan Y, Artus-Revel CG, Eglinger J, Stadler MB, Giorgetti L, Chao JA.

Mol Cell. 2017 Nov 2;68(3):615-625.e9. doi: 10.1016/j.molcel.2017.09.030. Epub 2017 Oct 19.

13.

Analysis of extracellular vesicles produced in the biofilm by the dimorphic yeast Pichia fermentans.

Leone F, Bellani L, Muccifora S, Giorgetti L, Bongioanni P, Simili M, Maserti B, Del Carratore R.

J Cell Physiol. 2018 Apr;233(4):2759-2767. doi: 10.1002/jcp.25885. Epub 2017 May 16.

PMID:
28256706
14.

Modelling genome-wide topological associating domains in mouse embryonic stem cells.

Zhan Y, Giorgetti L, Tiana G.

Chromosome Res. 2017 Mar;25(1):5-14. doi: 10.1007/s10577-016-9544-6. Epub 2017 Jan 20.

15.

Reciprocal insulation analysis of Hi-C data shows that TADs represent a functionally but not structurally privileged scale in the hierarchical folding of chromosomes.

Zhan Y, Mariani L, Barozzi I, Schulz EG, Blüthgen N, Stadler M, Tiana G, Giorgetti L.

Genome Res. 2017 Mar;27(3):479-490. doi: 10.1101/gr.212803.116. Epub 2017 Jan 5.

16.

Closing the loop: 3C versus DNA FISH.

Giorgetti L, Heard E.

Genome Biol. 2016 Oct 19;17(1):215. Review.

17.

Looping probability of random heteropolymers helps to understand the scaling properties of biopolymers.

Zhan Y, Giorgetti L, Tiana G.

Phys Rev E. 2016 Sep;94(3-1):032402. Epub 2016 Sep 2.

PMID:
27739813
18.

Effect of HFD/STZ on expression of genes involved in lipid, cholesterol and glucose metabolism in rats.

Pozzo L, Vornoli A, Coppola I, Croce CM, Giorgetti L, Gervasi PG, Longo V.

Life Sci. 2016 Dec 1;166:149-156. doi: 10.1016/j.lfs.2016.09.022. Epub 2016 Sep 28.

PMID:
27693527
19.

Physiological and biochemical responses of sunflower (Helianthus annuus L.) exposed to nano-CeO2 and excess boron: Modulation of boron phytotoxicity.

Tassi E, Giorgetti L, Morelli E, Peralta-Videa JR, Gardea-Torresdey JL, Barbafieri M.

Plant Physiol Biochem. 2017 Jan;110:50-58. doi: 10.1016/j.plaphy.2016.09.013. Epub 2016 Sep 18.

PMID:
27665987
20.

Contaminant bioavailability in soil and phytotoxicity/genotoxicity tests in Vicia faba L.: a case study of boron contamination.

Barbafieri M, Giorgetti L.

Environ Sci Pollut Res Int. 2016 Dec;23(23):24327-24336. Epub 2016 Sep 21.

PMID:
27655615
21.

Structural organization of the inactive X chromosome in the mouse.

Giorgetti L, Lajoie BR, Carter AC, Attia M, Zhan Y, Xu J, Chen CJ, Kaplan N, Chang HY, Heard E, Dekker J.

Nature. 2016 Jul 28;535(7613):575-9. Epub 2016 Jul 18.

22.

Structural Fluctuations of the Chromatin Fiber within Topologically Associating Domains.

Tiana G, Amitai A, Pollex T, Piolot T, Holcman D, Heard E, Giorgetti L.

Biophys J. 2016 Mar 29;110(6):1234-45. doi: 10.1016/j.bpj.2016.02.003.

23.

Ecotoxicity of halloysite nanotube-supported palladium nanoparticles in Raphanus sativus L.

Bellani L, Giorgetti L, Riela S, Lazzara G, Scialabba A, Massaro M.

Environ Toxicol Chem. 2016 Oct;35(10):2503-2510. doi: 10.1002/etc.3412. Epub 2016 Jun 17.

PMID:
26918843
24.

Polycyclic aromatic hydrocarbon-contaminated soils: bioaugmentation of autochthonous bacteria and toxicological assessment of the bioremediation process by means of Vicia faba L.

Ruffini Castiglione M, Giorgetti L, Becarelli S, Siracusa G, Lorenzi R, Di Gregorio S.

Environ Sci Pollut Res Int. 2016 Apr;23(8):7930-41. doi: 10.1007/s11356-016-6049-y. Epub 2016 Jan 15.

PMID:
26769476
25.

Molecular aspects of zygotic embryogenesis in sunflower (Helianthus annuus L.): correlation of positive histone marks with HaWUS expression and putative link HaWUS/HaL1L.

Salvini M, Fambrini M, Giorgetti L, Pugliesi C.

Planta. 2016 Jan;243(1):199-215. doi: 10.1007/s00425-015-2405-2. Epub 2015 Sep 16.

PMID:
26377219
26.

Proteome changes during yeast-like and pseudohyphal growth in the biofilm-forming yeast Pichia fermentans.

Maserti B, Podda A, Giorgetti L, Del Carratore R, Chevret D, Migheli Q.

Amino Acids. 2015 Jun;47(6):1091-106. doi: 10.1007/s00726-015-1933-1. Epub 2015 Mar 6.

PMID:
25743163
27.

High-resolution 3D DNA FISH using plasmid probes and computational correction of optical aberrations to study chromatin structure at the sub-megabase scale.

Giorgetti L, Piolot T, Heard E.

Methods Mol Biol. 2015;1262:37-53. doi: 10.1007/978-1-4939-2253-6_3.

PMID:
25555574
28.

Effect of white wheat bread and white wheat bread added with bioactive compounds on hypercholesterolemic and steatotic mice fed a high-fat diet.

Pozzo L, Pucci L, Buonamici G, Giorgetti L, Maltinti M, Longo V.

J Sci Food Agric. 2015 Sep;95(12):2454-61. doi: 10.1002/jsfa.6972. Epub 2014 Nov 24.

PMID:
25348650
29.

Soil genotoxicity assessment--results of an interlaboratory study on the Vicia micronucleus assay in the context of ISO standardization.

Cotelle S, Dhyèvre A, Muller S, Chenon P, Manier N, Pandard P, Echairi A, Silvestre J, Guiresse M, Pinelli E, Giorgetti L, Barbafieri M, Silva VC, Engel F, Radetski CM.

Environ Sci Pollut Res Int. 2015 Jan;22(2):988-95. doi: 10.1007/s11356-014-3495-2. Epub 2014 Aug 29.

PMID:
25167825
30.

Response to copper bromide exposure in Vicia sativa L. seeds: analysis of genotoxicity, nucleolar activity and mineral profile.

Bellani LM, Muccifora S, Giorgetti L.

Ecotoxicol Environ Saf. 2014 Sep;107:245-50. doi: 10.1016/j.ecoenv.2014.06.014. Epub 2014 Jul 8.

PMID:
25011121
31.

Independent effects of circulating glucose, insulin and NEFA on cardiac triacylglycerol accumulation and myocardial insulin resistance in a swine model.

Guzzardi MA, Hodson L, Guiducci L, Sanguinetti E, Di Cecco P, Liistro T, Vassalle C, Pardini S, Giorgetti L, Salvadori PA, Burchielli S, Iozzo P.

Diabetologia. 2014 Sep;57(9):1937-46. doi: 10.1007/s00125-014-3307-8. Epub 2014 Jun 25.

PMID:
24962669
32.

Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription.

Giorgetti L, Galupa R, Nora EP, Piolot T, Lam F, Dekker J, Tiana G, Heard E.

Cell. 2014 May 8;157(4):950-63. doi: 10.1016/j.cell.2014.03.025.

33.

Impact of TiO₂ nanoparticles on Vicia narbonensis L.: potential toxicity effects.

Ruffini Castiglione M, Giorgetti L, Cremonini R, Bottega S, Spanò C.

Protoplasma. 2014 Nov;251(6):1471-9. doi: 10.1007/s00709-014-0649-5. Epub 2014 May 3.

PMID:
24793462
34.

Changes in the organization of the genome during the mammalian cell cycle.

Giorgetti L, Servant N, Heard E.

Genome Biol. 2013 Dec 24;14(12):142. doi: 10.1186/gb4147.

35.

Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments.

Seitan VC, Faure AJ, Zhan Y, McCord RP, Lajoie BR, Ing-Simmons E, Lenhard B, Giorgetti L, Heard E, Fisher AG, Flicek P, Dekker J, Merkenschlager M.

Genome Res. 2013 Dec;23(12):2066-77. doi: 10.1101/gr.161620.113. Epub 2013 Sep 3.

36.

Development and in vitro evaluation of coated pellets containing chitosan to potential colonic drug delivery.

Ferrari PC, Souza FM, Giorgetti L, Oliveira GF, Ferraz HG, Chaud MV, Evangelista RC.

Carbohydr Polym. 2013 Jan 2;91(1):244-52. doi: 10.1016/j.carbpol.2012.08.044. Epub 2012 Aug 20.

PMID:
23044129
37.

HiTC: exploration of high-throughput 'C' experiments.

Servant N, Lajoie BR, Nora EP, Giorgetti L, Chen CJ, Heard E, Dekker J, Barillot E.

Bioinformatics. 2012 Nov 1;28(21):2843-4. doi: 10.1093/bioinformatics/bts521. Epub 2012 Aug 24.

38.

Itraconazole inhibits HMEC-1 angiogenesis.

Del Carratore R, Carpi A, Beffy P, Lubrano V, Giorgetti L, Maserti BE, Carluccio MA, Simili M, Iervasi G, Balzan S.

Biomed Pharmacother. 2012 Jun;66(4):312-7. doi: 10.1016/j.biopha.2011.11.004. Epub 2011 Dec 21.

PMID:
22564244
39.

Spatial partitioning of the regulatory landscape of the X-inactivation centre.

Nora EP, Lajoie BR, Schulz EG, Giorgetti L, Okamoto I, Servant N, Piolot T, van Berkum NL, Meisig J, Sedat J, Gribnau J, Barillot E, Blüthgen N, Dekker J, Heard E.

Nature. 2012 Apr 11;485(7398):381-5. doi: 10.1038/nature11049.

40.

Exogenous cytokinin treatments of an Ni hyper-accumulator, Alyssum murale, grown in a serpentine soil: implications for phytoextraction.

Cassina L, Tassi E, Morelli E, Giorgetti L, Remorini D, Chaney RL, Barbafieri M.

Int J Phytoremediation. 2011;13 Suppl 1:90-101.

PMID:
22046753
41.

Cytological and molecular characterization of Vicia barbazitae Ten. & Guss.

Ruffini Castiglione M, Frediani M, Gelati MT, Venora G, Giorgetti L, Caputo P, Cremonini R.

Protoplasma. 2012 Jul;249(3):779-88. doi: 10.1007/s00709-011-0323-0. Epub 2011 Oct 4.

PMID:
21969240
42.

Genotoxicity evaluation of effluents from textile industries of the region Fez-Boulmane, Morocco: a case study.

Giorgetti L, Talouizte H, Merzouki M, Caltavuturo L, Geri C, Frassinetti S.

Ecotoxicol Environ Saf. 2011 Nov;74(8):2275-83. doi: 10.1016/j.ecoenv.2011.08.002. Epub 2011 Aug 12.

PMID:
21840051
43.

The effect of surface nanometre-scale morphology on protein adsorption.

Scopelliti PE, Borgonovo A, Indrieri M, Giorgetti L, Bongiorno G, Carbone R, Podestà A, Milani P.

PLoS One. 2010 Jul 29;5(7):e11862. doi: 10.1371/journal.pone.0011862.

44.

Noncooperative interactions between transcription factors and clustered DNA binding sites enable graded transcriptional responses to environmental inputs.

Giorgetti L, Siggers T, Tiana G, Caprara G, Notarbartolo S, Corona T, Pasparakis M, Milani P, Bulyk ML, Natoli G.

Mol Cell. 2010 Feb 12;37(3):418-28. doi: 10.1016/j.molcel.2010.01.016.

45.

Pirin delocalization in melanoma progression identified by high content immuno-detection based approaches.

Licciulli S, Luise C, Zanardi A, Giorgetti L, Viale G, Lanfrancone L, Carbone R, Alcalay M.

BMC Cell Biol. 2010 Jan 20;11:5. doi: 10.1186/1471-2121-11-5.

46.

Indoleacetic acid concentration and metabolism changes during bud development in tubers of two potato (Solanum tuberosum) cultivars.

Sorce C, Lombardi L, Giorgetti L, Parisi B, Ranalli P, Lorenzi R.

J Plant Physiol. 2009 Jul 1;166(10):1023-33. doi: 10.1016/j.jplph.2008.12.003. Epub 2009 Mar 9.

PMID:
19269711
47.

Adsorption and stability of streptavidin on cluster-assembled nanostructured TiOx films.

Giorgetti L, Bongiorno G, Podestà A, Berlanda G, Scopelliti PE, Carbone R, Milani P.

Langmuir. 2008 Oct 21;24(20):11637-44. doi: 10.1021/la801910p. Epub 2008 Sep 27.

PMID:
18823082
48.

ImmunoCell-Array: a novel technology for pathway discovery and cell profiling.

Giorgetti L, Zanardi A, Venturini S, Carbone R.

Expert Rev Proteomics. 2007 Oct;4(5):609-16. Review.

PMID:
17941816
49.

Expression of HtKNOT1, a class I KNOX gene, overlaps cell layers and development compartments of differentiating cells in stems and flowers of Helianthus tuberosus.

Michelotti V, Giorgetti L, Geri C, Cionini G, Pugliesi C, Fambrini M.

Cell Biol Int. 2007 Oct;31(10):1280-7. Epub 2007 Mar 31.

PMID:
17490899
50.

Immunocell-array for molecular dissection of multiple signaling pathways in mammalian cells.

Zanardi A, Giorgetti L, Botrugno OA, Minucci S, Milani P, Pelicci PG, Carbone R.

Mol Cell Proteomics. 2007 May;6(5):939-47. Epub 2007 Feb 10.

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