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Items: 1 to 50 of 129

1.

Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources.

Sulakhe D, D'Souza M, Wang S, Balasubramanian S, Athri P, Xie B, Canzar S, Agam G, Gilliam TC, Maltsev N.

Brief Bioinform. 2018 Jun 21. doi: 10.1093/bib/bby047. [Epub ahead of print]

PMID:
29931155
2.

Chemokine expression in the early response to injury in human airway epithelial cells.

Xie B, Laxman B, Hashemifar S, Stern R, Gilliam TC, Maltsev N, White SR.

PLoS One. 2018 Mar 13;13(3):e0193334. doi: 10.1371/journal.pone.0193334. eCollection 2018.

3.

A p53-regulated apoptotic gene signature predicts treatment response and outcome in pediatric acute lymphoblastic leukemia.

Bainer RO, Trendowski MR, Cheng C, Pei D, Yang W, Paugh SW, Goss KH, Skol AD, Pavlidis P, Pui CH, Gilliam TC, Evans WE, Onel K.

Cancer Manag Res. 2017 Sep 13;9:397-410. doi: 10.2147/CMAR.S139864. eCollection 2017.

4.

Lynx: a knowledge base and an analytical workbench for integrative medicine.

Sulakhe D, Xie B, Taylor A, D'Souza M, Balasubramanian S, Hashemifar S, White S, Dave UJ, Agam G, Xu J, Wang S, Gilliam TC, Maltsev N.

Nucleic Acids Res. 2016 Jan 4;44(D1):D882-7. doi: 10.1093/nar/gkv1257. Epub 2015 Nov 20.

5.

Disease gene prioritization using network and feature.

Xie B, Agam G, Balasubramanian S, Xu J, Gilliam TC, Maltsev N, Börnigen D.

J Comput Biol. 2015 Apr;22(4):313-23. doi: 10.1089/cmb.2015.0001.

6.

An integrative computational approach for prioritization of genomic variants.

Dubchak I, Balasubramanian S, Wang S, Cem M, Sulakhe D, Poliakov A, Börnigen D, Xie B, Taylor A, Ma J, Paciorkowski AR, Mirzaa GM, Dave P, Agam G, Xu J, Al-Gazali L, Mason CE, Ross ME, Maltsev N, Gilliam TC.

PLoS One. 2014 Dec 15;9(12):e114903. doi: 10.1371/journal.pone.0114903. eCollection 2014. Erratum in: PLoS One. 2015;10(4):e0124700. Meyden, Cem [corrected to Meydan, Cem].

7.

Lynx web services for annotations and systems analysis of multi-gene disorders.

Sulakhe D, Taylor A, Balasubramanian S, Feng B, Xie B, Börnigen D, Dave UJ, Foster IT, Gilliam TC, Maltsev N.

Nucleic Acids Res. 2014 Jul;42(Web Server issue):W473-7. doi: 10.1093/nar/gku517. Epub 2014 Jun 19.

8.

High-throughput translational medicine: challenges and solutions.

Sulakhe D, Balasubramanian S, Xie B, Berrocal E, Feng B, Taylor A, Chitturi B, Dave U, Agam G, Xu J, Börnigen D, Dubchak I, Gilliam TC, Maltsev N.

Adv Exp Med Biol. 2014;799:39-67. doi: 10.1007/978-1-4614-8778-4_3. Review.

PMID:
24292961
9.

Lynx: a database and knowledge extraction engine for integrative medicine.

Sulakhe D, Balasubramanian S, Xie B, Feng B, Taylor A, Wang S, Berrocal E, Dave U, Xu J, Börnigen D, Gilliam TC, Maltsev N.

Nucleic Acids Res. 2014 Jan;42(Database issue):D1007-12. doi: 10.1093/nar/gkt1166. Epub 2013 Nov 21.

10.

Panic disorder is associated with the serotonin transporter gene (SLC6A4) but not the promoter region (5-HTTLPR).

Strug LJ, Suresh R, Fyer AJ, Talati A, Adams PB, Li W, Hodge SE, Gilliam TC, Weissman MM.

Mol Psychiatry. 2010 Feb;15(2):166-76. doi: 10.1038/mp.2008.79. Epub 2008 Jul 29.

11.

Genetic-linkage mapping of complex hereditary disorders to a whole-genome molecular-interaction network.

Iossifov I, Zheng T, Baron M, Gilliam TC, Rzhetsky A.

Genome Res. 2008 Jul;18(7):1150-62. doi: 10.1101/gr.075622.107. Epub 2008 Apr 16.

12.

Novel submicroscopic chromosomal abnormalities detected in autism spectrum disorder.

Christian SL, Brune CW, Sudi J, Kumar RA, Liu S, Karamohamed S, Badner JA, Matsui S, Conroy J, McQuaid D, Gergel J, Hatchwell E, Gilliam TC, Gershon ES, Nowak NJ, Dobyns WB, Cook EH Jr.

Biol Psychiatry. 2008 Jun 15;63(12):1111-7. doi: 10.1016/j.biopsych.2008.01.009. Epub 2008 Mar 28.

13.

Rapid selection response for contextual fear conditioning in a cross between C57BL/6J and A/J: behavioral, QTL and gene expression analysis.

Ponder CA, Huded CP, Munoz MB, Gulden FO, Gilliam TC, Palmer AA.

Behav Genet. 2008 May;38(3):277-91. doi: 10.1007/s10519-008-9203-6. Epub 2008 Mar 25.

14.

Recurrent 16p11.2 microdeletions in autism.

Kumar RA, KaraMohamed S, Sudi J, Conrad DF, Brune C, Badner JA, Gilliam TC, Nowak NJ, Cook EH Jr, Dobyns WB, Christian SL.

Hum Mol Genet. 2008 Feb 15;17(4):628-38. Epub 2007 Dec 21.

PMID:
18156158
15.

Genetic architecture of fear conditioning in chromosome substitution strains: relationship to measures of innate (unlearned) anxiety-like behavior.

Ponder CA, Munoz M, Gilliam TC, Palmer AA.

Mamm Genome. 2007 Apr;18(4):221-8. Epub 2007 May 10.

PMID:
17492333
16.

Strong association of de novo copy number mutations with autism.

Sebat J, Lakshmi B, Malhotra D, Troge J, Lese-Martin C, Walsh T, Yamrom B, Yoon S, Krasnitz A, Kendall J, Leotta A, Pai D, Zhang R, Lee YH, Hicks J, Spence SJ, Lee AT, Puura K, Lehtimäki T, Ledbetter D, Gregersen PK, Bregman J, Sutcliffe JS, Jobanputra V, Chung W, Warburton D, King MC, Skuse D, Geschwind DH, Gilliam TC, Ye K, Wigler M.

Science. 2007 Apr 20;316(5823):445-9. Epub 2007 Mar 15.

17.

Mapping autism risk loci using genetic linkage and chromosomal rearrangements.

Autism Genome Project Consortium, Szatmari P, Paterson AD, Zwaigenbaum L, Roberts W, Brian J, Liu XQ, Vincent JB, Skaug JL, Thompson AP, Senman L, Feuk L, Qian C, Bryson SE, Jones MB, Marshall CR, Scherer SW, Vieland VJ, Bartlett C, Mangin LV, Goedken R, Segre A, Pericak-Vance MA, Cuccaro ML, Gilbert JR, Wright HH, Abramson RK, Betancur C, Bourgeron T, Gillberg C, Leboyer M, Buxbaum JD, Davis KL, Hollander E, Silverman JM, Hallmayer J, Lotspeich L, Sutcliffe JS, Haines JL, Folstein SE, Piven J, Wassink TH, Sheffield V, Geschwind DH, Bucan M, Brown WT, Cantor RM, Constantino JN, Gilliam TC, Herbert M, Lajonchere C, Ledbetter DH, Lese-Martin C, Miller J, Nelson S, Samango-Sprouse CA, Spence S, State M, Tanzi RE, Coon H, Dawson G, Devlin B, Estes A, Flodman P, Klei L, McMahon WM, Minshew N, Munson J, Korvatska E, Rodier PM, Schellenberg GD, Smith M, Spence MA, Stodgell C, Tepper PG, Wijsman EM, Yu CE, Rogé B, Mantoulan C, Wittemeyer K, Poustka A, Felder B, Klauck SM, Schuster C, Poustka F, Bölte S, Feineis-Matthews S, Herbrecht E, Schmötzer G, Tsiantis J, Papanikolaou K, Maestrini E, Bacchelli E, Blasi F, Carone S, Toma C, Van Engeland H, de Jonge M, Kemner C, Koop F, Langemeijer M, Hijmans C, Staal WG, Baird G, Bolton PF, Rutter ML, Weisblatt E, Green J, Aldred C, Wilkinson JA, Pickles A, Le Couteur A, Berney T, McConachie H, Bailey AJ, Francis K, Honeyman G, Hutchinson A, Parr JR, Wallace S, Monaco AP, Barnby G, Kobayashi K, Lamb JA, Sousa I, Sykes N, Cook EH, Guter SJ, Leventhal BL, Salt J, Lord C, Corsello C, Hus V, Weeks DE, Volkmar F, Tauber M, Fombonne E, Shih A, Meyer KJ.

Nat Genet. 2007 Mar;39(3):319-28. Epub 2007 Feb 18. Erratum in: Nat Genet. 2007 Oct;39(10):1285. Meyer, Kacie J [added]; Koop, Frederike [corrected to Koop, Frederieke]; Langemeijer, Marjolijn [corrected to Langemeijer, Marjolein]; Hijimans, Channa [corrected to Hijmans, Channa].

18.

Selection for contextual fear conditioning affects anxiety-like behaviors and gene expression.

Ponder CA, Kliethermes CL, Drew MR, Muller J, Das K, Risbrough VB, Crabbe JC, Gilliam TC, Palmer AA.

Genes Brain Behav. 2007 Nov;6(8):736-49. Epub 2007 Feb 16.

19.

Genomewide scan for linkage reveals evidence of several susceptibility loci for alopecia areata.

Martinez-Mir A, Zlotogorski A, Gordon D, Petukhova L, Mo J, Gilliam TC, Londono D, Haynes C, Ott J, Hordinsky M, Nanova K, Norris D, Price V, Duvic M, Christiano AM.

Am J Hum Genet. 2007 Feb;80(2):316-28. Epub 2007 Jan 5.

20.

DRD2 C957T polymorphism interacts with the COMT Val158Met polymorphism in human working memory ability.

Xu H, Kellendonk CB, Simpson EH, Keilp JG, Bruder GE, Polan HJ, Kandel ER, Gilliam TC.

Schizophr Res. 2007 Feb;90(1-3):104-7. Epub 2006 Nov 17.

PMID:
17113268
21.

Genome-wide linkage scan in a large bipolar disorder sample from the National Institute of Mental Health genetics initiative suggests putative loci for bipolar disorder, psychosis, suicide, and panic disorder.

Cheng R, Juo SH, Loth JE, Nee J, Iossifov I, Blumenthal R, Sharpe L, Kanyas K, Lerer B, Lilliston B, Smith M, Trautman K, Gilliam TC, Endicott J, Baron M.

Mol Psychiatry. 2006 Mar;11(3):252-60.

PMID:
16402137
22.
23.

Combined analysis from eleven linkage studies of bipolar disorder provides strong evidence of susceptibility loci on chromosomes 6q and 8q.

McQueen MB, Devlin B, Faraone SV, Nimgaonkar VL, Sklar P, Smoller JW, Abou Jamra R, Albus M, Bacanu SA, Baron M, Barrett TB, Berrettini W, Blacker D, Byerley W, Cichon S, Coryell W, Craddock N, Daly MJ, Depaulo JR, Edenberg HJ, Foroud T, Gill M, Gilliam TC, Hamshere M, Jones I, Jones L, Juo SH, Kelsoe JR, Lambert D, Lange C, Lerer B, Liu J, Maier W, Mackinnon JD, McInnis MG, McMahon FJ, Murphy DL, Nothen MM, Nurnberger JI, Pato CN, Pato MT, Potash JB, Propping P, Pulver AE, Rice JP, Rietschel M, Scheftner W, Schumacher J, Segurado R, Van Steen K, Xie W, Zandi PP, Laird NM.

Am J Hum Genet. 2005 Oct;77(4):582-95. Epub 2005 Aug 15.

24.

Psychosis and the genetic spectrum of bipolar disorder: evidence from linkage analysis.

Cheng R, Park N, Juo SH, Liu J, Loth JE, Endicott J, Gilliam TC, Baron M.

Mol Psychiatry. 2006 Jan;11(1):3-5. No abstract available.

PMID:
16172609
25.

Gene expression differences in mice divergently selected for methamphetamine sensitivity.

Palmer AA, Verbitsky M, Suresh R, Kamens HM, Reed CL, Li N, Burkhart-Kasch S, McKinnon CS, Belknap JK, Gilliam TC, Phillips TJ.

Mamm Genome. 2005 May;16(5):291-305.

PMID:
16104378
26.

Catechol-O-methyltransferase (COMT) genotypes and working memory: associations with differing cognitive operations.

Bruder GE, Keilp JG, Xu H, Shikhman M, Schori E, Gorman JM, Gilliam TC.

Biol Psychiatry. 2005 Dec 1;58(11):901-7. Epub 2005 Jul 25.

PMID:
16043133
27.

Quantitative genome scan and Ordered-Subsets Analysis of autism endophenotypes support language QTLs.

Alarcón M, Yonan AL, Gilliam TC, Cantor RM, Geschwind DH.

Mol Psychiatry. 2005 Aug;10(8):747-57.

PMID:
15824743
28.

Absence of psychosis may influence linkage results for bipolar disorder.

Park N, Cheng R, Juo SH, Liu J, Loth JE, Endicott J, Gilliam TC, Baron M.

Mol Psychiatry. 2005 Mar;10(3):235-7. No abstract available.

PMID:
15570316
29.

Molecular triangulation: bridging linkage and molecular-network information for identifying candidate genes in Alzheimer's disease.

Krauthammer M, Kaufmann CA, Gilliam TC, Rzhetsky A.

Proc Natl Acad Sci U S A. 2004 Oct 19;101(42):15148-53. Epub 2004 Oct 7.

30.

Evidence for sex-specific risk alleles in autism spectrum disorder.

Stone JL, Merriman B, Cantor RM, Yonan AL, Gilliam TC, Geschwind DH, Nelson SF.

Am J Hum Genet. 2004 Dec;75(6):1117-23. Epub 2004 Oct 5.

31.

Cloning of the breakpoints of a de novo inversion of chromosome 8, inv (8)(p11.2q23.1) in a patient with Ambras syndrome.

Tadin-Strapps M, Warburton D, Baumeister FA, Fischer SG, Yonan J, Gilliam TC, Christiano AM.

Cytogenet Genome Res. 2004;107(1-2):68-76.

PMID:
15305058
32.

Screen for expanded FMR1 alleles in patients with essential tremor.

Garcia Arocena D, Louis ED, Tassone F, Gilliam TC, Ottman R, Jacquemont S, Hagerman PJ.

Mov Disord. 2004 Aug;19(8):930-3.

PMID:
15300658
33.

Large-scale copy number polymorphism in the human genome.

Sebat J, Lakshmi B, Troge J, Alexander J, Young J, Lundin P, Månér S, Massa H, Walker M, Chi M, Navin N, Lucito R, Healy J, Hicks J, Ye K, Reiner A, Gilliam TC, Trask B, Patterson N, Zetterberg A, Wigler M.

Science. 2004 Jul 23;305(5683):525-8.

34.

Linkage analysis of psychosis in bipolar pedigrees suggests novel putative loci for bipolar disorder and shared susceptibility with schizophrenia.

Park N, Juo SH, Cheng R, Liu J, Loth JE, Lilliston B, Nee J, Grunn A, Kanyas K, Lerer B, Endicott J, Gilliam TC, Baron M.

Mol Psychiatry. 2004 Dec;9(12):1091-9.

PMID:
15241432
35.

Population-based study of SR-BI genetic variation and lipid profile.

Morabia A, Ross BM, Costanza MC, Cayanis E, Flaherty MS, Alvin GB, Das K, James R, Yang AS, Evagrafov O, Gilliam TC.

Atherosclerosis. 2004 Jul;175(1):159-68.

PMID:
15186961
36.

Altered hippocampal transcript profile accompanies an age-related spatial memory deficit in mice.

Verbitsky M, Yonan AL, Malleret G, Kandel ER, Gilliam TC, Pavlidis P.

Learn Mem. 2004 May-Jun;11(3):253-60.

37.

LGI1 mutations in autosomal dominant partial epilepsy with auditory features.

Ottman R, Winawer MR, Kalachikov S, Barker-Cummings C, Gilliam TC, Pedley TA, Hauser WA.

Neurology. 2004 Apr 13;62(7):1120-6.

38.

Identification of a locus for type I punctate palmoplantar keratoderma on chromosome 15q22-q24.

Martinez-Mir A, Zlotogorski A, Londono D, Gordon D, Grunn A, Uribe E, Horev L, Ruiz IM, Davalos NO, Alayan O, Liu J, Gilliam TC, Salas-Alanis JC, Christiano AM.

J Med Genet. 2003 Dec;40(12):872-8.

39.

Digital genotyping using molecular affinity and mass spectrometry.

Kim S, Ruparel HD, Gilliam TC, Ju J.

Nat Rev Genet. 2003 Dec;4(12):1001-8. Review.

PMID:
14631360
40.

Bioinformatic analysis of autism positional candidate genes using biological databases and computational gene network prediction.

Yonan AL, Palmer AA, Smith KC, Feldman I, Lee HK, Yonan JM, Fischer SG, Pavlidis P, Gilliam TC.

Genes Brain Behav. 2003 Oct;2(5):303-20.

41.

A genomewide screen of 345 families for autism-susceptibility loci.

Yonan AL, Alarcón M, Cheng R, Magnusson PK, Spence SJ, Palmer AA, Grunn A, Juo SH, Terwilliger JD, Liu J, Cantor RM, Geschwind DH, Gilliam TC.

Am J Hum Genet. 2003 Oct;73(4):886-97. Epub 2003 Sep 17.

42.

Association of extreme blood lipid profile phenotypic variation with 11 reverse cholesterol transport genes and 10 non-genetic cardiovascular disease risk factors.

Morabia A, Cayanis E, Costanza MC, Ross BM, Flaherty MS, Alvin GB, Das K, Gilliam TC.

Hum Mol Genet. 2003 Nov 1;12(21):2733-43. Epub 2003 Sep 9.

PMID:
12966036
43.

Inducible enhancement of memory storage and synaptic plasticity in transgenic mice expressing an inhibitor of ATF4 (CREB-2) and C/EBP proteins.

Chen A, Muzzio IA, Malleret G, Bartsch D, Verbitsky M, Pavlidis P, Yonan AL, Vronskaya S, Grody MB, Cepeda I, Gilliam TC, Kandel ER.

Neuron. 2003 Aug 14;39(4):655-69.

44.

Desmoglein 4 in hair follicle differentiation and epidermal adhesion: evidence from inherited hypotrichosis and acquired pemphigus vulgaris.

Kljuic A, Bazzi H, Sundberg JP, Martinez-Mir A, O'Shaughnessy R, Mahoney MG, Levy M, Montagutelli X, Ahmad W, Aita VM, Gordon D, Uitto J, Whiting D, Ott J, Fischer S, Gilliam TC, Jahoda CA, Morris RJ, Panteleyev AA, Nguyen VT, Christiano AM.

Cell. 2003 Apr 18;113(2):249-60.

45.

Association between lipoprotein lipase (LPL) gene and blood lipids: a common variant for a common trait?

Morabia A, Cayanis E, Costanza MC, Ross BM, Bernstein MS, Flaherty MS, Alvin GB, Das K, Morris MA, Penchaszadeh GK, Zhang P, Gilliam TC.

Genet Epidemiol. 2003 May;24(4):309-21.

PMID:
12687649
46.

Evidence for a putative bipolar disorder locus on 2p13-16 and other potential loci on 4q31, 7q34, 8q13, 9q31, 10q21-24, 13q32, 14q21 and 17q11-12.

Liu J, Juo SH, Dewan A, Grunn A, Tong X, Brito M, Park N, Loth JE, Kanyas K, Lerer B, Endicott J, Penchaszadeh G, Knowles JA, Ott J, Gilliam TC, Baron M.

Mol Psychiatry. 2003 Mar;8(3):333-42.

PMID:
12660806
47.
48.

Four new families with autosomal dominant partial epilepsy with auditory features: clinical description and linkage to chromosome 10q24.

Winawer MR, Martinelli Boneschi F, Barker-Cummings C, Lee JH, Liu J, Mekios C, Gilliam TC, Pedley TA, Hauser WA, Ottman R.

Epilepsia. 2002 Jan;43(1):60-7.

49.

EB simplex superficialis resulting from a mutation in the type VII collagen gene.

Martinez-Mir A, Liu J, Gordon D, Weiner MS, Ahmad W, Fine JD, Ott J, Gilliam TC, Christiano AM.

J Invest Dermatol. 2002 Mar;118(3):547-9. No abstract available.

50.

Mutations in LGI1 cause autosomal-dominant partial epilepsy with auditory features.

Kalachikov S, Evgrafov O, Ross B, Winawer M, Barker-Cummings C, Martinelli Boneschi F, Choi C, Morozov P, Das K, Teplitskaya E, Yu A, Cayanis E, Penchaszadeh G, Kottmann AH, Pedley TA, Hauser WA, Ottman R, Gilliam TC.

Nat Genet. 2002 Mar;30(3):335-41. Epub 2002 Jan 28.

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