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Items: 45


Mapping the imprint of biotic interactions on β-diversity.

Ohlmann M, Mazel F, Chalmandrier L, Bec S, Coissac E, Gielly L, Pansu J, Schilling V, Taberlet P, Zinger L, Chave J, Thuiller W.

Ecol Lett. 2018 Nov;21(11):1660-1669. doi: 10.1111/ele.13143. Epub 2018 Aug 28.


DNA from lake sediments reveals long-term ecosystem changes after a biological invasion.

Ficetola GF, Poulenard J, Sabatier P, Messager E, Gielly L, Leloup A, Etienne D, Bakke J, Malet E, Fanget B, Støren E, Reyss JL, Taberlet P, Arnaud F.

Sci Adv. 2018 May 9;4(5):eaar4292. doi: 10.1126/sciadv.aar4292. eCollection 2018 May.


Plant DNA metabarcoding of lake sediments: How does it represent the contemporary vegetation.

Alsos IG, Lammers Y, Yoccoz NG, Jørgensen T, Sjögren P, Gielly L, Edwards ME.

PLoS One. 2018 Apr 17;13(4):e0195403. doi: 10.1371/journal.pone.0195403. eCollection 2018.


Lake sedimentary DNA accurately records 20th Century introductions of exotic conifers in Scotland.

Sjögren P, Edwards ME, Gielly L, Langdon CT, Croudace IW, Merkel MK, Fonville T, Alsos IG.

New Phytol. 2017 Jan;213(2):929-941. doi: 10.1111/nph.14199. Epub 2016 Sep 28.


Understanding the evolution of holoparasitic plants: the complete plastid genome of the holoparasite Cytinus hypocistis (Cytinaceae).

Roquet C, Coissac É, Cruaud C, Boleda M, Boyer F, Alberti A, Gielly L, Taberlet P, Thuiller W, Van Es J, Lavergne S.

Ann Bot. 2016 Jul 21. pii: mcw135. [Epub ahead of print]


Long-lasting modification of soil fungal diversity associated with the introduction of rabbits to a remote sub-Antarctic archipelago.

Pansu J, Winkworth RC, Hennion F, Gielly L, Taberlet P, Choler P.

Biol Lett. 2015 Sep;11(9):20150408. doi: 10.1098/rsbl.2015.0408.


Reconstructing long-term human impacts on plant communities: an ecological approach based on lake sediment DNA.

Pansu J, Giguet-Covex C, Ficetola GF, Gielly L, Boyer F, Zinger L, Arnaud F, Poulenard J, Taberlet P, Choler P.

Mol Ecol. 2015 Apr;24(7):1485-98. doi: 10.1111/mec.13136. Epub 2015 Mar 23.


DNA metabarcoding diet analysis for species with parapatric vs sympatric distribution: a case study on subterranean rodents.

Lopes CM, De Barba M, Boyer F, Mercier C, da Silva Filho PJ, Heidtmann LM, Galiano D, Kubiak BB, Langone P, Garcias FM, Gielly L, Coissac E, de Freitas TR, Taberlet P.

Heredity (Edinb). 2015 May;114(5):525-36. doi: 10.1038/hdy.2014.109. Epub 2015 Feb 4.


Highly overlapping winter diet in two sympatric lemming species revealed by DNA metabarcoding.

Soininen EM, Gauthier G, Bilodeau F, Berteaux D, Gielly L, Taberlet P, Gussarova G, Bellemain E, Hassel K, Stenøien HK, Epp L, Schrøder-Nielsen A, Brochmann C, Yoccoz NG.

PLoS One. 2015 Jan 30;10(1):e0115335. doi: 10.1371/journal.pone.0115335. eCollection 2015.


Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data.

Ficetola GF, Pansu J, Bonin A, Coissac E, Giguet-Covex C, De Barba M, Gielly L, Lopes CM, Boyer F, Pompanon F, Rayé G, Taberlet P.

Mol Ecol Resour. 2015 May;15(3):543-56. doi: 10.1111/1755-0998.12338. Epub 2014 Nov 10.


Sources of variation in small rodent trophic niche: new insights from DNA metabarcoding and stable isotope analysis.

Soininen EM, Ehrich D, Lecomte N, Yoccoz NG, Tarroux A, Berteaux D, Gauthier G, Gielly L, Brochmann C, Gussarova G, Ims RA.

Isotopes Environ Health Stud. 2014;50(3):361-81. doi: 10.1080/10256016.2014.915824. Epub 2014 May 15.


Fifty thousand years of Arctic vegetation and megafaunal diet.

Willerslev E, Davison J, Moora M, Zobel M, Coissac E, Edwards ME, Lorenzen ED, Vestergård M, Gussarova G, Haile J, Craine J, Gielly L, Boessenkool S, Epp LS, Pearman PB, Cheddadi R, Murray D, Bråthen KA, Yoccoz N, Binney H, Cruaud C, Wincker P, Goslar T, Alsos IG, Bellemain E, Brysting AK, Elven R, Sønstebø JH, Murton J, Sher A, Rasmussen M, Rønn R, Mourier T, Cooper A, Austin J, Möller P, Froese D, Zazula G, Pompanon F, Rioux D, Niderkorn V, Tikhonov A, Savvinov G, Roberts RG, MacPhee RD, Gilbert MT, Kjær KH, Orlando L, Brochmann C, Taberlet P.

Nature. 2014 Feb 6;506(7486):47-51. doi: 10.1038/nature12921.


Long livestock farming history and human landscape shaping revealed by lake sediment DNA.

Giguet-Covex C, Pansu J, Arnaud F, Rey PJ, Griggo C, Gielly L, Domaizon I, Coissac E, David F, Choler P, Poulenard J, Taberlet P.

Nat Commun. 2014;5:3211. doi: 10.1038/ncomms4211.


Arctic Small Rodents Have Diverse Diets and Flexible Food Selection.

Soininen EM, Ravolainen VT, Bråthen KA, Yoccoz NG, Gielly L, Ims RA.

PLoS One. 2013 Jun 27;8(6):e68128. doi: 10.1371/journal.pone.0068128. Print 2013.


Genetic diversity in widespread species is not congruent with species richness in alpine plant communities.

Taberlet P, Zimmermann NE, Englisch T, Tribsch A, Holderegger R, Alvarez N, Niklfeld H, Coldea G, Mirek Z, Moilanen A, Ahlmer W, Marsan PA, Bona E, Bovio M, Choler P, Cieślak E, Colli L, Cristea V, Dalmas JP, Frajman B, Garraud L, Gaudeul M, Gielly L, Gutermann W, Jogan N, Kagalo AA, Korbecka G, Küpfer P, Lequette B, Letz DR, Manel S, Mansion G, Marhold K, Martini F, Negrini R, Niño F, Paun O, Pellecchia M, Perico G, Piękoś-Mirkowa H, Prosser F, Puşcaş M, Ronikier M, Scheuerer M, Schneeweiss GM, Schönswetter P, Schratt-Ehrendorfer L, Schüpfer F, Selvaggi A, Steinmann K, Thiel-Egenter C, van Loo M, Winkler M, Wohlgemuth T, Wraber T, Gugerli F; IntraBioDiv Consortium, Vellend M.

Ecol Lett. 2012 Dec;15(12):1439-48. doi: 10.1111/ele.12004. Epub 2012 Sep 25.


Broad-scale adaptive genetic variation in alpine plants is driven by temperature and precipitation.

Manel S, Gugerli F, Thuiller W, Alvarez N, Legendre P, Holderegger R, Gielly L, Taberlet P; IntraBioDiv Consortium.

Mol Ecol. 2012 Aug;21(15):3729-38. doi: 10.1111/j.1365-294X.2012.05656.x. Epub 2012 Jun 10.


DNA from soil mirrors plant taxonomic and growth form diversity.

Yoccoz NG, Bråthen KA, Gielly L, Haile J, Edwards ME, Goslar T, Von Stedingk H, Brysting AK, Coissac E, Pompanon F, Sønstebø JH, Miquel C, Valentini A, De Bello F, Chave J, Thuiller W, Wincker P, Cruaud C, Gavory F, Rasmussen M, Gilbert MT, Orlando L, Brochmann C, Willerslev E, Taberlet P.

Mol Ecol. 2012 Aug;21(15):3647-55. doi: 10.1111/j.1365-294X.2012.05545.x. Epub 2012 Apr 16.


Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies.

Taberlet P, Prud'Homme SM, Campione E, Roy J, Miquel C, Shehzad W, Gielly L, Rioux D, Choler P, Clément JC, Melodelima C, Pompanon F, Coissac E.

Mol Ecol. 2012 Apr;21(8):1816-20. doi: 10.1111/j.1365-294X.2011.05317.x. Epub 2012 Feb 2.


AFLP markers reveal high clonal diversity and extreme longevity in four key arctic-alpine species.

de Witte LC, Armbruster GF, Gielly L, Taberlet P, Stöcklin J.

Mol Ecol. 2012 Mar;21(5):1081-97. doi: 10.1111/j.1365-294X.2011.05326.x. Epub 2011 Nov 10.


Using next-generation sequencing for molecular reconstruction of past Arctic vegetation and climate.

Sønstebø JH, Gielly L, Brysting AK, Elven R, Edwards M, Haile J, Willerslev E, Coissac E, Rioux D, Sannier J, Taberlet P, Brochmann C.

Mol Ecol Resour. 2010 Nov;10(6):1009-18. doi: 10.1111/j.1755-0998.2010.02855.x.


Selection criteria for scoring amplified fragment length polymorphisms (AFLPs) positively affect the reliability of population genetic parameter estimates.

Herrmann D, Poncet BN, Manel S, Rioux D, Gielly L, Taberlet P, Gugerli F.

Genome. 2010 Apr;53(4):302-10. doi: 10.1139/g10-006.


Tracking genes of ecological relevance using a genome scan in two independent regional population samples of Arabis alpina.

Poncet BN, Herrmann D, Gugerli F, Taberlet P, Holderegger R, Gielly L, Rioux D, Thuiller W, Aubert S, Manel S.

Mol Ecol. 2010 Jul;19(14):2896-907. doi: 10.1111/j.1365-294X.2010.04696.x. Epub 2010 Jul 1.


Analysing diet of small herbivores: the efficiency of DNA barcoding coupled with high-throughput pyrosequencing for deciphering the composition of complex plant mixtures.

Soininen EM, Valentini A, Coissac E, Miquel C, Gielly L, Brochmann C, Brysting AK, Sønstebø JH, Ims RA, Yoccoz NG, Taberlet P.

Front Zool. 2009 Aug 20;6:16. doi: 10.1186/1742-9994-6-16.


History or ecology? Substrate type as a major driver of spatial genetic structure in Alpine plants.

Alvarez N, Thiel-Egenter C, Tribsch A, Holderegger R, Manel S, Schönswetter P, Taberlet P, Brodbeck S, Gaudeul M, Gielly L, Küpfer P, Mansion G, Negrini R, Paun O, Pellecchia M, Rioux D, Schüpfer F, Van Loo M, Winkler M, Gugerli F; IntraBioDiv Consortium.

Ecol Lett. 2009 Jul;12(7):632-40. doi: 10.1111/j.1461-0248.2009.01312.x. Epub 2009 Apr 22.


New perspectives in diet analysis based on DNA barcoding and parallel pyrosequencing: the trnL approach.

Valentini A, Miquel C, Nawaz MA, Bellemain E, Coissac E, Pompanon F, Gielly L, Cruaud C, Nascetti G, Wincker P, Swenson JE, Taberlet P.

Mol Ecol Resour. 2009 Jan;9(1):51-60. doi: 10.1111/j.1755-0998.2008.02352.x. Epub 2008 Oct 22.


Exonuclease activity of proofreading DNA polymerases is at the origin of artifacts in molecular profiling studies.

Gury J, Zinger L, Gielly L, Taberlet P, Geremia RA.

Electrophoresis. 2008 Jun;29(11):2437-44. doi: 10.1002/elps.200700667.


Post-glacial history of the dominant alpine sedge Carex curvula in the European Alpine System inferred from nuclear and chloroplast markers.

Puşcaş M, Choler P, Tribsch A, Gielly L, Rioux D, Gaudeul M, Taberlet P.

Mol Ecol. 2008 May;17(10):2417-29. doi: 10.1111/j.1365-294X.2008.03751.x. Epub 2008 Apr 14.


CE-SSCP and CE-FLA, simple and high-throughput alternatives for fungal diversity studies.

Zinger L, Gury J, Alibeu O, Rioux D, Gielly L, Sage L, Pompanon F, Geremia RA.

J Microbiol Methods. 2008 Jan;72(1):42-53. Epub 2007 Oct 18. Erratum in: J Microbiol Methods. 2008 May;73(2):209.


Power and limitations of the chloroplast trnL (UAA) intron for plant DNA barcoding.

Taberlet P, Coissac E, Pompanon F, Gielly L, Miquel C, Valentini A, Vermat T, Corthier G, Brochmann C, Willerslev E.

Nucleic Acids Res. 2007;35(3):e14. Epub 2006 Dec 14.


Authenticated DNA from ancient wood remains.

Liepelt S, Sperisen C, Deguilloux MF, Petit RJ, Kissling R, Spencer M, de Beaulieu JL, Taberlet P, Gielly L, Ziegenhagen B.

Ann Bot. 2006 Nov;98(5):1107-11. Epub 2006 Sep 20.


Impact of ice ages on circumpolar molecular diversity: insights from an ecological key species.

Alsos IG, Engelskjøn T, Gielly L, Taberlet P, Brochmann C.

Mol Ecol. 2005 Aug;14(9):2739-53. Erratum in: Mol Ecol. 2005 Sep;14(10):3287.


Genetic structure of Rhododendron ferrugineum at a wide range of spatial scales.

Wolf PG, Doche B, Gielly L, Taberlet P.

J Hered. 2004 Jul-Aug;95(4):301-8.


Genetic introgression as a potential to widen a species' niche: insights from alpine Carex curvula.

Choler P, Erschbamer B, Tribsch A, Gielly L, Taberlet P.

Proc Natl Acad Sci U S A. 2004 Jan 6;101(1):171-6. Epub 2003 Dec 22.


Using AFLP to resolve phylogenetic relationships in a morphologically diversified plant species complex when nuclear and chloroplast sequences fail to reveal variability.

Després L, Gielly L, Redoutet B, Taberlet P.

Mol Phylogenet Evol. 2003 May;27(2):185-96. Erratum in: Mol Phylogenet Evol. 2004 Jan;30(1):258.


The evolutionary history of the two karyotypic groups of the common shrew, Sorex araneus, in Poland.

Ratkiewicz M, Fedyk S, Banaszek A, Gielly L, Chetnicki W, Jadwiszczak K, Taberlet P.

Heredity (Edinb). 2002 Apr;88(4):235-42.


Multiple maternal origins and weak phylogeographic structure in domestic goats.

Luikart G, Gielly L, Excoffier L, Vigne JD, Bouvet J, Taberlet P.

Proc Natl Acad Sci U S A. 2001 May 8;98(10):5927-32.


Amplification of oak DNA from ancient and modern wood.

Dumolin-Lapègue S, Pemonge MH, Gielly L, Taberlet P, Petit RJ.

Mol Ecol. 1999 Dec;8(12):2137-40.


Phylogeographical evidence of gene flow among common crossbill (Loxia curvirostra, aves, fringillidae) populations at the continental level

Questiau S, Gielly L, Clouet M, Taberlet P.

Heredity (Edinb). 1999 Aug;83 (Pt 2):196-205.


Molecular phylogeny and evolution of Sorex shrews (Soricidae: insectivora) inferred from mitochondrial DNA sequence data.

Fumagalli L, Taberlet P, Stewart DT, Gielly L, Hausser J, Vogel P.

Mol Phylogenet Evol. 1999 Mar;11(2):222-35.


The use of chloroplast DNA to resolve plant phylogenies: noncoding versus rbcL sequences.

Gielly L, Taberlet P.

Mol Biol Evol. 1994 Sep;11(5):769-77.


Universal primers for amplification of three non-coding regions of chloroplast DNA.

Taberlet P, Gielly L, Pautou G, Bouvet J.

Plant Mol Biol. 1991 Nov;17(5):1105-9.


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