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High-throughput proteomic analysis of FFPE tissue samples facilitates tumor stratification.

Zhu Y, Weiss T, Zhang Q, Sun R, Wang B, Yi X, Wu Z, Gao H, Cai X, Ruan G, Zhu T, Xu C, Lou S, Yu X, Gillet L, Blattmann P, Saba K, Fankhauser CD, Schmid MB, Rutishauser D, Ljubicic J, Christiansen A, Fritz C, Rupp NJ, Poyet C, Rushing E, Weller M, Roth P, Haralambieva E, Hofer S, Chen C, Jochum W, Gao X, Teng X, Chen L, Zhong Q, Wild PJ, Aebersold R, Guo T.

Mol Oncol. 2019 Sep 8. doi: 10.1002/1878-0261.12570. [Epub ahead of print]


IFN-λ Decreases Murid Herpesvirus-4 Infection of the Olfactory Epithelium but Fails to Prevent Virus Reactivation in the Vaginal Mucosa.

Jacobs S, Zeippen C, Wavreil F, Gillet L, Michiels T.

Viruses. 2019 Aug 16;11(8). pii: E757. doi: 10.3390/v11080757.


A Distinct Pool of Nav1.5 Channels at the Lateral Membrane of Murine Ventricular Cardiomyocytes.

Rougier JS, Essers MC, Gillet L, Guichard S, Sonntag S, Shmerling D, Abriel H.

Front Physiol. 2019 Jul 3;10:834. doi: 10.3389/fphys.2019.00834. eCollection 2019.


Survival cost to relocation does not reduce population self-sustainability in an amphibian.

Cayuela H, Gillet L, Laudelout A, Besnard A, Bonnaire E, Levionnois P, Muths E, Dufrêne M, Kinet T.

Ecol Appl. 2019 Jul;29(5):e01909. doi: 10.1002/eap.1909. Epub 2019 May 29.


Oral Vaccination with Replication-Competent Adenovirus in Mice Reveals Dissemination of the Viral Vaccine beyond the Gastrointestinal Tract.

Goffin E, Javaux J, Destexhe E, Pretto CD, Spindler KR, Machiels B, Gillet L.

J Virol. 2019 Jun 14;93(13). pii: e00237-19. doi: 10.1128/JVI.00237-19. Print 2019 Jul 1.


Sensitive Quantitative Proteomics of Human Hematopoietic Stem and Progenitor Cells by Data-independent Acquisition Mass Spectrometry.

Amon S, Meier-Abt F, Gillet LC, Dimitrieva S, Theocharides APA, Manz MG, Aebersold R.

Mol Cell Proteomics. 2019 Jul;18(7):1454-1467. doi: 10.1074/mcp.TIR119.001431. Epub 2019 Apr 11.


Recruitment of hepatic macrophages from monocytes is independent of IL-4Rα but is associated with ablation of resident macrophages in schistosomiasis.

Rolot M, M Dougall A, Javaux J, Lallemand F, Machiels B, Martinive P, Gillet L, Dewals BG.

Eur J Immunol. 2019 Jul;49(7):1067-1081. doi: 10.1002/eji.201847796. Epub 2019 Apr 24.


[A gammaherpesvirus infection protects against the development of allergic asthma].

Machiels B, Gillet L.

Med Sci (Paris). 2018 Oct;34(10):774-777. doi: 10.1051/medsci/2018199. Epub 2018 Nov 19. French. No abstract available.


Helminth-induced IL-4 expands bystander memory CD8+ T cells for early control of viral infection.

Rolot M, Dougall AM, Chetty A, Javaux J, Chen T, Xiao X, Machiels B, Selkirk ME, Maizels RM, Hokke C, Denis O, Brombacher F, Vanderplasschen A, Gillet L, Horsnell WGC, Dewals BG.

Nat Commun. 2018 Oct 30;9(1):4516. doi: 10.1038/s41467-018-06978-5.


Corrigendum: Transcriptomic analyses of murine ventricular cardiomyocytes.

Chevalier M, Vermij SH, Wyler K, Gillet L, Keller I, Abriel H.

Sci Data. 2018 Oct 9;5:180216. doi: 10.1038/sdata.2018.216.


Th1 and Th17 Immune Responses Act Complementarily to Optimally Control Superficial Dermatophytosis.

Heinen MP, Cambier L, Antoine N, Gabriel A, Gillet L, Bureau F, Mignon B.

J Invest Dermatol. 2019 Mar;139(3):626-637. doi: 10.1016/j.jid.2018.07.040. Epub 2018 Sep 15.


Transcriptomic analyses of murine ventricular cardiomyocytes.

Chevalier M, Vermij SH, Wyler K, Gillet L, Keller I, Abriel H.

Sci Data. 2018 Aug 21;5:180170. doi: 10.1038/sdata.2018.170. Erratum in: Sci Data. 2018 Oct 09;5:180216.


Multivalent binding of herpesvirus to living cells is tightly regulated during infection.

Delguste M, Zeippen C, Machiels B, Mast J, Gillet L, Alsteens D.

Sci Adv. 2018 Aug 17;4(8):eaat1273. doi: 10.1126/sciadv.aat1273. eCollection 2018 Aug.


Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial.

Ludwig C, Gillet L, Rosenberger G, Amon S, Collins BC, Aebersold R.

Mol Syst Biol. 2018 Aug 13;14(8):e8126. doi: 10.15252/msb.20178126. Review.


Author Correction: A gammaherpesvirus provides protection against allergic asthma by inducing the replacement of resident alveolar macrophages with regulatory monocytes.

Machiels B, Dourcy M, Xiao X, Javaux J, Mesnil C, Sabatel C, Desmecht D, Lallemand F, Martinive P, Hammad H, Guilliams M, Dewals B, Vanderplasschen A, Lambrecht BN, Bureau F, Gillet L.

Nat Immunol. 2018 Sep;19(9):1035. doi: 10.1038/s41590-017-0024-8.


Antiviral effect of the nucleoside analogue cidofovir in the context of sexual transmission of a gammaherpesvirus in mice.

Zeippen C, Javaux J, Snoeck R, Neyts J, Gillet L.

J Antimicrob Chemother. 2018 Aug 1;73(8):2095-2103. doi: 10.1093/jac/dky161.


Topography imaging of herpesvirus in native condition using atomic force microscopy.

Delguste M, Koehler M, Gillet L, Alsteens D.

Clin Microbiol Infect. 2018 Jun;24(6):610-611. doi: 10.1016/j.cmi.2018.03.018. Epub 2018 Mar 23. No abstract available.


A gammaherpesvirus provides protection against allergic asthma by inducing the replacement of resident alveolar macrophages with regulatory monocytes.

Machiels B, Dourcy M, Xiao X, Javaux J, Mesnil C, Sabatel C, Desmecht D, Lallemand F, Martinive P, Hammad H, Guilliams M, Dewals B, Vanderplasschen A, Lambrecht BN, Bureau F, Gillet L.

Nat Immunol. 2017 Dec;18(12):1310-1320. doi: 10.1038/ni.3857. Epub 2017 Oct 16. Erratum in: Nat Immunol. 2018 Sep;19(9):1035.


Proteomic and Functional Analyses of the Virion Transmembrane Proteome of Cyprinid Herpesvirus 3.

Vancsok C, Peñaranda MMD, Raj VS, Leroy B, Jazowiecka-Rakus J, Boutier M, Gao Y, Wilkie GS, Suárez NM, Wattiez R, Gillet L, Davison AJ, Vanderplasschen AFC.

J Virol. 2017 Oct 13;91(21). pii: e01209-17. doi: 10.1128/JVI.01209-17. Print 2017 Nov 1.


A better scoring model for de novo peptide sequencing: the symmetric difference between explained and measured masses.

Tschager T, Rösch S, Gillet L, Widmayer P.

Algorithms Mol Biol. 2017 May 11;12:12. doi: 10.1186/s13015-017-0104-1. eCollection 2017.


The Major Envelope Glycoprotein of Murid Herpesvirus 4 Promotes Sexual Transmission.

Zeippen C, Javaux J, Xiao X, Ledecq M, Mast J, Farnir F, Vanderplasschen A, Stevenson P, Gillet L.

J Virol. 2017 Jun 9;91(13). pii: e00235-17. doi: 10.1128/JVI.00235-17. Print 2017 Jul 1.


Exposure to Bacterial CpG DNA Protects from Airway Allergic Inflammation by Expanding Regulatory Lung Interstitial Macrophages.

Sabatel C, Radermecker C, Fievez L, Paulissen G, Chakarov S, Fernandes C, Olivier S, Toussaint M, Pirottin D, Xiao X, Quatresooz P, Sirard JC, Cataldo D, Gillet L, Bouabe H, Desmet CJ, Ginhoux F, Marichal T, Bureau F.

Immunity. 2017 Mar 21;46(3):457-473. doi: 10.1016/j.immuni.2017.02.016.


A multicenter study benchmarks software tools for label-free proteome quantification.

Navarro P, Kuharev J, Gillet LC, Bernhardt OM, MacLean B, Röst HL, Tate SA, Tsou CC, Reiter L, Distler U, Rosenberger G, Perez-Riverol Y, Nesvizhskii AI, Aebersold R, Tenzer S.

Nat Biotechnol. 2016 Nov;34(11):1130-1136. doi: 10.1038/nbt.3685. Epub 2016 Oct 3.


Cryopreservation of chicken primordial germ cells by vitrification and slow freezing: A comparative study.

Tonus C, Connan D, Waroux O, Vandenhove B, Wayet J, Gillet L, Desmecht D, Antoine N, Ectors FJ, Grobet L.

Theriogenology. 2017 Jan 15;88:197-206. doi: 10.1016/j.theriogenology.2016.09.022. Epub 2016 Sep 21.


Lung-resident eosinophils represent a distinct regulatory eosinophil subset.

Mesnil C, Raulier S, Paulissen G, Xiao X, Birrell MA, Pirottin D, Janss T, Starkl P, Ramery E, Henket M, Schleich FN, Radermecker M, Thielemans K, Gillet L, Thiry M, Belvisi MG, Louis R, Desmet C, Marichal T, Bureau F.

J Clin Invest. 2016 Sep 1;126(9):3279-95. doi: 10.1172/JCI85664. Epub 2016 Aug 22.


TRIC: an automated alignment strategy for reproducible protein quantification in targeted proteomics.

Röst HL, Liu Y, D'Agostino G, Zanella M, Navarro P, Rosenberger G, Collins BC, Gillet L, Testa G, Malmström L, Aebersold R.

Nat Methods. 2016 Sep;13(9):777-83. doi: 10.1038/nmeth.3954. Epub 2016 Aug 1.


No Evidence of Herpesvirus Infection in West Highland White Terriers With Canine Idiopathic Pulmonary Fibrosis.

Roels E, Dourcy M, Holopainen S, Rajamäki MM, Gillet L, Ehlers B, Clercx C.

Vet Pathol. 2016 Nov;53(6):1210-1212. Epub 2016 Apr 22.


Mass Spectrometry Applied to Bottom-Up Proteomics: Entering the High-Throughput Era for Hypothesis Testing.

Gillet LC, Leitner A, Aebersold R.

Annu Rev Anal Chem (Palo Alto Calif). 2016 Jun 12;9(1):449-72. doi: 10.1146/annurev-anchem-071015-041535. Epub 2016 Mar 30. Review.


Structural Proteomics of Herpesviruses.

Leroy B, Gillet L, Vanderplasschen A, Wattiez R.

Viruses. 2016 Feb 12;8(2). pii: E50. doi: 10.3390/v8020050. Review.


Deletion of Murid Herpesvirus 4 ORF63 Affects the Trafficking of Incoming Capsids toward the Nucleus.

Latif MB, Machiels B, Xiao X, Mast J, Vanderplasschen A, Gillet L.

J Virol. 2015 Dec 16;90(5):2455-72. doi: 10.1128/JVI.02942-15.


Bovine Herpesvirus 4 Modulates Its β-1,6-N-Acetylglucosaminyltransferase Activity through Alternative Splicing.

Lété C, Markine-Goriaynoff N, Machiels B, Pang PC, Xiao X, Canis K, Suzuki M, Fukuda M, Dell A, Haslam SM, Vanderplasschen A, Gillet L.

J Virol. 2015 Dec 9;90(4):2039-51. doi: 10.1128/JVI.01722-15. Print 2016 Feb 15.


Voltage-gated sodium channels and cancer: is excitability their primary role?

Roger S, Gillet L, Le Guennec JY, Besson P.

Front Pharmacol. 2015 Jul 29;6:152. doi: 10.3389/fphar.2015.00152. eCollection 2015. Review.


Host entry by gamma-herpesviruses--lessons from animal viruses?

Gillet L, Frederico B, Stevenson PG.

Curr Opin Virol. 2015 Dec;15:34-40. doi: 10.1016/j.coviro.2015.07.007. Epub 2015 Jul 31. Review.


The Interferon-Inducible Mouse Apolipoprotein L9 and Prohibitins Cooperate to Restrict Theiler's Virus Replication.

Kreit M, Vertommen D, Gillet L, Michiels T.

PLoS One. 2015 Jul 21;10(7):e0133190. doi: 10.1371/journal.pone.0133190. eCollection 2015.


An open-source computational and data resource to analyze digital maps of immunopeptidomes.

Caron E, Espona L, Kowalewski DJ, Schuster H, Ternette N, Alpízar A, Schittenhelm RB, Ramarathinam SH, Lindestam Arlehamn CS, Chiek Koh C, Gillet LC, Rabsteyn A, Navarro P, Kim S, Lam H, Sturm T, Marcilla M, Sette A, Campbell DS, Deutsch EW, Moritz RL, Purcell AW, Rammensee HG, Stevanovic S, Aebersold R.

Elife. 2015 Jul 8;4. doi: 10.7554/eLife.07661.


Absolute Proteome Composition and Dynamics during Dormancy and Resuscitation of Mycobacterium tuberculosis.

Schubert OT, Ludwig C, Kogadeeva M, Zimmermann M, Rosenberger G, Gengenbacher M, Gillet LC, Collins BC, Röst HL, Kaufmann SH, Sauer U, Aebersold R.

Cell Host Microbe. 2015 Jul 8;18(1):96-108. doi: 10.1016/j.chom.2015.06.001. Epub 2015 Jun 18.


Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps.

Guo T, Kouvonen P, Koh CC, Gillet LC, Wolski WE, Röst HL, Rosenberger G, Collins BC, Blum LC, Gillessen S, Joerger M, Jochum W, Aebersold R.

Nat Med. 2015 Apr;21(4):407-13. doi: 10.1038/nm.3807. Epub 2015 Mar 2.


The α2,3-sialyltransferase encoded by myxoma virus is a virulence factor that contributes to immunosuppression.

Boutard B, Vankerckhove S, Markine-Goriaynoff N, Sarlet M, Desmecht D, McFadden G, Vanderplasschen A, Gillet L.

PLoS One. 2015 Feb 23;10(2):e0118806. doi: 10.1371/journal.pone.0118806. eCollection 2015.


Building high-quality assay libraries for targeted analysis of SWATH MS data.

Schubert OT, Gillet LC, Collins BC, Navarro P, Rosenberger G, Wolski WE, Lam H, Amodei D, Mallick P, MacLean B, Aebersold R.

Nat Protoc. 2015 Mar;10(3):426-41. doi: 10.1038/nprot.2015.015. Epub 2015 Feb 12.


Quantitative variability of 342 plasma proteins in a human twin population.

Liu Y, Buil A, Collins BC, Gillet LC, Blum LC, Cheng LY, Vitek O, Mouritsen J, Lachance G, Spector TD, Dermitzakis ET, Aebersold R.

Mol Syst Biol. 2015 Feb 4;11(1):786. doi: 10.15252/msb.20145728.


Reproducible and consistent quantification of the Saccharomyces cerevisiae proteome by SWATH-mass spectrometry.

Selevsek N, Chang CY, Gillet LC, Navarro P, Bernhardt OM, Reiter L, Cheng LY, Vitek O, Aebersold R.

Mol Cell Proteomics. 2015 Mar;14(3):739-49. doi: 10.1074/mcp.M113.035550. Epub 2015 Jan 5.


Ranolazine inhibits NaV1.5-mediated breast cancer cell invasiveness and lung colonization.

Driffort V, Gillet L, Bon E, Marionneau-Lambot S, Oullier T, Joulin V, Collin C, Pagès JC, Jourdan ML, Chevalier S, Bougnoux P, Le Guennec JY, Besson P, Roger S.

Mol Cancer. 2014 Dec 11;13:264. doi: 10.1186/1476-4598-13-264.


Phosphoproteomic analyses reveal novel cross-modulation mechanisms between two signaling pathways in yeast.

Vaga S, Bernardo-Faura M, Cokelaer T, Maiolica A, Barnes CA, Gillet LC, Hegemann B, van Drogen F, Sharifian H, Klipp E, Peter M, Saez-Rodriguez J, Aebersold R.

Mol Syst Biol. 2014 Dec 9;10:767. doi: 10.15252/msb.20145112.


Long term-cultured and cryopreserved primordial germ cells from various chicken breeds retain high proliferative potential and gonadal colonisation competency.

Tonus C, Cloquette K, Ectors F, Piret J, Gillet L, Antoine N, Desmecht D, Vanderplasschen A, Waroux O, Grobet L.

Reprod Fertil Dev. 2016 Apr;28(5):628-39. doi: 10.1071/RD14194.


Cardiac-specific ablation of synapse-associated protein SAP97 in mice decreases potassium currents but not sodium current.

Gillet L, Rougier JS, Shy D, Sonntag S, Mougenot N, Essers M, Shmerling D, Balse E, Hatem SN, Abriel H.

Heart Rhythm. 2015 Jan;12(1):181-92. doi: 10.1016/j.hrthm.2014.09.057. Epub 2014 Nov 18.


Targeting the sodium channel NaV1.5 to specific membrane compartments of cardiac cells: not a simple task!

Shy D, Gillet L, Abriel H.

Circ Res. 2014 Nov 7;115(11):901-3. doi: 10.1161/CIRCRESAHA.114.305305. No abstract available.


Elucidating sodium channel NaV1.5 clustering in cardiac myocytes using super-resolution techniques.

Gillet L, Shy D, Abriel H.

Cardiovasc Res. 2014 Nov 1;104(2):231-3. doi: 10.1093/cvr/cvu221. Epub 2014 Oct 23. No abstract available.


Suppression of PPARβ, and DHA treatment, inhibit NaV1.5 and NHE-1 pro-invasive activities.

Wannous R, Bon E, Gillet L, Chamouton J, Weber G, Brisson L, Goré J, Bougnoux P, Besson P, Roger S, Chevalier S.

Pflugers Arch. 2015 Jun;467(6):1249-59. doi: 10.1007/s00424-014-1573-4. Epub 2014 Jul 15.


PDZ domain-binding motif regulates cardiomyocyte compartment-specific NaV1.5 channel expression and function.

Shy D, Gillet L, Ogrodnik J, Albesa M, Verkerk AO, Wolswinkel R, Rougier JS, Barc J, Essers MC, Syam N, Marsman RF, van Mil AM, Rotman S, Redon R, Bezzina CR, Remme CA, Abriel H.

Circulation. 2014 Jul 8;130(2):147-60. doi: 10.1161/CIRCULATIONAHA.113.007852. Epub 2014 Jun 3.


Glycoproteomic analysis of prostate cancer tissues by SWATH mass spectrometry discovers N-acylethanolamine acid amidase and protein tyrosine kinase 7 as signatures for tumor aggressiveness.

Liu Y, Chen J, Sethi A, Li QK, Chen L, Collins B, Gillet LC, Wollscheid B, Zhang H, Aebersold R.

Mol Cell Proteomics. 2014 Jul;13(7):1753-68. doi: 10.1074/mcp.M114.038273. Epub 2014 Apr 16.

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