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Items: 15

1.

Epidemiology of paediatric gastrointestinal colonisation by extended spectrum cephalosporin-resistant Escherichia coli and Klebsiella pneumoniae isolates in north-west Cambodia.

van Aartsen JJ, Moore CE, Parry CM, Turner P, Phot N, Mao S, Suy K, Davies T, Giess A, Sheppard AE, Peto TEA, Day NPJ, Crook DW, Walker AS, Stoesser N.

BMC Microbiol. 2019 Mar 12;19(1):59. doi: 10.1186/s12866-019-1431-9.

2.

REPARATION: ribosome profiling assisted (re-)annotation of bacterial genomes.

Ndah E, Jonckheere V, Giess A, Valen E, Menschaert G, Van Damme P.

Nucleic Acids Res. 2017 Nov 16;45(20):e168. doi: 10.1093/nar/gkx758.

3.

Ribosome signatures aid bacterial translation initiation site identification.

Giess A, Jonckheere V, Ndah E, Chyżyńska K, Van Damme P, Valen E.

BMC Biol. 2017 Aug 30;15(1):76. doi: 10.1186/s12915-017-0416-0.

4.

Maternal colonization with Streptococcus agalactiae and associated stillbirth and neonatal disease in coastal Kenya.

Seale AC, Koech AC, Sheppard AE, Barsosio HC, Langat J, Anyango E, Mwakio S, Mwarumba S, Morpeth SC, Anampiu K, Vaughan A, Giess A, Mogeni P, Walusuna L, Mwangudzah H, Mwanzui D, Salim M, Kemp B, Jones C, Mturi N, Tsofa B, Mumbo E, Mulewa D, Bandika V, Soita M, Owiti M, Onzere N, Walker AS, Schrag SJ, Kennedy SH, Fegan G, Crook DW, Berkley JA.

Nat Microbiol. 2016 May 23;1(7):16067. doi: 10.1038/nmicrobiol.2016.67.

5.

Characterisation of Invasive Streptococcus pneumoniae Isolated from Cambodian Children between 2007 - 2012.

Moore CE, Giess A, Soeng S, Sar P, Kumar V, Nhoung P, Bousfield R, Turner P, Stoesser N, Day NP, Parry CM.

PLoS One. 2016 Jul 22;11(7):e0159358. doi: 10.1371/journal.pone.0159358. eCollection 2016.

6.

Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance Gene blaKPC.

Sheppard AE, Stoesser N, Wilson DJ, Sebra R, Kasarskis A, Anson LW, Giess A, Pankhurst LJ, Vaughan A, Grim CJ, Cox HL, Yeh AJ; Modernising Medical Microbiology (MMM) Informatics Group, Sifri CD, Walker AS, Peto TE, Crook DW, Mathers AJ.

Antimicrob Agents Chemother. 2016 May 23;60(6):3767-78. doi: 10.1128/AAC.00464-16. Print 2016 Jun.

7.

Low Dose Iron Treatments Induce a DNA Damage Response in Human Endothelial Cells within Minutes.

Mollet IG, Patel D, Govani FS, Giess A, Paschalaki K, Periyasamy M, Lidington EC, Mason JC, Jones MD, Game L, Ali S, Shovlin CL.

PLoS One. 2016 Feb 11;11(2):e0147990. doi: 10.1371/journal.pone.0147990. eCollection 2016.

8.

Extensive Within-Host Diversity in Fecally Carried Extended-Spectrum-Beta-Lactamase-Producing Escherichia coli Isolates: Implications for Transmission Analyses.

Stoesser N, Sheppard AE, Moore CE, Golubchik T, Parry CM, Nget P, Saroeun M, Day NP, Giess A, Johnson JR, Peto TE, Crook DW, Walker AS; Modernizing Medical Microbiology Informatics Group.

J Clin Microbiol. 2015 Jul;53(7):2122-31. doi: 10.1128/JCM.00378-15. Epub 2015 Apr 22.

9.

Klebsiella pneumoniae carbapenemase (KPC)-producing K. pneumoniae at a single institution: insights into endemicity from whole-genome sequencing.

Mathers AJ, Stoesser N, Sheppard AE, Pankhurst L, Giess A, Yeh AJ, Didelot X, Turner SD, Sebra R, Kasarskis A, Peto T, Crook D, Sifri CD.

Antimicrob Agents Chemother. 2015 Mar;59(3):1656-63. doi: 10.1128/AAC.04292-14. Epub 2015 Jan 5.

10.

Dynamics of MDR Enterobacter cloacae outbreaks in a neonatal unit in Nepal: insights using wider sampling frames and next-generation sequencing.

Stoesser N, Sheppard AE, Shakya M, Sthapit B, Thorson S, Giess A, Kelly D, Pollard AJ, Peto TE, Walker AS, Crook DW.

J Antimicrob Chemother. 2015 Apr;70(4):1008-15. doi: 10.1093/jac/dku521. Epub 2015 Jan 3.

11.

Genome sequencing of an extended series of NDM-producing Klebsiella pneumoniae isolates from neonatal infections in a Nepali hospital characterizes the extent of community- versus hospital-associated transmission in an endemic setting.

Stoesser N, Giess A, Batty EM, Sheppard AE, Walker AS, Wilson DJ, Didelot X, Bashir A, Sebra R, Kasarskis A, Sthapit B, Shakya M, Kelly D, Pollard AJ, Peto TE, Crook DW, Donnelly P, Thorson S, Amatya P, Joshi S.

Antimicrob Agents Chemother. 2014 Dec;58(12):7347-57. doi: 10.1128/AAC.03900-14. Epub 2014 Sep 29.

12.

Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007-12, with whole pathogen genome sequences: an observational study.

Walker TM, Lalor MK, Broda A, Ortega LS, Morgan M, Parker L, Churchill S, Bennett K, Golubchik T, Giess AP, Del Ojo Elias C, Jeffery KJ, Bowler ICJW, Laurenson IF, Barrett A, Drobniewski F, McCarthy ND, Anderson LF, Abubakar I, Thomas HL, Monk P, Smith EG, Walker AS, Crook DW, Peto TEA, Conlon CP.

Lancet Respir Med. 2014 Apr;2(4):285-292. doi: 10.1016/S2213-2600(14)70027-X. Epub 2014 Mar 4.

13.

Whole genome sequencing and de novo assembly identifies Sydney-like variant noroviruses and recombinants during the winter 2012/2013 outbreak in England.

Wong TH, Dearlove BL, Hedge J, Giess AP, Piazza P, Trebes A, Paul J, Smit E, Smith EG, Sutton JK, Wilcox MH, Dingle KE, Peto TE, Crook DW, Wilson DJ, Wyllie DH.

Virol J. 2013 Nov 13;10:335. doi: 10.1186/1743-422X-10-335.

14.

Directional next-generation RNA sequencing and examination of premature termination codon mutations in endoglin/hereditary haemorrhagic telangiectasia.

Govani FS, Giess A, Mollet IG, Begbie ME, Jones MD, Game L, Shovlin CL.

Mol Syndromol. 2013 Apr;4(4):184-96. doi: 10.1159/000350208. Epub 2013 Apr 11.

15.

Cdc14 phosphatase promotes segregation of telomeres through repression of RNA polymerase II transcription.

Clemente-Blanco A, Sen N, Mayan-Santos M, Sacristán MP, Graham B, Jarmuz A, Giess A, Webb E, Game L, Eick D, Bueno A, Merkenschlager M, Aragón L.

Nat Cell Biol. 2011 Oct 23;13(12):1450-6. doi: 10.1038/ncb2365.

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