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Items: 1 to 50 of 464

1.

Draft Genome Sequence of Rhodococcus sp. Strain ATCC 49988, a Quinoline-Degrading Bacterium.

Gupta N, Skinner KA, Summers ZM, Edirisinghe JN, Faria JP, Marshall CW, Sharma A, Gottel NR, Gilbert JA, Henry CS, O'Loughlin EJ.

Microbiol Resour Announc. 2019 Jun 20;8(25). pii: e00403-19. doi: 10.1128/MRA.00403-19.

2.

Early-Career Scientists Shaping the World.

Cristea IM, Dorrestein PC, Eisen JA, Gilbert JA, Huber JA, Jansson JK, Knight R, Pollard KS, Raes J, Silver PA, Webster NS, Xu J.

mSystems. 2019 May 7;4(3). pii: e00196-19. doi: 10.1128/mSystems.00196-19. No abstract available.

3.

Concurrent measurement of microbiome and allergens in the air of bedrooms of allergy disease patients in the Chicago area.

Richardson M, Gottel N, Gilbert JA, Gordon J, Gandhi P, Reboulet R, Hampton-Marcell JT.

Microbiome. 2019 Jun 3;7(1):82. doi: 10.1186/s40168-019-0695-5.

4.

Community ecology as a framework for human microbiome research.

Gilbert JA, Lynch SV.

Nat Med. 2019 Jun;25(6):884-889. doi: 10.1038/s41591-019-0464-9. Epub 2019 May 27. Review.

PMID:
31133693
5.

Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary.

Marotz C, Sharma A, Humphrey G, Gottel N, Daum C, Gilbert JA, Eloe-Fadrosh E, Knight R.

Biotechniques. 2019 May 24. doi: 10.2144/btn-2018-0192. [Epub ahead of print]

6.

A Simple Microbiome in the European Common Cuttlefish, Sepia officinalis.

Lutz HL, Ramírez-Puebla ST, Abbo L, Durand A, Schlundt C, Gottel NR, Sjaarda AK, Hanlon RT, Gilbert JA, Mark Welch JL.

mSystems. 2019 May 14;4(4). pii: e00177-19. doi: 10.1128/mSystems.00177-19.

7.

A Simple Microbiome in the European Common Cuttlefish, Sepia officinalis.

Lutz HL, Ramírez-Puebla ST, Abbo L, Durand A, Schlundt C, Gottel NR, Sjaarda AK, Hanlon RT, Gilbert JA, Mark Welch JL.

mSystems. 2019 May 14;4(4). pii: e00177-19. doi: 10.1128/mSystems.00177-19. eCollection 2019 Jul-Aug.

8.

Sex-specific effects of microbiome perturbations on cerebral Aβ amyloidosis and microglia phenotypes.

Dodiya HB, Kuntz T, Shaik SM, Baufeld C, Leibowitz J, Zhang X, Gottel N, Zhang X, Butovsky O, Gilbert JA, Sisodia SS.

J Exp Med. 2019 May 16. pii: jem.20182386. doi: 10.1084/jem.20182386. [Epub ahead of print]

PMID:
31097468
9.

Improving duodenoscope safety: a work in progress.

Gilbert JA.

Lancet Gastroenterol Hepatol. 2019 Jul;4(7):497. doi: 10.1016/S2468-1253(19)30143-8. Epub 2019 May 8. No abstract available.

PMID:
31076333
10.

Consent insufficient for data release-Response.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 May 3;364(6439):446. doi: 10.1126/science.aax7509. No abstract available.

PMID:
31048484
11.

Longitudinal homogenization of the microbiome between both occupants and the built environment in a cohort of United States Air Force Cadets.

Sharma A, Richardson M, Cralle L, Stamper CE, Maestre JP, Stearns-Yoder KA, Postolache TT, Bates KL, Kinney KA, Brenner LA, Lowry CA, Gilbert JA, Hoisington AJ.

Microbiome. 2019 May 2;7(1):70. doi: 10.1186/s40168-019-0686-6.

12.

Agricultural Risk Factors Influence Microbial Ecology in Honghu Lake.

Han M, Dsouza M, Zhou C, Li H, Zhang J, Chen C, Yao Q, Zhong C, Zhou H, Gilbert JA, Wang Z, Ning K.

Genomics Proteomics Bioinformatics. 2019 Feb;17(1):76-90. doi: 10.1016/j.gpb.2018.04.008. Epub 2019 Apr 23.

13.

Microbial and metabolic succession on common building materials under high humidity conditions.

Lax S, Cardona C, Zhao D, Winton VJ, Goodney G, Gao P, Gottel N, Hartmann EM, Henry C, Thomas PM, Kelley ST, Stephens B, Gilbert JA.

Nat Commun. 2019 Apr 16;10(1):1767. doi: 10.1038/s41467-019-09764-z.

14.

Impacts of indoor surface finishes on bacterial viability.

Hu J, Ben Maamar S, Glawe AJ, Gottel N, Gilbert JA, Hartmann EM.

Indoor Air. 2019 Jul;29(4):551-562. doi: 10.1111/ina.12558. Epub 2019 May 13.

PMID:
30980566
15.

Genomic Characterization and Virulence Potential of Two Fusarium oxysporum Isolates Cultured from the International Space Station.

Urbaniak C, van Dam P, Zaborin A, Zaborina O, Gilbert JA, Torok T, Wang CCC, Venkateswaran K.

mSystems. 2019 Mar 19;4(2). pii: e00345-18. doi: 10.1128/mSystems.00345-18. eCollection 2019 Mar-Apr.

16.

Pharmacomicrobiomics: The Holy Grail to Variability in Drug Response?

Sharma A, Buschmann MM, Gilbert JA.

Clin Pharmacol Ther. 2019 Apr 2. doi: 10.1002/cpt.1437. [Epub ahead of print]

PMID:
30937887
17.

Longitudinal Microbiome Composition and Stability Correlate with Increased Weight and Length of Very-Low-Birth-Weight Infants.

Yee AL, Miller E, Dishaw LJ, Gordon JM, Ji M, Dutra S, Ho TTB, Gilbert JA, Groer M.

mSystems. 2019 Feb 26;4(1). pii: e00229-18. doi: 10.1128/mSystems.00229-18. eCollection 2019 Jan-Feb.

18.

Biological soil crusts inhibit seed germination in a temperate pine barren ecosystem.

Gilbert JA, Corbin JD.

PLoS One. 2019 Feb 20;14(2):e0212466. doi: 10.1371/journal.pone.0212466. eCollection 2019.

19.

Toward unrestricted use of public genomic data.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 Jan 25;363(6425):350-352. doi: 10.1126/science.aaw1280. No abstract available.

20.

Enteric dysbiosis and fecal calprotectin expression in premature infants.

Ho TTB, Groer MW, Kane B, Yee AL, Torres BA, Gilbert JA, Maheshwari A.

Pediatr Res. 2019 Feb;85(3):361-368. doi: 10.1038/s41390-018-0254-y. Epub 2018 Dec 10.

21.

Bacterial and Archaeal Viruses of Himalayan Hot Springs at Manikaran Modulate Host Genomes.

Sharma A, Schmidt M, Kiesel B, Mahato NK, Cralle L, Singh Y, Richnow HH, Gilbert JA, Arnold W, Lal R.

Front Microbiol. 2018 Dec 14;9:3095. doi: 10.3389/fmicb.2018.03095. eCollection 2018.

22.

GABA-modulating bacteria of the human gut microbiota.

Strandwitz P, Kim KH, Terekhova D, Liu JK, Sharma A, Levering J, McDonald D, Dietrich D, Ramadhar TR, Lekbua A, Mroue N, Liston C, Stewart EJ, Dubin MJ, Zengler K, Knight R, Gilbert JA, Clardy J, Lewis K.

Nat Microbiol. 2019 Mar;4(3):396-403. doi: 10.1038/s41564-018-0307-3. Epub 2018 Dec 10.

23.

Gut microbial features can predict host phenotype response to protein deficiency.

Navarro G, Sharma A, Dugas LR, Forrester T, Gilbert JA, Layden BT.

Physiol Rep. 2018 Dec;6(23):e13932. doi: 10.14814/phy2.13932.

24.

Decreased microbial co-occurrence network stability and SCFA receptor level correlates with obesity in African-origin women.

Dugas LR, Bernabé BP, Priyadarshini M, Fei N, Park SJ, Brown L, Plange-Rhule J, Nelson D, Toh EC, Gao X, Dong Q, Sun J, Kliethermes S, Gottel N, Luke A, Gilbert JA, Layden BT.

Sci Rep. 2018 Nov 20;8(1):17135. doi: 10.1038/s41598-018-35230-9.

25.

Existing Climate Change Will Lead to Pronounced Shifts in the Diversity of Soil Prokaryotes.

Ladau J, Shi Y, Jing X, He JS, Chen L, Lin X, Fierer N, Gilbert JA, Pollard KS, Chu H.

mSystems. 2018 Oct 23;3(5). pii: e00167-18. doi: 10.1128/mSystems.00167-18. eCollection 2018 Sep-Oct.

26.

Phylogenetic imprint of woody plants on the soil mycobiome in natural mountain forests of eastern China.

Yang T, Tedersoo L, Soltis PS, Soltis DE, Gilbert JA, Sun M, Shi Y, Wang H, Li Y, Zhang J, Chen Z, Lin H, Zhao Y, Fu C, Chu H.

ISME J. 2019 Mar;13(3):686-697. doi: 10.1038/s41396-018-0303-x. Epub 2018 Oct 23.

PMID:
30353037
27.

The chemodiversity of paddy soil dissolved organic matter correlates with microbial community at continental scales.

Li HY, Wang H, Wang HT, Xin PY, Xu XH, Ma Y, Liu WP, Teng CY, Jiang CL, Lou LP, Arnold W, Cralle L, Zhu YG, Chu JF, Gilbert JA, Zhang ZJ.

Microbiome. 2018 Oct 19;6(1):187. doi: 10.1186/s40168-018-0561-x.

28.

Preserving microbial diversity.

Bello MGD, Knight R, Gilbert JA, Blaser MJ.

Science. 2018 Oct 5;362(6410):33-34. doi: 10.1126/science.aau8816. No abstract available.

PMID:
30287652
29.

Dichotomous development of the gut microbiome in preterm infants.

Ho TTB, Groer MW, Kane B, Yee AL, Torres BA, Gilbert JA, Maheshwari A.

Microbiome. 2018 Sep 12;6(1):157. doi: 10.1186/s40168-018-0547-8.

30.

Microbial exposure and human health.

Sharma A, Gilbert JA.

Curr Opin Microbiol. 2018 Aug;44:79-87. doi: 10.1016/j.mib.2018.08.003. Epub 2018 Sep 5. Review.

PMID:
30195150
31.

Verily project releases millions of factory-reared mosquitoes.

Gilbert JA, Melton L.

Nat Biotechnol. 2018 Sep 6;36(9):781-782. doi: 10.1038/nbt0918-781a. No abstract available.

PMID:
30188519
32.

Sepsis care bundles: a work in progress.

Gilbert JA.

Lancet Respir Med. 2018 Nov;6(11):821-823. doi: 10.1016/S2213-2600(18)30362-X. Epub 2018 Aug 24. No abstract available.

PMID:
30150012
33.

Gut microbiota composition and butyrate production in children affected by non-IgE-mediated cow's milk allergy.

Berni Canani R, De Filippis F, Nocerino R, Paparo L, Di Scala C, Cosenza L, Della Gatta G, Calignano A, De Caro C, Laiola M, Gilbert JA, Ercolini D.

Sci Rep. 2018 Aug 21;8(1):12500. doi: 10.1038/s41598-018-30428-3.

34.

Microbiology of the built environment.

Gilbert JA, Stephens B.

Nat Rev Microbiol. 2018 Nov;16(11):661-670. doi: 10.1038/s41579-018-0065-5. Review.

PMID:
30127345
35.

Gut microbiota, short chain fatty acids, and obesity across the epidemiologic transition: the METS-Microbiome study protocol.

Dugas LR, Lie L, Plange-Rhule J, Bedu-Addo K, Bovet P, Lambert EV, Forrester TE, Luke A, Gilbert JA, Layden BT.

BMC Public Health. 2018 Aug 6;18(1):978. doi: 10.1186/s12889-018-5879-6.

36.

Genetic correlation network prediction of forest soil microbial functional organization.

Ma B, Zhao K, Lv X, Su W, Dai Z, Gilbert JA, Brookes PC, Faust K, Xu J.

ISME J. 2018 Oct;12(10):2492-2505. doi: 10.1038/s41396-018-0232-8. Epub 2018 Jul 25.

37.

Dysbiosis in Children Born by Caesarean Section.

Salas Garcia MC, Yee AL, Gilbert JA, Dsouza M.

Ann Nutr Metab. 2018;73 Suppl 3:24-32. doi: 10.1159/000492168. Epub 2018 Jul 24. Review.

38.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Jul 6;36(7):660. doi: 10.1038/nbt0718-660a. No abstract available.

PMID:
29979671
39.

Metagenomic analysis of basal ice from an Alaskan glacier.

Kayani MUR, Doyle SM, Sangwan N, Wang G, Gilbert JA, Christner BC, Zhu TF.

Microbiome. 2018 Jul 5;6(1):123. doi: 10.1186/s40168-018-0505-5.

40.

Environmental Sources of Bacteria Differentially Influence Host-Associated Microbial Dynamics.

Cardona C, Lax S, Larsen P, Stephens B, Hampton-Marcell J, Edwardson CF, Henry C, Van Bonn B, Gilbert JA.

mSystems. 2018 May 29;3(3). pii: e00052-18. doi: 10.1128/mSystems.00052-18. eCollection 2018 May-Jun.

41.

American Gut: an Open Platform for Citizen Science Microbiome Research.

McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q; American Gut Consortium , Knight R.

mSystems. 2018 May 15;3(3). pii: e00031-18. doi: 10.1128/mSystems.00031-18. eCollection 2018 May-Jun.

42.

Salinity is a key factor driving the nitrogen cycling in the mangrove sediment.

Wang H, Gilbert JA, Zhu Y, Yang X.

Sci Total Environ. 2018 Aug 1;631-632:1342-1349. doi: 10.1016/j.scitotenv.2018.03.102. Epub 2018 Mar 28.

PMID:
29727958
43.

Earth Microbiome Project and Global Systems Biology.

Gilbert JA, Jansson JK, Knight R.

mSystems. 2018 Apr 10;3(3). pii: e00217-17. doi: 10.1128/mSystems.00217-17. eCollection 2018 May-Jun. No abstract available.

44.

Advancing towards precision medicine in ARDS.

Gilbert JA.

Lancet Respir Med. 2018 Jul;6(7):494-495. doi: 10.1016/S2213-2600(18)30156-5. Epub 2018 Apr 12. Review. No abstract available.

PMID:
29657094
45.

Current understanding of the human microbiome.

Gilbert JA, Blaser MJ, Caporaso JG, Jansson JK, Lynch SV, Knight R.

Nat Med. 2018 Apr 10;24(4):392-400. doi: 10.1038/nm.4517. Review.

PMID:
29634682
46.

Soil Bacterial Diversity Is Associated with Human Population Density in Urban Greenspaces.

Wang H, Cheng M, Dsouza M, Weisenhorn P, Zheng T, Gilbert JA.

Environ Sci Technol. 2018 May 1;52(9):5115-5124. doi: 10.1021/acs.est.7b06417. Epub 2018 Apr 12.

PMID:
29624051
47.

Current State of Knowledge on Implications of Gut Microbiome for Surgical Conditions.

Chen EB, Cason C, Gilbert JA, Ho KJ.

J Gastrointest Surg. 2018 Jun;22(6):1112-1123. doi: 10.1007/s11605-018-3755-4. Epub 2018 Apr 5.

48.

Ecological medicine.

Gilbert JA.

Environ Microbiol. 2018 Jun;20(6):1917-1919. doi: 10.1111/1462-2920.14115. Epub 2018 Apr 30. No abstract available.

PMID:
29614208
49.

Early-Career Systems Microbiology Scientists.

Gilbert JA.

mSystems. 2018 Mar 6;3(2). pii: e00002-18. doi: 10.1128/mSystems.00002-18. eCollection 2018 Mar-Apr. No abstract available.

50.

Effect of increasing glucocorticoids on asthma exacerbations.

Gilbert JA.

Lancet Respir Med. 2018 May;6(5):328. doi: 10.1016/S2213-2600(18)30118-8. Epub 2018 Mar 16. No abstract available.

PMID:
29555108

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