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Items: 1 to 50 of 438

1.

The chemodiversity of paddy soil dissolved organic matter correlates with microbial community at continental scales.

Li HY, Wang H, Wang HT, Xin PY, Xu XH, Ma Y, Liu WP, Teng CY, Jiang CL, Lou LP, Arnold W, Cralle L, Zhu YG, Chu JF, Gilbert JA, Zhang ZJ.

Microbiome. 2018 Oct 19;6(1):187. doi: 10.1186/s40168-018-0561-x.

2.

Preserving microbial diversity.

Bello MGD, Knight R, Gilbert JA, Blaser MJ.

Science. 2018 Oct 5;362(6410):33-34. doi: 10.1126/science.aau8816. No abstract available.

PMID:
30287652
3.

Dichotomous development of the gut microbiome in preterm infants.

Ho TTB, Groer MW, Kane B, Yee AL, Torres BA, Gilbert JA, Maheshwari A.

Microbiome. 2018 Sep 12;6(1):157. doi: 10.1186/s40168-018-0547-8.

4.

Microbial exposure and human health.

Sharma A, Gilbert JA.

Curr Opin Microbiol. 2018 Aug;44:79-87. doi: 10.1016/j.mib.2018.08.003. Epub 2018 Sep 5. Review.

PMID:
30195150
5.

Verily project releases millions of factory-reared mosquitoes.

Gilbert JA, Melton L.

Nat Biotechnol. 2018 Sep 6;36(9):781-782. doi: 10.1038/nbt0918-781a. No abstract available.

PMID:
30188519
6.

Sepsis care bundles: a work in progress.

Gilbert JA.

Lancet Respir Med. 2018 Aug 24. pii: S2213-2600(18)30362-X. doi: 10.1016/S2213-2600(18)30362-X. [Epub ahead of print] No abstract available.

PMID:
30150012
7.

Gut microbiota composition and butyrate production in children affected by non-IgE-mediated cow's milk allergy.

Berni Canani R, De Filippis F, Nocerino R, Paparo L, Di Scala C, Cosenza L, Della Gatta G, Calignano A, De Caro C, Laiola M, Gilbert JA, Ercolini D.

Sci Rep. 2018 Aug 21;8(1):12500. doi: 10.1038/s41598-018-30428-3.

8.

Microbiology of the built environment.

Gilbert JA, Stephens B.

Nat Rev Microbiol. 2018 Nov;16(11):661-670. doi: 10.1038/s41579-018-0065-5. Review.

PMID:
30127345
9.

Gut microbiota, short chain fatty acids, and obesity across the epidemiologic transition: the METS-Microbiome study protocol.

Dugas LR, Lie L, Plange-Rhule J, Bedu-Addo K, Bovet P, Lambert EV, Forrester TE, Luke A, Gilbert JA, Layden BT.

BMC Public Health. 2018 Aug 6;18(1):978. doi: 10.1186/s12889-018-5879-6.

10.

Genetic correlation network prediction of forest soil microbial functional organization.

Ma B, Zhao K, Lv X, Su W, Dai Z, Gilbert JA, Brookes PC, Faust K, Xu J.

ISME J. 2018 Oct;12(10):2492-2505. doi: 10.1038/s41396-018-0232-8. Epub 2018 Jul 25.

11.

Dysbiosis in Children Born by Caesarean Section.

Salas Garcia MC, Yee AL, Gilbert JA, Dsouza M.

Ann Nutr Metab. 2018;73 Suppl 3:24-32. doi: 10.1159/000492168. Epub 2018 Jul 24. Review.

12.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Jul 6;36(7):660. doi: 10.1038/nbt0718-660a. No abstract available.

PMID:
29979671
13.

Metagenomic analysis of basal ice from an Alaskan glacier.

Kayani MUR, Doyle SM, Sangwan N, Wang G, Gilbert JA, Christner BC, Zhu TF.

Microbiome. 2018 Jul 5;6(1):123. doi: 10.1186/s40168-018-0505-5.

14.

Environmental Sources of Bacteria Differentially Influence Host-Associated Microbial Dynamics.

Cardona C, Lax S, Larsen P, Stephens B, Hampton-Marcell J, Edwardson CF, Henry C, Van Bonn B, Gilbert JA.

mSystems. 2018 May 29;3(3). pii: e00052-18. doi: 10.1128/mSystems.00052-18. eCollection 2018 May-Jun.

15.

American Gut: an Open Platform for Citizen Science Microbiome Research.

McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q; American Gut Consortium , Knight R.

mSystems. 2018 May 15;3(3). pii: e00031-18. doi: 10.1128/mSystems.00031-18. eCollection 2018 May-Jun.

16.

Salinity is a key factor driving the nitrogen cycling in the mangrove sediment.

Wang H, Gilbert JA, Zhu Y, Yang X.

Sci Total Environ. 2018 Aug 1;631-632:1342-1349. doi: 10.1016/j.scitotenv.2018.03.102. Epub 2018 Mar 28.

PMID:
29727958
17.

Earth Microbiome Project and Global Systems Biology.

Gilbert JA, Jansson JK, Knight R.

mSystems. 2018 Apr 10;3(3). pii: e00217-17. doi: 10.1128/mSystems.00217-17. eCollection 2018 May-Jun. No abstract available.

18.

Advancing towards precision medicine in ARDS.

Gilbert JA.

Lancet Respir Med. 2018 Jul;6(7):494-495. doi: 10.1016/S2213-2600(18)30156-5. Epub 2018 Apr 12. No abstract available.

PMID:
29657094
19.

Current understanding of the human microbiome.

Gilbert JA, Blaser MJ, Caporaso JG, Jansson JK, Lynch SV, Knight R.

Nat Med. 2018 Apr 10;24(4):392-400. doi: 10.1038/nm.4517. Review.

PMID:
29634682
20.

Soil Bacterial Diversity Is Associated with Human Population Density in Urban Greenspaces.

Wang H, Cheng M, Dsouza M, Weisenhorn P, Zheng T, Gilbert JA.

Environ Sci Technol. 2018 May 1;52(9):5115-5124. doi: 10.1021/acs.est.7b06417. Epub 2018 Apr 12.

PMID:
29624051
21.

Current State of Knowledge on Implications of Gut Microbiome for Surgical Conditions.

Chen EB, Cason C, Gilbert JA, Ho KJ.

J Gastrointest Surg. 2018 Jun;22(6):1112-1123. doi: 10.1007/s11605-018-3755-4. Epub 2018 Apr 5.

PMID:
29623674
22.

Ecological medicine.

Gilbert JA.

Environ Microbiol. 2018 Apr 3. doi: 10.1111/1462-2920.14115. [Epub ahead of print] No abstract available.

PMID:
29614208
23.

Early-Career Systems Microbiology Scientists.

Gilbert JA.

mSystems. 2018 Mar 6;3(2). pii: e00002-18. doi: 10.1128/mSystems.00002-18. eCollection 2018 Mar-Apr. No abstract available.

24.

Effect of increasing glucocorticoids on asthma exacerbations.

Gilbert JA.

Lancet Respir Med. 2018 May;6(5):328. doi: 10.1016/S2213-2600(18)30118-8. Epub 2018 Mar 16. No abstract available.

PMID:
29555108
25.

Correction: A microbial survey of the International Space Station (ISS).

Lang JM, Coil DA, Neches RY, Brown WE, Cavalier D, Severance M, Hampton-Marcell JT, Gilbert JA, Eisen JA.

PeerJ. 2018 Feb 27;5. pii: e4029/correction-1. doi: 10.7717/peerj.4029/correction-1. eCollection 2018.

26.

A microbial survey of the International Space Station (ISS).

Lang JM, Coil DA, Neches RY, Brown WE, Cavalier D, Severance M, Hampton-Marcell JT, Gilbert JA, Eisen JA.

PeerJ. 2017 Dec 5;5:e4029. doi: 10.7717/peerj.4029. eCollection 2017. Erratum in: PeerJ. 2018 Feb 27;5:.

27.

Systems biology of the human microbiome.

Peñalver Bernabé B, Cralle L, Gilbert JA.

Curr Opin Biotechnol. 2018 Jun;51:146-153. doi: 10.1016/j.copbio.2018.01.018. Epub 2018 Feb 14. Review.

PMID:
29453029
28.

CAR T-cells for relapsed B-cell ALL in adults.

Gilbert JA.

Lancet Oncol. 2018 Mar;19(3):e143. doi: 10.1016/S1470-2045(18)30086-X. Epub 2018 Feb 9. No abstract available.

PMID:
29429915
29.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Feb 6;36(2):196. doi: 10.1038/nbt0218-196a. No abstract available.

30.

Discerning autotrophy, mixotrophy and heterotrophy in marine TACK archaea from the North Atlantic.

Seyler LM, McGuinness LR, Gilbert JA, Biddle JF, Gong D, Kerkhof LJ.

FEMS Microbiol Ecol. 2018 Mar 1;94(3). doi: 10.1093/femsec/fiy014.

PMID:
29390107
31.

BGJ398 for FGFR-altered advanced cholangiocarcinoma.

Gilbert JA.

Lancet Oncol. 2018 Jan;19(1):e16. doi: 10.1016/S1470-2045(17)30902-6. Epub 2017 Dec 7. No abstract available.

PMID:
29233557
32.

Seasonal and pandemic influenza: global fatigue versus global preparedness.

Gilbert JA.

Lancet Respir Med. 2018 Feb;6(2):94-95. doi: 10.1016/S2213-2600(17)30466-6. Epub 2017 Nov 20. Review. No abstract available.

PMID:
29169772
33.

A communal catalogue reveals Earth's multiscale microbial diversity.

Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, Vázquez-Baeza Y, González A, Morton JT, Mirarab S, Zech Xu Z, Jiang L, Haroon MF, Kanbar J, Zhu Q, Jin Song S, Kosciolek T, Bokulich NA, Lefler J, Brislawn CJ, Humphrey G, Owens SM, Hampton-Marcell J, Berg-Lyons D, McKenzie V, Fierer N, Fuhrman JA, Clauset A, Stevens RL, Shade A, Pollard KS, Goodwin KD, Jansson JK, Gilbert JA, Knight R; Earth Microbiome Project Consortium.

Nature. 2017 Nov 23;551(7681):457-463. doi: 10.1038/nature24621. Epub 2017 Nov 1.

34.

Microbial diversity in an intensively managed landscape is structured by landscape connectivity.

Griffin JS, Lu N, Sangwan N, Li A, Dsouza M, Stumpf AJ, Sevilla T, Culotti A, Keefer LL, Kelly JJ, Gilbert JA, Wells GF, Packman AI.

FEMS Microbiol Ecol. 2017 Oct 1;93(10). doi: 10.1093/femsec/fix120.

PMID:
28961974
35.

Impact of histopathology, tumor-infiltrating lymphocytes, and adjuvant chemotherapy on prognosis of triple-negative breast cancer.

Leon-Ferre RA, Polley MY, Liu H, Gilbert JA, Cafourek V, Hillman DW, Elkhanany A, Akinhanmi M, Lilyquist J, Thomas A, Negron V, Boughey JC, Liu MC, Ingle JN, Kalari KR, Couch FJ, Visscher DW, Goetz MP.

Breast Cancer Res Treat. 2018 Jan;167(1):89-99. doi: 10.1007/s10549-017-4499-7. Epub 2017 Sep 14.

PMID:
28913760
36.

Pazopanib for advanced liposarcoma.

Gilbert JA.

Lancet Oncol. 2017 Oct;18(10):e564. doi: 10.1016/S1470-2045(17)30663-0. Epub 2017 Aug 24. No abstract available. Erratum in: Lancet Oncol. 2017 Oct;18(10):e562.

PMID:
28844815
37.

Metabolic Reconstruction and Modeling Microbial Electrosynthesis.

Marshall CW, Ross DE, Handley KM, Weisenhorn PB, Edirisinghe JN, Henry CS, Gilbert JA, May HD, Norman RS.

Sci Rep. 2017 Aug 21;7(1):8391. doi: 10.1038/s41598-017-08877-z.

38.

Ready-to-use T cells for infection after stem-cell transplant.

Gilbert JA.

Lancet Oncol. 2017 Sep;18(9):e519. doi: 10.1016/S1470-2045(17)30625-3. Epub 2017 Aug 17. No abstract available.

PMID:
28826590
39.

Taxonomic and functional patterns across soil microbial communities of global biomes.

Noronha MF, Lacerda Júnior GV, Gilbert JA, de Oliveira VM.

Sci Total Environ. 2017 Dec 31;609:1064-1074. doi: 10.1016/j.scitotenv.2017.07.159. Epub 2017 Aug 3. No abstract available.

PMID:
28787780
40.

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2017 Aug 8;35(8):725-731. doi: 10.1038/nbt.3893.

PMID:
28787424
41.

Metabolic and spatio-taxonomic response of uncultivated seafloor bacteria following the Deepwater Horizon oil spill.

Handley KM, Piceno YM, Hu P, Tom LM, Mason OU, Andersen GL, Jansson JK, Gilbert JA.

ISME J. 2017 Nov;11(11):2569-2583. doi: 10.1038/ismej.2017.110. Epub 2017 Aug 4.

42.

Erratum for Linz et al., "Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes".

Linz AM, Crary BC, Shade A, Owens S, Gilbert JA, Knight R, McMahon KD.

mSphere. 2017 Jul 19;2(4). pii: e00296-17. doi: 10.1128/mSphere.00296-17. eCollection 2017 Jul-Aug.

43.

Specific Signatures of the Gut Microbiota and Increased Levels of Butyrate in Children Treated with Fermented Cow's Milk Containing Heat-Killed Lactobacillus paracasei CBA L74.

Berni Canani R, De Filippis F, Nocerino R, Laiola M, Paparo L, Calignano A, De Caro C, Coretti L, Chiariotti L, Gilbert JA, Ercolini D.

Appl Environ Microbiol. 2017 Sep 15;83(19). pii: e01206-17. doi: 10.1128/AEM.01206-17. Print 2017 Oct 1.

44.

Bacterial Community Composition and Dynamics Spanning Five Years in Freshwater Bog Lakes.

Linz AM, Crary BC, Shade A, Owens S, Gilbert JA, Knight R, McMahon KD.

mSphere. 2017 Jun 28;2(3). pii: e00169-17. doi: 10.1128/mSphere.00169-17. eCollection 2017 May-Jun. Erratum in: mSphere. 2017 Jul 19;2(4):.

45.

Savolitinib for MET-driven papillary renal cell carcinoma.

Gilbert JA.

Lancet Oncol. 2017 Aug;18(8):e440. doi: 10.1016/S1470-2045(17)30508-9. Epub 2017 Jun 29. No abstract available.

PMID:
28669737
46.

Potential drug targets in small-bowel adenocarcinoma.

Gilbert JA.

Lancet Oncol. 2017 Aug;18(8):e436. doi: 10.1016/S1470-2045(17)30503-X. Epub 2017 Jun 22. No abstract available.

PMID:
28648558
47.

Alectinib surpasses crizotinib for untreated ALK-positive NSCLC.

Gilbert JA.

Lancet Oncol. 2017 Jul;18(7):e377. doi: 10.1016/S1470-2045(17)30482-5. Epub 2017 Jun 15. No abstract available.

PMID:
28625556
48.

Significant Impacts of Increasing Aridity on the Arid Soil Microbiome.

Neilson JW, Califf K, Cardona C, Copeland A, van Treuren W, Josephson KL, Knight R, Gilbert JA, Quade J, Caporaso JG, Maier RM.

mSystems. 2017 May 30;2(3). pii: e00195-16. doi: 10.1128/mSystems.00195-16. eCollection 2017 May-Jun.

49.

Comparative Genomic Analysis Reveals Habitat-Specific Genes and Regulatory Hubs within the Genus Novosphingobium.

Kumar R, Verma H, Haider S, Bajaj A, Sood U, Ponnusamy K, Nagar S, Shakarad MN, Negi RK, Singh Y, Khurana JP, Gilbert JA, Lal R.

mSystems. 2017 May 23;2(3). pii: e00020-17. doi: 10.1128/mSystems.00020-17. eCollection 2017 May-Jun.

50.

Bacterial colonization and succession in a newly opened hospital.

Lax S, Sangwan N, Smith D, Larsen P, Handley KM, Richardson M, Guyton K, Krezalek M, Shogan BD, Defazio J, Flemming I, Shakhsheer B, Weber S, Landon E, Garcia-Houchins S, Siegel J, Alverdy J, Knight R, Stephens B, Gilbert JA.

Sci Transl Med. 2017 May 24;9(391). pii: eaah6500. doi: 10.1126/scitranslmed.aah6500.

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