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Microbial Colonization of Germ-Free Mice Restores Neointimal Hyperplasia Development After Arterial Injury.

Chen EB, Shapiro KE, Wun K, Kuntz T, Theriault BR, Nooromid MJ, Leone VA, Harris KG, Jiang Q, Spedale M, Xiong L, Gilbert JA, Chang EB, Ho KJ.

J Am Heart Assoc. 2020 Mar 3;9(5):e013496. doi: 10.1161/JAHA.119.013496. Epub 2020 Feb 24.


Effect of fructans, prebiotics and fibres on the human gut microbiome assessed by 16S rRNA-based approaches: a review.

Swanson KS, de Vos WM, Martens EC, Gilbert JA, Menon RS, Soto-Vaca A, Hautvast J, Meyer PD, Borewicz K, Vaughan EE, Slavin JL.

Benef Microbes. 2020 Feb 19:1-30. doi: 10.3920/BM2019.0082. [Epub ahead of print]


Precision medicine in perinatal depression in light of the human microbiome.

Peñalver Bernabé B, Maki PM, Dowty SM, Salas M, Cralle L, Shah Z, Gilbert JA.

Psychopharmacology (Berl). 2020 Feb 17. doi: 10.1007/s00213-019-05436-4. [Epub ahead of print] Review.


Microbiota composition modulates inflammation and neointimal hyperplasia after arterial angioplasty.

Cason CA, Kuntz TM, Chen EB, Wun K, Nooromid MJ, Xiong L, Gottel NR, Harris KG, Morton TC, Avram MJ, Chang EB, Gilbert JA, Ho KJ.

J Vasc Surg. 2020 Feb 4. pii: S0741-5214(19)31821-X. doi: 10.1016/j.jvs.2019.06.208. [Epub ahead of print]


Comparative Analysis of Gut Microbiota Following Changes in Training Volume Among Swimmers.

Hampton-Marcell JT, Eshoo TW, Cook MD, Gilbert JA, Horswill CA, Poretsky R.

Int J Sports Med. 2020 Jan 23. doi: 10.1055/a-1079-5450. [Epub ahead of print]


Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats.

Song SJ, Sanders JG, Delsuc F, Metcalf J, Amato K, Taylor MW, Mazel F, Lutz HL, Winker K, Graves GR, Humphrey G, Gilbert JA, Hackett SJ, White KP, Skeen HR, Kurtis SM, Withrow J, Braile T, Miller M, McCracken KG, Maley JM, Ezenwa VO, Williams A, Blanton JM, McKenzie VJ, Knight R.

mBio. 2020 Jan 7;11(1). pii: e02901-19. doi: 10.1128/mBio.02901-19.


Acknowledgment of Ad Hoc Reviewers.

Gilbert JA.

mSystems. 2019 Dec 17;4(6). pii: e00797-19. doi: 10.1128/mSystems.00797-19. No abstract available.


Immune Dysregulation in the Tonsillar Microenvironment of Periodic Fever, Aphthous Stomatitis, Pharyngitis, Adenitis (PFAPA) Syndrome.

Luu I, Sharma A, Guaderrama M, Peru M, Nation J, Page N, Carvalho D, Magit A, Jiang W, Leuin S, Bliss M, Bothwell M, Brigger M, Kearns D, Newbury R, Pransky S, Gilbert JA, Broderick L.

J Clin Immunol. 2019 Dec 5. doi: 10.1007/s10875-019-00724-2. [Epub ahead of print]


Ecology and Host Identity Outweigh Evolutionary History in Shaping the Bat Microbiome.

Lutz HL, Jackson EW, Webala PW, Babyesiza WS, Kerbis Peterhans JC, Demos TC, Patterson BD, Gilbert JA.

mSystems. 2019 Nov 12;4(6). pii: e00511-19. doi: 10.1128/mSystems.00511-19.


The Future of Microbiome-Based Therapeutics in Clinical Applications.

Sharma A, Das P, Buschmann M, Gilbert JA.

Clin Pharmacol Ther. 2020 Jan;107(1):123-128. doi: 10.1002/cpt.1677. Epub 2019 Nov 15. Review.


Analysis of gut microbiome, nutrition and immune status in autism spectrum disorder: a case-control study in Ecuador.

Zurita MF, Cárdenas PA, Sandoval ME, Peña MC, Fornasini M, Flores N, Monaco MH, Berding K, Donovan SM, Kuntz T, Gilbert JA, Baldeón ME.

Gut Microbes. 2019 Sep 18:1-12. doi: 10.1080/19490976.2019.1662260. [Epub ahead of print]


The Origin, Succession, and Predicted Metabolism of Bacterial Communities Associated with Leaf Decomposition.

Jackrel SL, Gilbert JA, Wootton JT.

mBio. 2019 Sep 3;10(5). pii: e01703-19. doi: 10.1128/mBio.01703-19.


Age and Mothers: Potent Influences of Children's Skin Microbiota.

Zhu T, Liu X, Kong FQ, Duan YY, Yee AL, Kim M, Galzote C, Gilbert JA, Quan ZX.

J Invest Dermatol. 2019 Dec;139(12):2497-2505.e6. doi: 10.1016/j.jid.2019.05.018. Epub 2019 Aug 13.


Microbial Similarity between Students in a Common Dormitory Environment Reveals the Forensic Potential of Individual Microbial Signatures.

Richardson M, Gottel N, Gilbert JA, Lax S.

mBio. 2019 Jul 30;10(4). pii: e01054-19. doi: 10.1128/mBio.01054-19.


Mice Fed an Obesogenic Western Diet, Administered Antibiotics, and Subjected to a Sterile Surgical Procedure Develop Lethal Septicemia with Multidrug-Resistant Pathobionts.

Hyoju SK, Zaborin A, Keskey R, Sharma A, Arnold W, van den Berg F, Kim SM, Gottel N, Bethel C, Charnot-Katsikas A, Jianxin P, Adriaansens C, Papazian E, Gilbert JA, Zaborina O, Alverdy JC.

mBio. 2019 Jul 30;10(4). pii: e00903-19. doi: 10.1128/mBio.00903-19.


The human microbiota is associated with cardiometabolic risk across the epidemiologic transition.

Fei N, Bernabé BP, Lie L, Baghdan D, Bedu-Addo K, Plange-Rhule J, Forrester TE, Lambert EV, Bovet P, Gottel N, Riesen W, Korte W, Luke A, Kliethermes SA, Layden BT, Gilbert JA, Dugas LR.

PLoS One. 2019 Jul 24;14(7):e0215262. doi: 10.1371/journal.pone.0215262. eCollection 2019.


Associations between fungal and bacterial microbiota of airways and asthma endotypes.

Sharma A, Laxman B, Naureckas ET, Hogarth DK, Sperling AI, Solway J, Ober C, Gilbert JA, White SR.

J Allergy Clin Immunol. 2019 Nov;144(5):1214-1227.e7. doi: 10.1016/j.jaci.2019.06.025. Epub 2019 Jul 3.


Quantifying and Understanding Well-to-Well Contamination in Microbiome Research.

Minich JJ, Sanders JG, Amir A, Humphrey G, Gilbert JA, Knight R.

mSystems. 2019 Jun 25;4(4). pii: e00186-19. doi: 10.1128/mSystems.00186-19.


Draft Genome Sequence of Rhodococcus sp. Strain ATCC 49988, a Quinoline-Degrading Bacterium.

Gupta N, Skinner KA, Summers ZM, Edirisinghe JN, Faria JP, Marshall CW, Sharma A, Gottel NR, Gilbert JA, Henry CS, O'Loughlin EJ.

Microbiol Resour Announc. 2019 Jun 20;8(25). pii: e00403-19. doi: 10.1128/MRA.00403-19.


Early-Career Scientists Shaping the World.

Cristea IM, Dorrestein PC, Eisen JA, Gilbert JA, Huber JA, Jansson JK, Knight R, Pollard KS, Raes J, Silver PA, Webster NS, Xu J.

mSystems. 2019 May 7;4(3). pii: e00196-19. doi: 10.1128/mSystems.00196-19. No abstract available.


Concurrent measurement of microbiome and allergens in the air of bedrooms of allergy disease patients in the Chicago area.

Richardson M, Gottel N, Gilbert JA, Gordon J, Gandhi P, Reboulet R, Hampton-Marcell JT.

Microbiome. 2019 Jun 3;7(1):82. doi: 10.1186/s40168-019-0695-5.


Community ecology as a framework for human microbiome research.

Gilbert JA, Lynch SV.

Nat Med. 2019 Jun;25(6):884-889. doi: 10.1038/s41591-019-0464-9. Epub 2019 May 27. Review.


Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary.

Marotz C, Sharma A, Humphrey G, Gottel N, Daum C, Gilbert JA, Eloe-Fadrosh E, Knight R.

Biotechniques. 2019 Jul;67(1):29-32. doi: 10.2144/btn-2018-0192. Epub 2019 May 24.


A Simple Microbiome in the European Common Cuttlefish, Sepia officinalis.

Lutz HL, Ramírez-Puebla ST, Abbo L, Durand A, Schlundt C, Gottel NR, Sjaarda AK, Hanlon RT, Gilbert JA, Mark Welch JL.

mSystems. 2019 May 14;4(4). pii: e00177-19. doi: 10.1128/mSystems.00177-19. eCollection 2019 Jul-Aug.


Sex-specific effects of microbiome perturbations on cerebral Aβ amyloidosis and microglia phenotypes.

Dodiya HB, Kuntz T, Shaik SM, Baufeld C, Leibowitz J, Zhang X, Gottel N, Zhang X, Butovsky O, Gilbert JA, Sisodia SS.

J Exp Med. 2019 Jul 1;216(7):1542-1560. doi: 10.1084/jem.20182386. Epub 2019 May 16.


Improving duodenoscope safety: a work in progress.

Gilbert JA.

Lancet Gastroenterol Hepatol. 2019 Jul;4(7):497. doi: 10.1016/S2468-1253(19)30143-8. Epub 2019 May 8. No abstract available.


Consent insufficient for data release-Response.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 May 3;364(6439):446. doi: 10.1126/science.aax7509. No abstract available.


Longitudinal homogenization of the microbiome between both occupants and the built environment in a cohort of United States Air Force Cadets.

Sharma A, Richardson M, Cralle L, Stamper CE, Maestre JP, Stearns-Yoder KA, Postolache TT, Bates KL, Kinney KA, Brenner LA, Lowry CA, Gilbert JA, Hoisington AJ.

Microbiome. 2019 May 2;7(1):70. doi: 10.1186/s40168-019-0686-6.


Agricultural Risk Factors Influence Microbial Ecology in Honghu Lake.

Han M, Dsouza M, Zhou C, Li H, Zhang J, Chen C, Yao Q, Zhong C, Zhou H, Gilbert JA, Wang Z, Ning K.

Genomics Proteomics Bioinformatics. 2019 Feb;17(1):76-90. doi: 10.1016/j.gpb.2018.04.008. Epub 2019 Apr 23.


Microbial and metabolic succession on common building materials under high humidity conditions.

Lax S, Cardona C, Zhao D, Winton VJ, Goodney G, Gao P, Gottel N, Hartmann EM, Henry C, Thomas PM, Kelley ST, Stephens B, Gilbert JA.

Nat Commun. 2019 Apr 16;10(1):1767. doi: 10.1038/s41467-019-09764-z.


Impacts of indoor surface finishes on bacterial viability.

Hu J, Ben Maamar S, Glawe AJ, Gottel N, Gilbert JA, Hartmann EM.

Indoor Air. 2019 Jul;29(4):551-562. doi: 10.1111/ina.12558. Epub 2019 May 13.


Genomic Characterization and Virulence Potential of Two Fusarium oxysporum Isolates Cultured from the International Space Station.

Urbaniak C, van Dam P, Zaborin A, Zaborina O, Gilbert JA, Torok T, Wang CCC, Venkateswaran K.

mSystems. 2019 Mar 19;4(2). pii: e00345-18. doi: 10.1128/mSystems.00345-18. eCollection 2019 Mar-Apr.


Pharmacomicrobiomics: The Holy Grail to Variability in Drug Response?

Sharma A, Buschmann MM, Gilbert JA.

Clin Pharmacol Ther. 2019 Aug;106(2):317-328. doi: 10.1002/cpt.1437. Epub 2019 May 7.


Longitudinal Microbiome Composition and Stability Correlate with Increased Weight and Length of Very-Low-Birth-Weight Infants.

Yee AL, Miller E, Dishaw LJ, Gordon JM, Ji M, Dutra S, Ho TTB, Gilbert JA, Groer M.

mSystems. 2019 Feb 26;4(1). pii: e00229-18. doi: 10.1128/mSystems.00229-18. eCollection 2019 Jan-Feb.


Biological soil crusts inhibit seed germination in a temperate pine barren ecosystem.

Gilbert JA, Corbin JD.

PLoS One. 2019 Feb 20;14(2):e0212466. doi: 10.1371/journal.pone.0212466. eCollection 2019.


Toward unrestricted use of public genomic data.

Amann RI, Baichoo S, Blencowe BJ, Bork P, Borodovsky M, Brooksbank C, Chain PSG, Colwell RR, Daffonchio DG, Danchin A, de Lorenzo V, Dorrestein PC, Finn RD, Fraser CM, Gilbert JA, Hallam SJ, Hugenholtz P, Ioannidis JPA, Jansson JK, Kim JF, Klenk HP, Klotz MG, Knight R, Konstantinidis KT, Kyrpides NC, Mason CE, McHardy AC, Meyer F, Ouzounis CA, Patrinos AAN, Podar M, Pollard KS, Ravel J, Muñoz AR, Roberts RJ, Rosselló-Móra R, Sansone SA, Schloss PD, Schriml LM, Setubal JC, Sorek R, Stevens RL, Tiedje JM, Turjanski A, Tyson GW, Ussery DW, Weinstock GM, White O, Whitman WB, Xenarios I.

Science. 2019 Jan 25;363(6425):350-352. doi: 10.1126/science.aaw1280. No abstract available.


Enteric dysbiosis and fecal calprotectin expression in premature infants.

Ho TTB, Groer MW, Kane B, Yee AL, Torres BA, Gilbert JA, Maheshwari A.

Pediatr Res. 2019 Feb;85(3):361-368. doi: 10.1038/s41390-018-0254-y. Epub 2018 Dec 10.


Bacterial and Archaeal Viruses of Himalayan Hot Springs at Manikaran Modulate Host Genomes.

Sharma A, Schmidt M, Kiesel B, Mahato NK, Cralle L, Singh Y, Richnow HH, Gilbert JA, Arnold W, Lal R.

Front Microbiol. 2018 Dec 14;9:3095. doi: 10.3389/fmicb.2018.03095. eCollection 2018.


GABA-modulating bacteria of the human gut microbiota.

Strandwitz P, Kim KH, Terekhova D, Liu JK, Sharma A, Levering J, McDonald D, Dietrich D, Ramadhar TR, Lekbua A, Mroue N, Liston C, Stewart EJ, Dubin MJ, Zengler K, Knight R, Gilbert JA, Clardy J, Lewis K.

Nat Microbiol. 2019 Mar;4(3):396-403. doi: 10.1038/s41564-018-0307-3. Epub 2018 Dec 10.


Gut microbial features can predict host phenotype response to protein deficiency.

Navarro G, Sharma A, Dugas LR, Forrester T, Gilbert JA, Layden BT.

Physiol Rep. 2018 Dec;6(23):e13932. doi: 10.14814/phy2.13932.


Decreased microbial co-occurrence network stability and SCFA receptor level correlates with obesity in African-origin women.

Dugas LR, Bernabé BP, Priyadarshini M, Fei N, Park SJ, Brown L, Plange-Rhule J, Nelson D, Toh EC, Gao X, Dong Q, Sun J, Kliethermes S, Gottel N, Luke A, Gilbert JA, Layden BT.

Sci Rep. 2018 Nov 20;8(1):17135. doi: 10.1038/s41598-018-35230-9.


Existing Climate Change Will Lead to Pronounced Shifts in the Diversity of Soil Prokaryotes.

Ladau J, Shi Y, Jing X, He JS, Chen L, Lin X, Fierer N, Gilbert JA, Pollard KS, Chu H.

mSystems. 2018 Oct 23;3(5). pii: e00167-18. doi: 10.1128/mSystems.00167-18. eCollection 2018 Sep-Oct.


Phylogenetic imprint of woody plants on the soil mycobiome in natural mountain forests of eastern China.

Yang T, Tedersoo L, Soltis PS, Soltis DE, Gilbert JA, Sun M, Shi Y, Wang H, Li Y, Zhang J, Chen Z, Lin H, Zhao Y, Fu C, Chu H.

ISME J. 2019 Mar;13(3):686-697. doi: 10.1038/s41396-018-0303-x. Epub 2018 Oct 23.


The chemodiversity of paddy soil dissolved organic matter correlates with microbial community at continental scales.

Li HY, Wang H, Wang HT, Xin PY, Xu XH, Ma Y, Liu WP, Teng CY, Jiang CL, Lou LP, Arnold W, Cralle L, Zhu YG, Chu JF, Gilbert JA, Zhang ZJ.

Microbiome. 2018 Oct 19;6(1):187. doi: 10.1186/s40168-018-0561-x.


Preserving microbial diversity.

Bello MGD, Knight R, Gilbert JA, Blaser MJ.

Science. 2018 Oct 5;362(6410):33-34. doi: 10.1126/science.aau8816. No abstract available.


Dichotomous development of the gut microbiome in preterm infants.

Ho TTB, Groer MW, Kane B, Yee AL, Torres BA, Gilbert JA, Maheshwari A.

Microbiome. 2018 Sep 12;6(1):157. doi: 10.1186/s40168-018-0547-8.


Microbial exposure and human health.

Sharma A, Gilbert JA.

Curr Opin Microbiol. 2018 Aug;44:79-87. doi: 10.1016/j.mib.2018.08.003. Epub 2018 Sep 5. Review.


Verily project releases millions of factory-reared mosquitoes.

Gilbert JA, Melton L.

Nat Biotechnol. 2018 Sep 6;36(9):781-782. doi: 10.1038/nbt0918-781a. No abstract available.


Sepsis care bundles: a work in progress.

Gilbert JA.

Lancet Respir Med. 2018 Nov;6(11):821-823. doi: 10.1016/S2213-2600(18)30362-X. Epub 2018 Aug 24. Review. No abstract available.


Gut microbiota composition and butyrate production in children affected by non-IgE-mediated cow's milk allergy.

Berni Canani R, De Filippis F, Nocerino R, Paparo L, Di Scala C, Cosenza L, Della Gatta G, Calignano A, De Caro C, Laiola M, Gilbert JA, Ercolini D.

Sci Rep. 2018 Aug 21;8(1):12500. doi: 10.1038/s41598-018-30428-3.

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