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Evaluation of brain damage resulting from penetrating and non-penetrating stunning in Nelore Cattle using pneumatically powered captive bolt guns.

Oliveira SEO, Dalla Costa FA, Gibson TJ, Costa OAD, Coldebella A, Gregory NG.

Meat Sci. 2018 Nov;145:347-351. doi: 10.1016/j.meatsci.2018.07.016. Epub 2018 Jul 18.


Control of mitotic chromosome condensation by the fission yeast transcription factor Zas1.

Schiklenk C, Petrova B, Kschonsak M, Hassler M, Klein C, Gibson TJ, Haering CH.

J Cell Biol. 2018 Jul 2;217(7):2383-2401. doi: 10.1083/jcb.201711097. Epub 2018 May 7.


Infection of mosquitoes from in vitro cultivated Plasmodium knowlesi H strain.

Armistead JS, Moraes Barros RR, Gibson TJ, Kite WA, Mershon JP, Lambert LE, Orr-Gonzalez SE, Sá JM, Adams JH, Wellems TE.

Int J Parasitol. 2018 Jul;48(8):601-610. doi: 10.1016/j.ijpara.2018.02.004. Epub 2018 Apr 30.


Effectiveness of pneumatically powered penetrating and non-penetrating captive bolts in stunning cattle.

Oliveira SEO, Gregory NG, Dalla Costa FA, Gibson TJ, Dalla Costa OA, Paranhos da Costa MJR.

Meat Sci. 2018 Jun;140:9-13. doi: 10.1016/j.meatsci.2018.02.010. Epub 2018 Feb 15.


Short linear motif core and flanking regions modulate retinoblastoma protein binding affinity and specificity.

Palopoli N, González Foutel NS, Gibson TJ, Chemes LB.

Protein Eng Des Sel. 2018 Mar 1;31(3):69-77. doi: 10.1093/protein/gzx068.


CTCF-Mediated Chromatin Loops between Promoter and Gene Body Regulate Alternative Splicing across Individuals.

Ruiz-Velasco M, Kumar M, Lai MC, Bhat P, Solis-Pinson AB, Reyes A, Kleinsorg S, Noh KM, Gibson TJ, Zaugg JB.

Cell Syst. 2017 Dec 27;5(6):628-637.e6. doi: 10.1016/j.cels.2017.10.018. Epub 2017 Nov 29.


The Gene Ontology of eukaryotic cilia and flagella.

Roncaglia P, van Dam TJP, Christie KR, Nacheva L, Toedt G, Huynen MA, Huntley RP, Gibson TJ, Lomax J.

Cilia. 2017 Nov 16;6:10. doi: 10.1186/s13630-017-0054-8. eCollection 2017.


The eukaryotic linear motif resource - 2018 update.

Gouw M, Michael S, Sámano-Sánchez H, Kumar M, Zeke A, Lang B, Bely B, Chemes LB, Davey NE, Deng Z, Diella F, Gürth CM, Huber AK, Kleinsorg S, Schlegel LS, Palopoli N, Roey KV, Altenberg B, Reményi A, Dinkel H, Gibson TJ.

Nucleic Acids Res. 2018 Jan 4;46(D1):D428-D434. doi: 10.1093/nar/gkx1077.


Electroencephalographic assessment of concussive non-penetrative captive bolt stunning of turkeys.

Gibson TJ, Rebelo CB, Gowers TA, Chancellor NM.

Br Poult Sci. 2018 Feb;59(1):13-20. doi: 10.1080/00071668.2017.1401215. Epub 2017 Dec 19.


Comparison of two methods for transformation of Plasmodium knowlesi: Direct schizont electroporation and spontaneous plasmid uptake from plasmid-loaded red blood cells.

Moraes Barros RR, Gibson TJ, Kite WA, Sá JM, Wellems TE.

Mol Biochem Parasitol. 2017 Dec;218:16-22. doi: 10.1016/j.molbiopara.2017.10.001. Epub 2017 Oct 6.


The economics of animal welfare.

Gibson TJ, Jackson EL.

Rev Sci Tech. 2017 Apr;36(1):125-135. doi: 10.20506/rst.36.1.2616. Review.


Intermolecular base stacking mediates RNA-RNA interaction in a crystal structure of the RNA chaperone Hfq.

Schulz EC, Seiler M, Zuliani C, Voigt F, Rybin V, Pogenberg V, Mücke N, Wilmanns M, Gibson TJ, Barabas O.

Sci Rep. 2017 Aug 29;7(1):9903. doi: 10.1038/s41598-017-10085-8.


Exploring Short Linear Motifs Using the ELM Database and Tools.

Gouw M, Sámano-Sánchez H, Van Roey K, Diella F, Gibson TJ, Dinkel H.

Curr Protoc Bioinformatics. 2017 Jun 27;58:8.22.1-8.22.35. doi: 10.1002/cpbi.26.


Metabolic shifts in residual breast cancer drive tumor recurrence.

Havas KM, Milchevskaya V, Radic K, Alladin A, Kafkia E, Garcia M, Stolte J, Klaus B, Rotmensz N, Gibson TJ, Burwinkel B, Schneeweiss A, Pruneri G, Patil KR, Sotillo R, Jechlinger M.

J Clin Invest. 2017 Jun 1;127(6):2091-2105. doi: 10.1172/JCI89914. Epub 2017 May 15.


Efficiency of low versus high airline pressure in stunning cattle with a pneumatically powered penetrating captive bolt gun.

Oliveira SEO, Gregory NG, Dalla Costa FA, Gibson TJ, Paranhos da Costa MJR.

Meat Sci. 2017 Aug;130:64-68. doi: 10.1016/j.meatsci.2017.04.007. Epub 2017 Apr 13.


Degrons in cancer.

Mészáros B, Kumar M, Gibson TJ, Uyar B, Dosztányi Z.

Sci Signal. 2017 Mar 14;10(470). pii: eaak9982. doi: 10.1126/scisignal.aak9982. Review.


Copper catalysed aerobic oxidation of benzylic alcohols in an imidazole containing N4 ligand framework.

Jain R, Gibson TJ, Mashuta MS, Buchanan RM, Grapperhaus CA.

Dalton Trans. 2016 Nov 15;45(45):18356-18364.


An organelle-specific protein landscape identifies novel diseases and molecular mechanisms.

Boldt K, van Reeuwijk J, Lu Q, Koutroumpas K, Nguyen TM, Texier Y, van Beersum SE, Horn N, Willer JR, Mans DA, Dougherty G, Lamers IJ, Coene KL, Arts HH, Betts MJ, Beyer T, Bolat E, Gloeckner CJ, Haidari K, Hetterschijt L, Iaconis D, Jenkins D, Klose F, Knapp B, Latour B, Letteboer SJ, Marcelis CL, Mitic D, Morleo M, Oud MM, Riemersma M, Rix S, Terhal PA, Toedt G, van Dam TJ, de Vrieze E, Wissinger Y, Wu KM, Apic G, Beales PL, Blacque OE, Gibson TJ, Huynen MA, Katsanis N, Kremer H, Omran H, van Wijk E, Wolfrum U, Kepes F, Davis EE, Franco B, Giles RH, Ueffing M, Russell RB, Roepman R; UK10K Rare Diseases Group.

Nat Commun. 2016 May 13;7:11491. doi: 10.1038/ncomms11491.


Hunting for Cis-Regulatory Elements in Proteins.

Gibson TJ, Kumar M.

Cell Syst. 2016 Feb 24;2(2):68-70. doi: 10.1016/j.cels.2016.02.011. Epub 2016 Feb 24.


Assessment of the effectiveness of head only and back-of-the-head electrical stunning of chickens.

Gibson TJ, Taylor AH, Gregory NG.

Br Poult Sci. 2016 Jun;57(3):295-305. doi: 10.1080/00071668.2016.1156648. Epub 2016 Apr 21.


Investigation Into the Humaneness of Slaughter Methods for Guinea Pigs (Cavia porcelus) in the Andean Region.

Limon G, Gonzales-Gustavson EA, Gibson TJ.

J Appl Anim Welf Sci. 2016 Jul-Sep;19(3):280-93. doi: 10.1080/10888705.2016.1138116. Epub 2016 Mar 10.


ELM 2016--data update and new functionality of the eukaryotic linear motif resource.

Dinkel H, Van Roey K, Michael S, Kumar M, Uyar B, Altenberg B, Milchevskaya V, Schneider M, Kühn H, Behrendt A, Dahl SL, Damerell V, Diebel S, Kalman S, Klein S, Knudsen AC, Mäder C, Merrill S, Staudt A, Thiel V, Welti L, Davey NE, Diella F, Gibson TJ.

Nucleic Acids Res. 2016 Jan 4;44(D1):D294-300. doi: 10.1093/nar/gkv1291. Epub 2015 Nov 28.


Experimental detection of short regulatory motifs in eukaryotic proteins: tips for good practice as well as for bad.

Gibson TJ, Dinkel H, Van Roey K, Diella F.

Cell Commun Signal. 2015 Nov 18;13:42. doi: 10.1186/s12964-015-0121-y. Review.


NINL and DZANK1 Co-function in Vesicle Transport and Are Essential for Photoreceptor Development in Zebrafish.

Dona M, Bachmann-Gagescu R, Texier Y, Toedt G, Hetterschijt L, Tonnaer EL, Peters TA, van Beersum SE, Bergboer JG, Horn N, de Vrieze E, Slijkerman RW, van Reeuwijk J, Flik G, Keunen JE, Ueffing M, Gibson TJ, Roepman R, Boldt K, Kremer H, van Wijk E.

PLoS Genet. 2015 Oct 20;11(10):e1005574. doi: 10.1371/journal.pgen.1005574. eCollection 2015 Oct.


Effect of neck cut position on time to collapse in halal slaughtered cattle without stunning.

Gibson TJ, Dadios N, Gregory NG.

Meat Sci. 2015 Dec;110:310-4. doi: 10.1016/j.meatsci.2015.03.026. Epub 2015 Apr 4.


Pathophysiology of free-bullet slaughter of horses and ponies.

Gibson TJ, Bedford EM, Chancellor NM, Limon G.

Meat Sci. 2015 Oct;108:120-4. doi: 10.1016/j.meatsci.2015.06.007. Epub 2015 Jun 12.


The ABBA motif binds APC/C activators and is shared by APC/C substrates and regulators.

Di Fiore B, Davey NE, Hagting A, Izawa D, Mansfeld J, Gibson TJ, Pines J.

Dev Cell. 2015 Feb 9;32(3):358-372. doi: 10.1016/j.devcel.2015.01.003.


Pathophysiology of penetrating captive bolt stunning in Alpacas (Vicugna pacos).

Gibson TJ, Whitehead C, Taylor R, Sykes O, Chancellor NM, Limon G.

Meat Sci. 2015 Feb;100:227-31.


Factors affecting penetrating captive bolt gun performance.

Gibson TJ, Mason CW, Spence JY, Barker H, Gregory NG.

J Appl Anim Welf Sci. 2015;18(3):222-38. doi: 10.1080/10888705.2014.980579. Epub 2014 Nov 21.


Asymmetric mRNA localization contributes to fidelity and sensitivity of spatially localized systems.

Weatheritt RJ, Gibson TJ, Babu MM.

Nat Struct Mol Biol. 2014 Sep;21(9):833-9. doi: 10.1038/nsmb.2876. Epub 2014 Aug 24.


Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer?

Uyar B, Weatheritt RJ, Dinkel H, Davey NE, Gibson TJ.

Mol Biosyst. 2014 Oct;10(10):2626-42. doi: 10.1039/c4mb00290c.


A million peptide motifs for the molecular biologist.

Tompa P, Davey NE, Gibson TJ, Babu MM.

Mol Cell. 2014 Jul 17;55(2):161-9. doi: 10.1016/j.molcel.2014.05.032. Review.


Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation.

Van Roey K, Uyar B, Weatheritt RJ, Dinkel H, Seiler M, Budd A, Gibson TJ, Davey NE.

Chem Rev. 2014 Jul 9;114(13):6733-78. doi: 10.1021/cr400585q. Epub 2014 Jun 13. Review. No abstract available.


Elution profile analysis of SDS-induced subcomplexes by quantitative mass spectrometry.

Texier Y, Toedt G, Gorza M, Mans DA, van Reeuwijk J, Horn N, Willer J, Katsanis N, Roepman R, Gibson TJ, Ueffing M, Boldt K.

Mol Cell Proteomics. 2014 May;13(5):1382-91. doi: 10.1074/mcp.O113.033233. Epub 2014 Feb 21.


The eukaryotic linear motif resource ELM: 10 years and counting.

Dinkel H, Van Roey K, Michael S, Davey NE, Weatheritt RJ, Born D, Speck T, Krüger D, Grebnev G, Kuban M, Strumillo M, Uyar B, Budd A, Altenberg B, Seiler M, Chemes LB, Glavina J, Sánchez IE, Diella F, Gibson TJ.

Nucleic Acids Res. 2014 Jan;42(Database issue):D259-66. doi: 10.1093/nar/gkt1047. Epub 2013 Nov 7.


Capturing cooperative interactions with the PSI-MI format.

Van Roey K, Orchard S, Kerrien S, Dumousseau M, Ricard-Blum S, Hermjakob H, Gibson TJ.

Database (Oxford). 2013 Sep 25;2013:bat066. doi: 10.1093/database/bat066. Print 2013.


Drift and conservation of differential exon usage across tissues in primate species.

Reyes A, Anders S, Weatheritt RJ, Gibson TJ, Steinmetz LM, Huber W.

Proc Natl Acad Sci U S A. 2013 Sep 17;110(38):15377-82. doi: 10.1073/pnas.1307202110. Epub 2013 Sep 3.


The transience of transient overexpression.

Gibson TJ, Seiler M, Veitia RA.

Nat Methods. 2013 Aug;10(8):715-21. doi: 10.1038/nmeth.2534.


Procurement of equids for the horsemeat trade in Great Britain.

Bell Y, Gibson TJ, Gregory NG.

Vet Rec. 2013 Aug 31;173(8):194. doi: 10.1136/vr.101636. Epub 2013 Jul 8. No abstract available.


The switches.ELM resource: a compendium of conditional regulatory interaction interfaces.

Van Roey K, Dinkel H, Weatheritt RJ, Gibson TJ, Davey NE.

Sci Signal. 2013 Apr 2;6(269):rs7. doi: 10.1126/scisignal.2003345.


Hypertension, its treatment, hyperuricaemia and gout.

Gibson TJ.

Curr Opin Rheumatol. 2013 Mar;25(2):217-22. doi: 10.1097/BOR.0b013e32835cedd4. Review.


SLiMPrints: conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions.

Davey NE, Cowan JL, Shields DC, Gibson TJ, Coldwell MJ, Edwards RJ.

Nucleic Acids Res. 2012 Nov;40(21):10628-41. doi: 10.1093/nar/gks854. Epub 2012 Sep 12.


A Proteome-wide screen for mammalian SxIP motif-containing microtubule plus-end tracking proteins.

Jiang K, Toedt G, Montenegro Gouveia S, Davey NE, Hua S, van der Vaart B, Grigoriev I, Larsen J, Pedersen LB, Bezstarosti K, Lince-Faria M, Demmers J, Steinmetz MO, Gibson TJ, Akhmanova A.

Curr Biol. 2012 Oct 9;22(19):1800-7. doi: 10.1016/j.cub.2012.07.047. Epub 2012 Aug 9.


Linear motifs: lost in (pre)translation.

Weatheritt RJ, Gibson TJ.

Trends Biochem Sci. 2012 Aug;37(8):333-41. doi: 10.1016/j.tibs.2012.05.001. Epub 2012 Jun 15. Review.


Linear motifs confer functional diversity onto splice variants.

Weatheritt RJ, Davey NE, Gibson TJ.

Nucleic Acids Res. 2012 Aug;40(15):7123-31. doi: 10.1093/nar/gks442. Epub 2012 May 25.


iELM--a web server to explore short linear motif-mediated interactions.

Weatheritt RJ, Jehl P, Dinkel H, Gibson TJ.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W364-9. doi: 10.1093/nar/gks444. Epub 2012 May 25.


RACK1 research - ships passing in the night?

Gibson TJ.

FEBS Lett. 2012 Aug 14;586(17):2787-9. doi: 10.1016/j.febslet.2012.04.048. Epub 2012 May 8. Review.


A comparative analysis to study editing of small noncoding BC200- and Alu transcripts in brain of prion-inoculated rhesus monkeys (M. Mulatta).

Kiesel P, Kues A, Kaup FJ, Bodemer W, Gibson TJ, Zischler H.

J Toxicol Environ Health A. 2012;75(7):391-401. doi: 10.1080/15287394.2012.670896.


Motif switches: decision-making in cell regulation.

Van Roey K, Gibson TJ, Davey NE.

Curr Opin Struct Biol. 2012 Jun;22(3):378-85. doi: 10.1016/ Epub 2012 Apr 3. Review.


The identification of short linear motif-mediated interfaces within the human interactome.

Weatheritt RJ, Luck K, Petsalaki E, Davey NE, Gibson TJ.

Bioinformatics. 2012 Apr 1;28(7):976-82. doi: 10.1093/bioinformatics/bts072. Epub 2012 Feb 10.

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