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Items: 1 to 50 of 247

1.

Greenland sled dogs at risk of extinction.

Sonne C, Langebæk R, Dietz R, Andersen-Ranberg E, Houser G, Hansen AJ, Sinding MS, Olsen MT, Egevang C, Gilbert MTP, Meldgaard M.

Science. 2018 Jun 8;360(6393):1080. doi: 10.1126/science.aat9578. No abstract available.

PMID:
29880678
2.

Debugging diversity - a pan-continental exploration of the potential of terrestrial blood-feeding leeches as a vertebrate monitoring tool.

Schnell IB, Bohmann K, Schultze SE, Richter SR, Murray DC, Sinding MS, Bass D, Cadle JE, Campbell MJ, Dolch R, Edwards DP, Gray TNE, Hansen T, Hoa ANQ, Noer CL, Heise-Pavlov S, Sander Pedersen AF, Ramamonjisoa JC, Siddall ME, Tilker A, Traeholt C, Wilkinson N, Woodcock P, Yu DW, Bertelsen MF, Bunce M, Gilbert MTP.

Mol Ecol Resour. 2018 Jun 7. doi: 10.1111/1755-0998.12912. [Epub ahead of print]

PMID:
29877042
3.

Ancient genomes from Iceland reveal the making of a human population.

Ebenesersdóttir SS, Sandoval-Velasco M, Gunnarsdóttir ED, Jagadeesan A, Guðmundsdóttir VB, Thordardóttir EL, Einarsdóttir MS, Moore KHS, Sigurðsson Á, Magnúsdóttir DN, Jónsson H, Snorradóttir S, Hovig E, Møller P, Kockum I, Olsson T, Alfredsson L, Hansen TF, Werge T, Cavalleri GL, Gilbert E, Lalueza-Fox C, Walser JW 3rd, Kristjánsdóttir S, Gopalakrishnan S, Árnadóttir L, Magnússon ÓÞ, Gilbert MTP, Stefánsson K, Helgason A.

Science. 2018 Jun 1;360(6392):1028-1032. doi: 10.1126/science.aar2625.

PMID:
29853688
4.

Recent Asian origin of chytrid fungi causing global amphibian declines.

O'Hanlon SJ, Rieux A, Farrer RA, Rosa GM, Waldman B, Bataille A, Kosch TA, Murray KA, Brankovics B, Fumagalli M, Martin MD, Wales N, Alvarado-Rybak M, Bates KA, Berger L, Böll S, Brookes L, Clare F, Courtois EA, Cunningham AA, Doherty-Bone TM, Ghosh P, Gower DJ, Hintz WE, Höglund J, Jenkinson TS, Lin CF, Laurila A, Loyau A, Martel A, Meurling S, Miaud C, Minting P, Pasmans F, Schmeller DS, Schmidt BR, Shelton JMG, Skerratt LF, Smith F, Soto-Azat C, Spagnoletti M, Tessa G, Toledo LF, Valenzuela-Sánchez A, Verster R, Vörös J, Webb RJ, Wierzbicki C, Wombwell E, Zamudio KR, Aanensen DM, James TY, Gilbert MTP, Weldon C, Bosch J, Balloux F, Garner TWJ, Fisher MC.

Science. 2018 May 11;360(6389):621-627. doi: 10.1126/science.aar1965.

PMID:
29748278
5.

Mind the gut: genomic insights to population divergence and gut microbial composition of two marine keystone species.

Fietz K, Rye Hintze CO, Skovrind M, Kjærgaard Nielsen T, Limborg MT, Krag MA, Palsbøll PJ, Hestbjerg Hansen L, Rask Møller P, Gilbert MTP.

Microbiome. 2018 May 2;6(1):82. doi: 10.1186/s40168-018-0467-7.

6.

Earth BioGenome Project: Sequencing life for the future of life.

Lewin HA, Robinson GE, Kress WJ, Baker WJ, Coddington J, Crandall KA, Durbin R, Edwards SV, Forest F, Gilbert MTP, Goldstein MM, Grigoriev IV, Hackett KJ, Haussler D, Jarvis ED, Johnson WE, Patrinos A, Richards S, Castilla-Rubio JC, van Sluys MA, Soltis PS, Xu X, Yang H, Zhang G.

Proc Natl Acad Sci U S A. 2018 Apr 24;115(17):4325-4333. doi: 10.1073/pnas.1720115115.

PMID:
29686065
7.

Using DNA metabarcoding for simultaneous inference of common vampire bat diet and population structure.

Bohmann K, Gopalakrishnan S, Nielsen M, Nielsen LDSB, Jones G, Streicker DG, Gilbert MTP.

Mol Ecol Resour. 2018 Apr 19. doi: 10.1111/1755-0998.12891. [Epub ahead of print]

PMID:
29673092
8.

Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia).

Holt C, Campbell M, Keays DA, Edelman N, Kapusta A, Maclary E, T Domyan E, Suh A, Warren WC, Yandell M, Gilbert MTP, Shapiro MD.

G3 (Bethesda). 2018 May 4;8(5):1391-1398. doi: 10.1534/g3.117.300443.

9.

Applied Hologenomics: Feasibility and Potential in Aquaculture.

Limborg MT, Alberdi A, Kodama M, Roggenbuck M, Kristiansen K, Gilbert MTP.

Trends Biotechnol. 2018 Mar;36(3):252-264. doi: 10.1016/j.tibtech.2017.12.006. Epub 2018 Jan 31. Review.

PMID:
29395346
10.

Agriculture shapes the trophic niche of a bat preying on multiple pest arthropods across Europe: Evidence from DNA metabarcoding.

Aizpurua O, Budinski I, Georgiakakis P, Gopalakrishnan S, Ibañez C, Mata V, Rebelo H, Russo D, Szodoray-Parádi F, Zhelyazkova V, Zrncic V, Gilbert MTP, Alberdi A.

Mol Ecol. 2018 Feb;27(3):815-825. doi: 10.1111/mec.14474. Epub 2018 Jan 31.

PMID:
29290102
11.

Quantifying Temporal Genomic Erosion in Endangered Species.

Díez-Del-Molino D, Sánchez-Barreiro F, Barnes I, Gilbert MTP, Dalén L.

Trends Ecol Evol. 2018 Mar;33(3):176-185. doi: 10.1016/j.tree.2017.12.002. Epub 2017 Dec 27. Review.

PMID:
29289355
12.

Bat Biology, Genomes, and the Bat1K Project: To Generate Chromosome-Level Genomes for All Living Bat Species.

Teeling EC, Vernes SC, Dávalos LM, Ray DA, Gilbert MTP, Myers E; Bat1K Consortium.

Annu Rev Anim Biosci. 2018 Feb 15;6:23-46. doi: 10.1146/annurev-animal-022516-022811. Epub 2017 Nov 20.

PMID:
29166127
13.

Natural selection shaped the rise and fall of passenger pigeon genomic diversity.

Murray GGR, Soares AER, Novak BJ, Schaefer NK, Cahill JA, Baker AJ, Demboski JR, Doll A, Da Fonseca RR, Fulton TL, Gilbert MTP, Heintzman PD, Letts B, McIntosh G, O'Connell BL, Peck M, Pipes ML, Rice ES, Santos KM, Sohrweide AG, Vohr SH, Corbett-Detig RB, Green RE, Shapiro B.

Science. 2017 Nov 17;358(6365):951-954. doi: 10.1126/science.aao0960.

PMID:
29146814
14.

Genome-wide Ancestry and Demographic History of African-Descendant Maroon Communities from French Guiana and Suriname.

Fortes-Lima C, Gessain A, Ruiz-Linares A, Bortolini MC, Migot-Nabias F, Bellis G, Moreno-Mayar JV, Restrepo BN, Rojas W, Avendaño-Tamayo E, Bedoya G, Orlando L, Salas A, Helgason A, Gilbert MTP, Sikora M, Schroeder H, Dugoujon JM.

Am J Hum Genet. 2017 Nov 2;101(5):725-736. doi: 10.1016/j.ajhg.2017.09.021.

15.

Evolutionary History of Saber-Toothed Cats Based on Ancient Mitogenomics.

Paijmans JLA, Barnett R, Gilbert MTP, Zepeda-Mendoza ML, Reumer JWF, de Vos J, Zazula G, Nagel D, Baryshnikov GF, Leonard JA, Rohland N, Westbury MV, Barlow A, Hofreiter M.

Curr Biol. 2017 Nov 6;27(21):3330-3336.e5. doi: 10.1016/j.cub.2017.09.033. Epub 2017 Oct 19.

PMID:
29056454
16.

Whole-Genome Sequencing of African Dogs Provides Insights into Adaptations against Tropical Parasites.

Liu YH, Wang L, Xu T, Guo X, Li Y, Yin TT, Yang HC, Hu Y, Adeola AC, Sanke OJ, Otecko NO, Wang M, Ma Y, Charles OS, Sinding MS, Gopalakrishnan S, Alfredo Samaniego J, Hansen AJ, Fernandes C, Gaubert P, Budd J, Dawuda PM, Knispel Rueness E, Jiang L, Zhai W, Gilbert MTP, Peng MS, Qi X, Wang GD, Zhang YP.

Mol Biol Evol. 2018 Feb 1;35(2):287-298. doi: 10.1093/molbev/msx258.

PMID:
29040727
17.

An expanded mammal mitogenome dataset from Southeast Asia.

Mohd Salleh F, Ramos-Madrigal J, Peñaloza F, Liu S, Mikkel-Holger SS, Riddhi PP, Martins R, Lenz D, Fickel J, Roos C, Shamsir MS, Azman MS, Burton KL, Stephen JR, Wilting A, Gilbert MTP.

Gigascience. 2017 Aug 1;6(8):1-8. doi: 10.1093/gigascience/gix053.

18.

Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing.

Mak SST, Gopalakrishnan S, Carøe C, Geng C, Liu S, Sinding MS, Kuderna LFK, Zhang W, Fu S, Vieira FG, Germonpré M, Bocherens H, Fedorov S, Petersen B, Sicheritz-Pontén T, Marques-Bonet T, Zhang G, Jiang H, Gilbert MTP.

Gigascience. 2017 Aug 1;6(8):1-13. doi: 10.1093/gigascience/gix049.

19.

Connecting Earth observation to high-throughput biodiversity data.

Bush A, Sollmann R, Wilting A, Bohmann K, Cole B, Balzter H, Martius C, Zlinszky A, Calvignac-Spencer S, Cobbold CA, Dawson TP, Emerson BC, Ferrier S, Gilbert MTP, Herold M, Jones L, Leendertz FH, Matthews L, Millington JDA, Olson JR, Ovaskainen O, Raffaelli D, Reeve R, Rödel MO, Rodgers TW, Snape S, Visseren-Hamakers I, Vogler AP, White PCL, Wooster MJ, Yu DW.

Nat Ecol Evol. 2017 Jun 22;1(7):176. doi: 10.1038/s41559-017-0176.

PMID:
28812589
20.

The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics.

Gopalakrishnan S, Samaniego Castruita JA, Sinding MS, Kuderna LFK, Räikkönen J, Petersen B, Sicheritz-Ponten T, Larson G, Orlando L, Marques-Bonet T, Hansen AJ, Dalén L, Gilbert MTP.

BMC Genomics. 2017 Jun 29;18(1):495. doi: 10.1186/s12864-017-3883-3.

21.

An ‛Aukward' Tale: A Genetic Approach to Discover the Whereabouts of the Last Great Auks.

Thomas JE, Carvalho GR, Haile J, Martin MD, Castruita JAS, Niemann J, Sinding MS, Sandoval-Velasco M, Rawlence NJ, Fuller E, Fjeldså J, Hofreiter M, Stewart JR, Gilbert MTP, Knapp M.

Genes (Basel). 2017 Jun 15;8(6). pii: E164. doi: 10.3390/genes8060164.

22.

Draft genome of the fungus-growing termite pathogenic fungus Ophiocordyceps bispora (Ophiocordycipitaceae, Hypocreales, Ascomycota).

Conlon BH, Mitchell J, de Beer ZW, Carøe C, Gilbert MT, Eilenberg J, Poulsen M, de Fine Licht HH.

Data Brief. 2017 Mar 8;11:537-542. doi: 10.1016/j.dib.2017.02.051. eCollection 2017 Apr.

23.

Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution.

Tanner AR, Fuchs D, Winkelmann IE, Gilbert MT, Pankey MS, Ribeiro ÂM, Kocot KM, Halanych KM, Oakley TH, da Fonseca RR, Pisani D, Vinther J.

Proc Biol Sci. 2017 Mar 15;284(1850). pii: 20162818. doi: 10.1098/rspb.2016.2818.

24.

Documenting DNA in the dust.

Gilbert MT.

Mol Ecol. 2017 Feb;26(4):969-971. doi: 10.1111/mec.13944.

PMID:
28239926
25.

Functional roles of Aves class-specific cis-regulatory elements on macroevolution of bird-specific features.

Seki R, Li C, Fang Q, Hayashi S, Egawa S, Hu J, Xu L, Pan H, Kondo M, Sato T, Matsubara H, Kamiyama N, Kitajima K, Saito D, Liu Y, Gilbert MT, Zhou Q, Xu X, Shiroishi T, Irie N, Tamura K, Zhang G.

Nat Commun. 2017 Feb 6;8:14229. doi: 10.1038/ncomms14229.

26.

Eggshell palaeogenomics: Palaeognath evolutionary history revealed through ancient nuclear and mitochondrial DNA from Madagascan elephant bird (Aepyornis sp.) eggshell.

Grealy A, Phillips M, Miller G, Gilbert MTP, Rouillard JM, Lambert D, Bunce M, Haile J.

Mol Phylogenet Evol. 2017 Apr;109:151-163. doi: 10.1016/j.ympev.2017.01.005. Epub 2017 Jan 9.

PMID:
28089793
27.

Genome Sequence of a 5,310-Year-Old Maize Cob Provides Insights into the Early Stages of Maize Domestication.

Ramos-Madrigal J, Smith BD, Moreno-Mayar JV, Gopalakrishnan S, Ross-Ibarra J, Gilbert MTP, Wales N.

Curr Biol. 2016 Dec 5;26(23):3195-3201. doi: 10.1016/j.cub.2016.09.036. Epub 2016 Nov 17.

28.

Complete mitochondrial genomes of living and extinct pigeons revise the timing of the columbiform radiation.

Soares AE, Novak BJ, Haile J, Heupink TH, Fjeldså J, Gilbert MT, Poinar H, Church GM, Shapiro B.

BMC Evol Biol. 2016 Oct 26;16(1):230.

29.

Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes.

Sánchez Barreiro F, Vieira FG, Martin MD, Haile J, Gilbert MT, Wales N.

Mol Ecol Resour. 2017 Mar;17(2):209-220. doi: 10.1111/1755-0998.12610. Epub 2016 Nov 7.

PMID:
27762072
30.

Mitochondrial DNA from the eradicated European Plasmodium vivax and P. falciparum from 70-year-old slides from the Ebro Delta in Spain.

Gelabert P, Sandoval-Velasco M, Olalde I, Fregel R, Rieux A, Escosa R, Aranda C, Paaijmans K, Mueller I, Gilbert MT, Lalueza-Fox C.

Proc Natl Acad Sci U S A. 2016 Oct 11;113(41):11495-11500. Epub 2016 Sep 26.

31.

Further evidence of Chelonid herpesvirus 5 (ChHV5) latency: high levels of ChHV5 DNA detected in clinically healthy marine turtles.

Alfaro-Núñez A, Bojesen AM, Bertelsen MF, Wales N, Balazs GH, Gilbert MT.

PeerJ. 2016 Jul 27;4:e2274. doi: 10.7717/peerj.2274. eCollection 2016.

32.

Do Vertebrate Gut Metagenomes Confer Rapid Ecological Adaptation?

Alberdi A, Aizpurua O, Bohmann K, Zepeda-Mendoza ML, Gilbert MTP.

Trends Ecol Evol. 2016 Sep;31(9):689-699. doi: 10.1016/j.tree.2016.06.008. Epub 2016 Jul 21. Review.

PMID:
27453351
33.

Genome-culture coevolution promotes rapid divergence of killer whale ecotypes.

Foote AD, Vijay N, Ávila-Arcos MC, Baird RW, Durban JW, Fumagalli M, Gibbs RA, Hanson MB, Korneliussen TS, Martin MD, Robertson KM, Sousa VC, Vieira FG, Vinař T, Wade P, Worley KC, Excoffier L, Morin PA, Gilbert MT, Wolf JB.

Nat Commun. 2016 May 31;7:11693. doi: 10.1038/ncomms11693.

34.

Bone-associated gene evolution and the origin of flight in birds.

Machado JP, Johnson WE, Gilbert MT, Zhang G, Jarvis ED, O'Brien SJ, Antunes A.

BMC Genomics. 2016 May 18;17:371. doi: 10.1186/s12864-016-2681-7.

35.

DAMe: a toolkit for the initial processing of datasets with PCR replicates of double-tagged amplicons for DNA metabarcoding analyses.

Zepeda-Mendoza ML, Bohmann K, Carmona Baez A, Gilbert MT.

BMC Res Notes. 2016 May 3;9:255. doi: 10.1186/s13104-016-2064-9.

36.

The population genomic basis of geographic differentiation in North American common ragweed (Ambrosia artemisiifolia L.).

Martin MD, Olsen MT, Samaniego JA, Zimmer EA, Gilbert MTP.

Ecol Evol. 2016 May 5;6(11):3760-3771. doi: 10.1002/ece3.2143. eCollection 2016 Jun.

37.

Whole-Genome Identification, Phylogeny, and Evolution of the Cytochrome P450 Family 2 (CYP2) Subfamilies in Birds.

Almeida D, Maldonado E, Khan I, Silva L, Gilbert MT, Zhang G, Jarvis ED, O'Brien SJ, Johnson WE, Antunes A.

Genome Biol Evol. 2016 Apr 13;8(4):1115-31. doi: 10.1093/gbe/evw041.

38.

Genomic population structure of freshwater-resident and anadromous ide (Leuciscus idus) in north-western Europe.

Skovrind M, Olsen MT, Vieira FG, Pacheco G, Carl H, Gilbert MT, Møller PR.

Ecol Evol. 2016 Jan 22;6(4):1064-74. doi: 10.1002/ece3.1909. eCollection 2016 Feb. Erratum in: Ecol Evol. 2016 Mar;6(6):1898.

39.

Dose-dependent teratogenicity of the synthetic cannabinoid CP-55,940 in mice.

Gilbert MT, Sulik KK, Fish EW, Baker LK, Dehart DB, Parnell SE.

Neurotoxicol Teratol. 2016 Nov - Dec;58:15-22. doi: 10.1016/j.ntt.2015.12.004. Epub 2015 Dec 18.

40.

New insights on single-stranded versus double-stranded DNA library preparation for ancient DNA.

Wales N, Carøe C, Sandoval-Velasco M, Gamba C, Barnett R, Samaniego JA, Madrigal JR, Orlando L, Gilbert MT.

Biotechniques. 2015 Dec 1;59(6):368-71. doi: 10.2144/000114364. eCollection 2015 Dec.

41.

Genomic Characterization of a South American Phytophthora Hybrid Mandates Reassessment of the Geographic Origins of Phytophthora infestans.

Martin MD, Vieira FG, Ho SY, Wales N, Schubert M, Seguin-Orlando A, Ristaino JB, Gilbert MT.

Mol Biol Evol. 2016 Feb;33(2):478-91. doi: 10.1093/molbev/msv241. Epub 2015 Nov 17.

42.

Viral meningitis epidemics and a single, recent, recombinant and anthroponotic origin of swine vesicular disease virus.

Bruhn CA, Nielsen SC, Samaniego JA, Wadsworth J, Knowles NJ, Gilbert MT.

Evol Med Public Health. 2015 Oct 27;2015(1):289-303. doi: 10.1093/emph/eov026.

43.

Corrigendum: the microbiome of New World vultures.

Roggenbuck M, Schnell IB, Blom N, Bælum J, Bertelsen MF, Sicheritz-Pontén T, Sørensen SJ, Gilbert MT, Graves GR, Hansen LH.

Nat Commun. 2015 Oct 21;6:8774. doi: 10.1038/ncomms9774. No abstract available.

PMID:
26487547
44.

Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds.

Borges R, Khan I, Johnson WE, Gilbert MT, Zhang G, Jarvis ED, O'Brien SJ, Antunes A.

BMC Genomics. 2015 Oct 6;16:751. doi: 10.1186/s12864-015-1924-3.

45.

iDNA from terrestrial haematophagous leeches as a wildlife surveying and monitoring tool - prospects, pitfalls and avenues to be developed.

Schnell IB, Sollmann R, Calvignac-Spencer S, Siddall ME, Yu DW, Wilting A, Gilbert MT.

Front Zool. 2015 Oct 1;12:24. doi: 10.1186/s12983-015-0115-z. eCollection 2015. Review.

46.

Response to Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds".

Cracraft J, Houde P, Ho SY, Mindell DP, Fjeldså J, Lindow B, Edwards SV, Rahbek C, Mirarab S, Warnow T, Gilbert MT, Zhang G, Braun EL, Jarvis ED.

Science. 2015 Sep 25;349(6255):1460. doi: 10.1126/science.aab1578.

PMID:
26404820
47.

A Common Genetic Origin for Early Farmers from Mediterranean Cardial and Central European LBK Cultures.

Olalde I, Schroeder H, Sandoval-Velasco M, Vinner L, Lobón I, Ramirez O, Civit S, García Borja P, Salazar-García DC, Talamo S, María Fullola J, Xavier Oms F, Pedro M, Martínez P, Sanz M, Daura J, Zilhão J, Marquès-Bonet T, Gilbert MT, Lalueza-Fox C.

Mol Biol Evol. 2015 Dec;32(12):3132-42. doi: 10.1093/molbev/msv181. Epub 2015 Sep 2.

48.

Olfactory Receptor Subgenomes Linked with Broad Ecological Adaptations in Sauropsida.

Khan I, Yang Z, Maldonado E, Li C, Zhang G, Gilbert MT, Jarvis ED, O'Brien SJ, Johnson WE, Antunes A.

Mol Biol Evol. 2015 Nov;32(11):2832-43. doi: 10.1093/molbev/msv155. Epub 2015 Jul 28.

PMID:
26219582
49.

Odintifier--A computational method for identifying insertions of organellar origin from modern and ancient high-throughput sequencing data based on haplotype phasing.

Samaniego Castruita JA, Zepeda Mendoza ML, Barnett R, Wales N, Gilbert MT.

BMC Bioinformatics. 2015 Jul 28;16:232. doi: 10.1186/s12859-015-0682-1.

50.

A refined model of the genomic basis for phenotypic variation in vertebrate hemostasis.

Ribeiro ÂM, Zepeda-Mendoza ML, Bertelsen MF, Kristensen AT, Jarvis ED, Gilbert MT, da Fonseca RR.

BMC Evol Biol. 2015 Jun 30;15:124. doi: 10.1186/s12862-015-0409-y.

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