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Items: 1 to 50 of 143

1.

Blue protein with red fluorescence.

Ghosh S, Yu CL, Ferraro DJ, Sudha S, Pal SK, Schaefer WF, Gibson DT, Ramaswamy S.

Proc Natl Acad Sci U S A. 2016 Oct 11;113(41):11513-11518. Epub 2016 Sep 29.

2.

Structures of the multicomponent Rieske non-heme iron toluene 2,3-dioxygenase enzyme system.

Friemann R, Lee K, Brown EN, Gibson DT, Eklund H, Ramaswamy S.

Acta Crystallogr D Biol Crystallogr. 2009 Jan;65(Pt 1):24-33. doi: 10.1107/S0907444908036524. Epub 2008 Dec 18.

3.
4.

Purification, characterization, and crystallization of the components of a biphenyl dioxygenase system from Sphingobium yanoikuyae B1.

Yu CL, Liu W, Ferraro DJ, Brown EN, Parales JV, Ramaswamy S, Zylstra GJ, Gibson DT, Parales RE.

J Ind Microbiol Biotechnol. 2007 Apr;34(4):311-24. Epub 2007 Jan 9.

PMID:
17211635
5.

Purification, crystallization and preliminary X-ray diffraction studies of the three components of the toluene 2,3-dioxygenase enzyme system.

Lee K, Friemann R, Parales JV, Gibson DT, Ramaswamy S.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Jul 1;61(Pt 7):669-72. Epub 2005 Jun 15. Erratum in: Acta Crystallograph Sect F Struct Biol Cryst Commun. 2006 Apr 1;62(Pt 4):422.

6.

Purification, characterization, and crystallization of the components of the nitrobenzene and 2-nitrotoluene dioxygenase enzyme systems.

Parales RE, Huang R, Yu CL, Parales JV, Lee FK, Lessner DJ, Ivkovic-Jensen MM, Liu W, Friemann R, Ramaswamy S, Gibson DT.

Appl Environ Microbiol. 2005 Jul;71(7):3806-14.

7.

NO binding to naphthalene dioxygenase.

Karlsson A, Parales JV, Parales RE, Gibson DT, Eklund H, Ramaswamy S.

J Biol Inorg Chem. 2005 Aug;10(5):483-9. Epub 2005 Sep 23.

PMID:
15942729
8.

Structural insight into the dioxygenation of nitroarene compounds: the crystal structure of nitrobenzene dioxygenase.

Friemann R, Ivkovic-Jensen MM, Lessner DJ, Yu CL, Gibson DT, Parales RE, Eklund H, Ramaswamy S.

J Mol Biol. 2005 May 20;348(5):1139-51. Epub 2005 Apr 7.

PMID:
15854650
9.

Stereochemical and mechanistic aspects of dioxygenase-catalysed benzylic hydroxylation of indene and chromane substrates.

Boyd DR, Sharma ND, Bowers NI, Boyle R, Harrison JS, Lee K, Bugg TD, Gibson DT.

Org Biomol Chem. 2003 Apr 21;1(8):1298-307.

PMID:
12929659
10.
11.

Crystal structure of naphthalene dioxygenase: side-on binding of dioxygen to iron.

Karlsson A, Parales JV, Parales RE, Gibson DT, Eklund H, Ramaswamy S.

Science. 2003 Feb 14;299(5609):1039-42.

12.

Molecular characterization and substrate specificity of nitrobenzene dioxygenase from Comamonas sp. strain JS765.

Lessner DJ, Johnson GR, Parales RE, Spain JC, Gibson DT.

Appl Environ Microbiol. 2002 Feb;68(2):634-41.

13.

Multiple mutations at the active site of naphthalene dioxygenase affect regioselectivity and enantioselectivity.

Yu CL, Parales RE, Gibson DT.

J Ind Microbiol Biotechnol. 2001 Aug;27(2):94-103.

PMID:
11641767
14.

Beijerinckia sp strain B1: a strain by any other name.

Gibson DT.

J Ind Microbiol Biotechnol. 1999 Oct;23(4-5):284-293.

PMID:
11423945
15.

Single turnover chemistry and regulation of O2 activation by the oxygenase component of naphthalene 1,2-dioxygenase.

Wolfe MD, Parales JV, Gibson DT, Lipscomb JD.

J Biol Chem. 2001 Jan 19;276(3):1945-53. Epub 2000 Oct 30.

16.
17.

Aromatic hydrocarbon dioxygenases in environmental biotechnology.

Gibson DT, Parales RE.

Curr Opin Biotechnol. 2000 Jun;11(3):236-43. Review.

PMID:
10851146
18.

The reduction of the Rieske iron-sulfur cluster in naphthalene dioxygenase by X-rays.

Karlsson A, Parales JV, Parales RE, Gibson DT, Eklund H, Ramaswamy S.

J Inorg Biochem. 2000 Jan 15;78(1):83-7.

PMID:
10714709
19.

Substrate specificity of naphthalene dioxygenase: effect of specific amino acids at the active site of the enzyme.

Parales RE, Lee K, Resnick SM, Jiang H, Lessner DJ, Gibson DT.

J Bacteriol. 2000 Mar;182(6):1641-9.

20.

Substrate binding site of naphthalene 1,2-dioxygenase: functional implications of indole binding.

Carredano E, Karlsson A, Kauppi B, Choudhury D, Parales RE, Parales JV, Lee K, Gibson DT, Eklund H, Ramaswamy S.

J Mol Biol. 2000 Feb 18;296(2):701-12.

PMID:
10669618
21.

Aspartate 205 in the catalytic domain of naphthalene dioxygenase is essential for activity.

Parales RE, Parales JV, Gibson DT.

J Bacteriol. 1999 Mar;181(6):1831-7.

23.

Structure of an aromatic-ring-hydroxylating dioxygenase-naphthalene 1,2-dioxygenase.

Kauppi B, Lee K, Carredano E, Parales RE, Gibson DT, Eklund H, Ramaswamy S.

Structure. 1998 May 15;6(5):571-86.

24.

Substrate specificities of hybrid naphthalene and 2,4-dinitrotoluene dioxygenase enzyme systems.

Parales RE, Emig MD, Lynch NA, Gibson DT.

J Bacteriol. 1998 May;180(9):2337-44.

26.

Cloning and sequence analysis of a catechol 2,3-dioxygenase gene from the nitrobenzene-degrading strain Comamonas sp JS765.

Parales RE, Ontl TA, Gibson DT.

J Ind Microbiol Biotechnol. 1997 Nov-Dec;19(5-6):385-91.

PMID:
9451836
27.

Purification and properties of ferredoxinBPH, a component of biphenyl 2,3-dioxygenase of Pseudomonas sp strain LB400.

Haddock JD, Pelletier DA, Gibson DT.

J Ind Microbiol Biotechnol. 1997 Nov-Dec;19(5-6):355-9.

PMID:
9451832
28.

On learning to drive and being taken for a ride.

Gibson DT.

J Ind Microbiol Biotechnol. 1997 Nov-Dec;19(5-6):312-23. No abstract available.

PMID:
9451828
29.

Purification and crystallization of the oxygenase component of naphthalene dioxygenase in native and selenomethionine-derivatized forms.

Lee K, Kauppi B, Parales RE, Gibson DT, Ramaswamy S.

Biochem Biophys Res Commun. 1997 Dec 18;241(2):553-7.

PMID:
9425309
30.
31.

Initial reactions in the oxidation of 1,2-dihydronaphthalene by Sphingomonas yanoikuyae strains.

Eaton SL, Resnick SM, Gibson DT.

Appl Environ Microbiol. 1996 Dec;62(12):4388-94.

32.

Cloning and sequencing of the genes encoding 2-nitrotoluene dioxygenase from Pseudomonas sp. JS42.

Parales JV, Kumar A, Parales RE, Gibson DT.

Gene. 1996 Nov 28;181(1-2):57-61.

PMID:
8973308
35.
36.
40.

Purification and characterization of the oxygenase component of biphenyl 2,3-dioxygenase from Pseudomonas sp. strain LB400.

Haddock JD, Gibson DT.

J Bacteriol. 1995 Oct;177(20):5834-9. Erratum in: J Bacteriol 1996 Apr;178(7):258.

41.

Desaturation and oxygenation of 1,2-dihydronaphthalene by toluene and naphthalene dioxygenase.

Torok DS, Resnick SM, Brand JM, Cruden DL, Gibson DT.

J Bacteriol. 1995 Oct;177(20):5799-805.

42.

Stereospecific sulfoxidation by toluene and naphthalene dioxygenases.

Lee K, Brand JM, Gibson DT.

Biochem Biophys Res Commun. 1995 Jul 6;212(1):9-15.

PMID:
7612022
43.

Desaturation, dioxygenation, and monooxygenation reactions catalyzed by naphthalene dioxygenase from Pseudomonas sp. strain 9816-4.

Gibson DT, Resnick SM, Lee K, Brand JM, Torok DS, Wackett LP, Schocken MJ, Haigler BE.

J Bacteriol. 1995 May;177(10):2615-21.

44.

Identification of a membrane protein and a truncated LysR-type regulator associated with the toluene degradation pathway in Pseudomonas putida F1.

Wang Y, Rawlings M, Gibson DT, Labbé D, Bergeron H, Brousseau R, Lau PC.

Mol Gen Genet. 1995 Mar 10;246(5):570-9.

PMID:
7535376
45.

Regiospecific and stereoselective hydroxylation of 1-indanone and 2-indanone by naphthalene dioxygenase and toluene dioxygenase.

Resnick SM, Torok DS, Lee K, Brand JM, Gibson DT.

Appl Environ Microbiol. 1995 Feb;61(2):847.

47.
48.

Metabolism of benz[a]anthracene by the filamentous fungus Cunninghamella elegans.

Cerniglia CE, Gibson DT, Dodge RH.

Appl Environ Microbiol. 1994 Nov;60(11):3931-8.

49.

Regiospecific and stereoselective hydroxylation of 1-indanone and 2-indanone by naphthalene dioxygenase and toluene dioxygenase.

Resnick SM, Torok DS, Lee K, Brand JM, Gibson DT.

Appl Environ Microbiol. 1994 Sep;60(9):3323-8. Erratum in: Appl Environ Microbiol 1995 Feb;61(2):847.

50.

Sequence and expression of the todGIH genes involved in the last three steps of toluene degradation by Pseudomonas putida F1.

Lau PC, Bergeron H, Labbé D, Wang Y, Brousseau R, Gibson DT.

Gene. 1994 Aug 19;146(1):7-13.

PMID:
8063106

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