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Outcomes of Elbow Flexion Reconstruction in Patients Over 50 with Traumatic Brachial Plexus Injury.

Gillis JA, Khouri JS, Faupel MF, Spinner RJ, Bishop AT, Shin AY.

Plast Reconstr Surg. 2018 Oct 10. doi: 10.1097/PRS.0000000000005094. [Epub ahead of print]


VaxArray potency assay for rapid assessment of "pandemic" influenza vaccines.

Byrne-Nash RT, Miller DF, Bueter KM, Gillis JH, Kuck LR, Rowlen KL.

NPJ Vaccines. 2018 Oct 8;3:43. doi: 10.1038/s41541-018-0080-6. eCollection 2018.


What We Do: Povidone-Iodine Solution to Delineate the Cutaneous Roll.

Morzycki A, Gillis J, Bezuhly M.

Cleft Palate Craniofac J. 2018 Oct 10:1055665618805883. doi: 10.1177/1055665618805883. [Epub ahead of print]


Outcomes of shoulder abduction after nerve surgery in patients over 50 years following traumatic brachial plexus injury.

Gillis JA, Khouri JS, Kircher MF, Spinner RJ, Bishop AT, Shin AY.

J Plast Reconstr Aesthet Surg. 2018 Sep 20. pii: S1748-6815(18)30333-4. doi: 10.1016/j.bjps.2018.09.008. [Epub ahead of print]


Visual Estimation of Dupuytren's Flexion Contractures-A Prospective Comparative Trial.

Corkum JP, Gillis JA, Tang DT.

Plast Surg (Oakv). 2018 Aug;26(3):165-168. doi: 10.1177/2292550317750138. Epub 2018 Jan 9.


Co-expression in Single-Cell Analysis: Saving Grace or Original Sin?

Crow M, Gillis J.

Trends Genet. 2018 Nov;34(11):823-831. doi: 10.1016/j.tig.2018.07.007. Epub 2018 Aug 23. Review.


CARMA3 Mediates Allergic Lung Inflammation in Response to Alternaria alternata.

Causton B, Pardo-Saganta A, Gillis J, Discipio K, Kooistra T, Rajagopal J, Xavier RJ, Cho JL, Medoff BD.

Am J Respir Cell Mol Biol. 2018 Jun 29. doi: 10.1165/rcmb.2017-0181OC. [Epub ahead of print]


Promoting early expression of breast milk in mothers of preterm infants in a neonatal unit: a best practice implementation project.

Goodchild L, Hussey L, McPhee AJ, Lizarondo L, Gillis J, Collins CT.

JBI Database System Rev Implement Rep. 2018 Oct;16(10):2027-2037. doi: 10.11124/JBISRIR-2017-003534.


The fractured landscape of RNA-seq alignment: the default in our STARs.

Ballouz S, Dobin A, Gingeras TR, Gillis J.

Nucleic Acids Res. 2018 Jun 1;46(10):5125-5138. doi: 10.1093/nar/gky325.


VaxArray for hemagglutinin and neuraminidase potency testing of influenza vaccines.

Kuck LR, Byrne-Nash R, Gillis J, Bueter K, Couzens LK, Eichelberger MC, Rowlen KL.

Vaccine. 2018 May 17;36(21):2937-2945. doi: 10.1016/j.vaccine.2018.04.048. Epub 2018 Apr 23.


Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor.

Crow M, Paul A, Ballouz S, Huang ZJ, Gillis J.

Nat Commun. 2018 Feb 28;9(1):884. doi: 10.1038/s41467-018-03282-0.


Dysregulated fibronectin trafficking by Hsp90 inhibition restricts prostate cancer cell invasion.

Armstrong HK, Gillis JL, Johnson IRD, Nassar ZD, Moldovan M, Levrier C, Sadowski MC, Chin MY, Tomlinson Guns ES, Tarulli G, Lynn DJ, Brooks DA, Selth LA, Centenera MM, Butler LM.

Sci Rep. 2018 Feb 1;8(1):2090. doi: 10.1038/s41598-018-19871-4.


Single-cell transcriptomics of the developing lateral geniculate nucleus reveals insights into circuit assembly and refinement.

Kalish BT, Cheadle L, Hrvatin S, Nagy MA, Rivera S, Crow M, Gillis J, Kirchner R, Greenberg ME.

Proc Natl Acad Sci U S A. 2018 Jan 30;115(5):E1051-E1060. doi: 10.1073/pnas.1717871115. Epub 2018 Jan 17.


Patterns of late-life depressive symptoms and subsequent declines in cognitive domains.

Gillis JC, Chang SC, Devore EE, Rosner BA, Grodstein F, Okereke OI.

Int J Geriatr Psychiatry. 2017 Dec;32(12):1330-1341. doi: 10.1002/gps.4618. Epub 2016 Nov 7.


Embryonic origin of the gnathostome vertebral skeleton.

Criswell KE, Coates MI, Gillis JA.

Proc Biol Sci. 2017 Nov 29;284(1867). pii: 20172121. doi: 10.1098/rspb.2017.2121.


Trunk neural crest origin of dermal denticles in a cartilaginous fish.

Gillis JA, Alsema EC, Criswell KE.

Proc Natl Acad Sci U S A. 2017 Dec 12;114(50):13200-13205. doi: 10.1073/pnas.1713827114. Epub 2017 Nov 20.


Visual and acoustic components of courtship in the bird-of-paradise genus Astrapia (Aves: Paradisaeidae).

Scholes E, Gillis JM, Laman TG.

PeerJ. 2017 Nov 8;5:e3987. doi: 10.7717/peerj.3987. eCollection 2017.


Potential for mcl-PHA production from nonanoic and azelaic acids.

Gillis J, Ko K, Ramsay JA, Ramsay BA.

Can J Microbiol. 2018 Jan;64(1):11-19. doi: 10.1139/cjm-2017-0554. Epub 2017 Oct 17.


Three-Dimensional Printing: A Novel Approach to the Creation of Obturator Prostheses Following Palatal Resection for Malignant Palate Tumors.

Bartellas M, Tibbo J, Angel D, Rideout A, Gillis J.

J Craniofac Surg. 2018 Jan;29(1):e12-e15. doi: 10.1097/SCS.0000000000003987.


Transcriptional Architecture of Synaptic Communication Delineates GABAergic Neuron Identity.

Paul A, Crow M, Raudales R, He M, Gillis J, Huang ZJ.

Cell. 2017 Oct 19;171(3):522-539.e20. doi: 10.1016/j.cell.2017.08.032. Epub 2017 Sep 21.


The influence of foam rolling on recovery from exercise-induced muscle damage.

D'Amico AP, Gillis J.

J Strength Cond Res. 2017 Sep 6. doi: 10.1519/JSC.0000000000002240. [Epub ahead of print]


Strength of functional signature correlates with effect size in autism.

Ballouz S, Gillis J.

Genome Med. 2017 Jul 7;9(1):64. doi: 10.1186/s13073-017-0455-8.


Genotype and phenotype spectrum of NRAS germline variants.

Altmüller F, Lissewski C, Bertola D, Flex E, Stark Z, Spranger S, Baynam G, Buscarilli M, Dyack S, Gillis J, Yntema HG, Pantaleoni F, van Loon RL, MacKay S, Mina K, Schanze I, Tan TY, Walsh M, White SM, Niewisch MR, García-Miñaúr S, Plaza D, Ahmadian MR, Cavé H, Tartaglia M, Zenker M.

Eur J Hum Genet. 2017 Jun;25(7):823-831. doi: 10.1038/ejhg.2017.65. Epub 2017 May 3.


The Effect of Word Frequency on Phonemic Accuracy in Children With Cochlear Implants and Peers With Typical Levels of Hearing.

Faes J, Gillis J, Gillis S.

J Deaf Stud Deaf Educ. 2017 Jul 1;22(3):290-302. doi: 10.1093/deafed/enx017.


Cost analysis of percutaneous fixation of hand fractures in the main operating room versus the ambulatory setting.

Gillis JA, Williams JG.

J Plast Reconstr Aesthet Surg. 2017 Aug;70(8):1044-1050. doi: 10.1016/j.bjps.2017.05.011. Epub 2017 May 20.


Gamma-Ray Dose From an Overhead Plume.

McNaughton MW, Gillis JM, Ruedig E, Whicker JJ, Fuehne DP.

Health Phys. 2017 May;112(5):445-450. doi: 10.1097/HP.0000000000000643.


Accuracy of Cloudshine Gamma Dose Calculations in the CAP-88 Dispersion Model.

McNaughton MW, Gillis JM, Ruedig E, Whicker JJ, Fuehne DP.

Health Phys. 2017 Apr;112(4):414-419. doi: 10.1097/HP.0000000000000653.


A review of penile elongation surgery.

Campbell J, Gillis J.

Transl Androl Urol. 2017 Feb;6(1):69-78. doi: 10.21037/tau.2016.11.19. Review.


Using predictive specificity to determine when gene set analysis is biologically meaningful.

Ballouz S, Pavlidis P, Gillis J.

Nucleic Acids Res. 2017 Feb 28;45(4):e20. doi: 10.1093/nar/gkw957.


The Origin of Vertebrate Gills.

Gillis JA, Tidswell OR.

Curr Biol. 2017 Mar 6;27(5):729-732. doi: 10.1016/j.cub.2017.01.022. Epub 2017 Feb 9.


Hypogonadotropic Hypogonadism in Males with Glycogen Storage Disease Type 1.

Wong EM, Lehman A, Acott P, Gillis J, Metzger DL, Sirrs S.

JIMD Rep. 2017;36:79-84. doi: 10.1007/8904_2016_38. Epub 2017 Feb 4.


Embryonic development of the axial column in the little skate, Leucoraja erinacea.

Criswell KE, Coates MI, Gillis JA.

J Morphol. 2017 Mar;278(3):300-320. doi: 10.1002/jmor.20637. Epub 2017 Jan 31.


EGAD: ultra-fast functional analysis of gene networks.

Ballouz S, Weber M, Pavlidis P, Gillis J.

Bioinformatics. 2017 Feb 15;33(4):612-614. doi: 10.1093/bioinformatics/btw695.


Persistent Low-Level Replication of SIVΔnef Drives Maturation of Antibody and CD8 T Cell Responses to Induce Protective Immunity against Vaginal SIV Infection.

Adnan S, Reeves RK, Gillis J, Wong FE, Yu Y, Camp JV, Li Q, Connole M, Li Y, Piatak M Jr, Lifson JD, Li W, Keele BF, Kozlowski PA, Desrosiers RC, Haase AT, Johnson RP.

PLoS Pathog. 2016 Dec 13;12(12):e1006104. doi: 10.1371/journal.ppat.1006104. eCollection 2016 Dec.


Experiences of caregivers of children with inherited metabolic diseases: a qualitative study.

Siddiq S, Wilson BJ, Graham ID, Lamoureux M, Khangura SD, Tingley K, Tessier L, Chakraborty P, Coyle D, Dyack S, Gillis J, Greenberg C, Hayeems RZ, Jain-Ghai S, Kronick JB, Laberge AM, Little J, Mitchell JJ, Prasad C, Siriwardena K, Sparkes R, Speechley KN, Stockler S, Trakadis Y, Wafa S, Walia J, Wilson K, Yuskiv N, Potter BK; Canadian Inherited Metabolic Diseases Research Network (CIMDRN).

Orphanet J Rare Dis. 2016 Dec 7;11(1):168.


A Multi-State Model Examining Patterns of Transitioning Among States of Engagement in Care in HIV-Positive Individuals Initiating Combination Antiretroviral Therapy.

Gillis J, Loutfy M, Bayoumi AM, Antoniou T, Burchell AN, Walmsley S, Cooper C, Klein MB, Machouf N, Montaner JS, Rourke SB, Tsoukas C, Hogg R, Raboud J; CANOC Collaboration.

J Acquir Immune Defic Syndr. 2016 Dec 15;73(5):531-539.


Avoidance of bottles during the establishment of breast feeds in preterm infants.

Collins CT, Gillis J, McPhee AJ, Suganuma H, Makrides M.

Cochrane Database Syst Rev. 2016 Oct 19;10:CD005252. Review.


Women's Experiences With Flap Failure After Autologous Breast Reconstruction: A Qualitative Analysis.

Higgins KS, Gillis J, Williams JG, LeBlanc M, Bezuhly M, Chorney JM.

Ann Plast Surg. 2017 May;78(5):521-525. doi: 10.1097/SAP.0000000000000910.


Avoidance of bottles during the establishment of breast feeds in preterm infants.

Collins CT, Gillis J, McPhee AJ, Suganuma H, Makrides M.

Cochrane Database Syst Rev. 2016 Sep 30;9:CD005252. doi: 10.1002/14651858.CD005252.pub3. Review. Update in: Cochrane Database Syst Rev. 2016 Oct 19;10 :CD005252.


An expanded evaluation of protein function prediction methods shows an improvement in accuracy.

Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SM, Martelli PL, Profiti G, Casadio R, Cao R, Zhong Z, Cheng J, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Törönen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Bkc D, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang H, Paccanaro A, Gillis J, Sedeño-Cortés AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong Q, Ning W, Zhou Y, Tian W, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SC, Del Pozo A, Fernández JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehman HU, Re M, Mesiti M, Valentini G, Bargsten JW, van Dijk AD, Gemovic B, Glisic S, Perovic V, Veljkovic V, Veljkovic N, Almeida-E-Silva DC, Vencio RZ, Sharan M, Vogel J, Kansakar L, Zhang S, Vucetic S, Wang Z, Sternberg MJ, Wass MN, Huntley RP, Martin MJ, O'Donovan C, Robinson PN, Moreau Y, Tramontano A, Babbitt PC, Brenner SE, Linial M, Orengo CA, Rost B, Greene CS, Mooney SD, Friedberg I, Radivojac P.

Genome Biol. 2016 Sep 7;17(1):184. doi: 10.1186/s13059-016-1037-6.


Lethal and sub-lethal effects of triclosan toxicity to the earthworm Eisenia fetida assessed through GC-MS metabolomics.

Gillis JD, Price GW, Prasher S.

J Hazard Mater. 2017 Feb 5;323(Pt A):203-211. doi: 10.1016/j.jhazmat.2016.07.022. Epub 2016 Jul 7.


Ligand Similarity Complements Sequence, Physical Interaction, and Co-Expression for Gene Function Prediction.

O'Meara MJ, Ballouz S, Shoichet BK, Gillis J.

PLoS One. 2016 Jul 28;11(7):e0160098. doi: 10.1371/journal.pone.0160098. eCollection 2016.


Gene-specific patterns of expression variation across organs and species.

Breschi A, Djebali S, Gillis J, Pervouchine DD, Dobin A, Davis CA, Gingeras TR, Guigó R.

Genome Biol. 2016 Jul 8;17(1):151. doi: 10.1186/s13059-016-1008-y.


Association Between Anaerobic Metabolic Demands During Simulated Brazilian Jiu-Jitsu Combat and Specific Jiu-Jitsu Anaerobic Performance Test.

Villar R, Gillis J, Santana G, Pinheiro DS, Almeida ALRA.

J Strength Cond Res. 2018 Feb;32(2):432-440. doi: 10.1519/JSC.0000000000001536.


Using the PDD Behavior Inventory as a Level 2 Screener: A Classification and Regression Trees Analysis.

Cohen IL, Liu X, Hudson M, Gillis J, Cavalari RN, Romanczyk RG, Karmel BZ, Gardner JM.

J Autism Dev Disord. 2016 Sep;46(9):3006-22. doi: 10.1007/s10803-016-2843-0.


Exploiting single-cell expression to characterize co-expression replicability.

Crow M, Paul A, Ballouz S, Huang ZJ, Gillis J.

Genome Biol. 2016 May 6;17:101. doi: 10.1186/s13059-016-0964-6.


A shared role for sonic hedgehog signalling in patterning chondrichthyan gill arch appendages and tetrapod limbs.

Gillis JA, Hall BK.

Development. 2016 Apr 15;143(8):1313-7. doi: 10.1242/dev.133884.


Keeping Ebola out of the lab: a practical solution on how to analyze Ebola associated blood anomalies.

van den Wijngaard JP, Bakker JA, Gillis JM, Ballieux BE, de Vries JJ, Schenk PW, Cobbaert CM.

Clin Chem Lab Med. 2016 Nov 1;54(11):e353-e357. doi: 10.1515/cclm-2015-1225. No abstract available.


AuPairWise: A Method to Estimate RNA-Seq Replicability through Co-expression.

Ballouz S, Gillis J.

PLoS Comput Biol. 2016 Apr 15;12(4):e1004868. doi: 10.1371/journal.pcbi.1004868. eCollection 2016 Apr.

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